From 87f1391114b811caa5506f750ecc29c70a1a61ce Mon Sep 17 00:00:00 2001
From: Ruairidh MacLeod <ruairidh@rkm.dev>
Date: Fri, 20 Sep 2024 15:48:15 +0100
Subject: [PATCH] remove some directories to reduce image size

---
 software/Freesurfer/Dockerfile | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/software/Freesurfer/Dockerfile b/software/Freesurfer/Dockerfile
index 53fc289..17290b7 100644
--- a/software/Freesurfer/Dockerfile
+++ b/software/Freesurfer/Dockerfile
@@ -79,11 +79,18 @@ RUN : \
     && echo "${FREESURFER_DEB_MD5} ${deb}" | md5sum -c \
     && dpkg -i "${deb}" \
     && rm "${deb}" \
+    && cd "${FREESURFER_HOME}" \
+    && rm -rf \
+        average/mult-comp-cor \
+        lib/cuda \
+        lib/qt \
+        subjects \
+        trctrain \
     && :
 
 RUN : \
     && mkdir /safe_data /safe_outputs /scratch \
     && useradd ces-user \
     && :
-    
+
 USER ces-user