v0.4.2

What's Changed

• 666 sphinx failure by @jesper-friis in #670
• Removed psycopg2-binary from requirement_full.txt by @jesper-friis in #668

Full Changelog: v0.4.1...v0.4.2

Changelog

v0.4.2 (2023-10-12)

Full Changelog

Fixed bugs:

• Seg fault for v0.4 #660

Merged pull requests:

• 666 sphinx failure #670 (jesper-friis)
• Removed psycopg2-binary from requirement_full.txt #668 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.4.1

What's Changed

• Clean up CI workflows for auto-updating dependencies by @CasperWA in #616
• Don't use setup.py XXX by @CasperWA in #614
• Bump actions/setup-python from 3 to 4 by @dependabot in #551
• Made it easy to silence specific DLite error messages both in C and Python by @jesper-friis in #641
• Iterate over storage plugins by @jesper-friis in #643
• Support quoted relations in collection by @jesper-friis in #633
• Tem example by @jesper-friis in #612
• Added new test for issue #543 by @jesper-friis in #649

Full Changelog: v0.4.0...v0.4.1

Changelog

v0.4.1 (2023-09-29)

Full Changelog

Fixed bugs:

• DLite without full not working #629

Closed issues:

• Superfluous file in .github #615
• Fix failing dependabot PRs #604
• Replace running setup.py #558
• Update mappings in DLite to use tripper #499

Merged pull requests:

• Added new test for issue #543 #649 (jesper-friis)
• Iterate over storage plugins #643 (jesper-friis)
• Made it easy to silence specific DLite error messages both in C and Python #641 (jesper-friis)
• Support quoted relations in collection #633 (jesper-friis)
• Clean up CI workflows for auto-updating dependencies #616 (CasperWA)
• Don't use setup.py XXX #614 (CasperWA)
• Tem example #612 (jesper-friis)
• Bump actions/setup-python from 3 to 4 #551 (dependabot[bot])

* This Changelog was automatically generated by github_changelog_generator

v0.4.0

Major change in DLite v0.4.0

Minimal installation

Running pip install dlite-python now does a minimal installation with NumPy as the only dependency.

To retain the former behaviour of get all optional dependencies needed by the different plugins, install DLite with

pip install dlite-python[full]

Improved error

Errors at C-level now raises corrosponding subclasses of DLiteError.

It is not possible to see traceback from errors occuring within Python storage plugins by setting the DLITE_PYDEBUG environment variable.

Merged pull requests

• 580 error messages from python plugins by @jesper-friis in #585
• Fix segfault when calling Instance.to_bytes() for drivers not supporting memsave by @jesper-friis in #588
• Code cleanup by @jesper-friis in #591
• Fix gcc warning by @jesper-friis in #596
• Cleaned up docstrings in the YAML storage plugin by @jesper-friis in #590
• Updated formatting of entities by @jesper-friis in #586
• Added support for Pydantic 2.x by @jesper-friis in #592
• Added --package option to patch-activate.sh script by @jesper-friis in #598
• Test http plugin by @jesper-friis in #593
• Install cmake with pip by @jesper-friis in #608
• Fix iterate over storage plugin names by @jesper-friis in #607
• Run python files through black by @jesper-friis in #610
• Make figures show up correctly in README on PyPI by @jesper-friis in #611
• Better error messages from within plugins by @jesper-friis in #613
• Reduce requirements by @jesper-friis in #594

Full Changelog: v0.3.22...v0.4.0

Changelog

v0.4.0 (2023-08-24)

Full Changelog

Fixed bugs:

• find_package(dlite) fails with CMake 3.26 #518
• Fix bugs introduced during documentation #468

Closed issues:

• Remove test_python_bindings #605
• Install Python package under lib64/ on systems supporting that #597
• Instance.to_bytes() segfaults if driver is not supported #587
• Support for pydantic 2.0 #574
• storages/python/python-storage-plugins/http.py needs requests #569
• Clean up requirements #517
• Shorten build time for musl linux #362

Merged pull requests:

• Better error messages from within plugins #613 (jesper-friis)
• Make figures show up correctly in README on PyPI #611 (jesper-friis)
• Run python files through black #610 (jesper-friis)
• Install cmake with pip #608 (jesper-friis)
• Fix iterate over storage plugin names #607 (jesper-friis)
• Added --package option to patch-activate.sh script #598 (jesper-friis)
• Fix gcc warning #596 (jesper-friis)
• Reduce requirements #594 (jesper-friis)
• Test http plugin #593 (jesper-friis)
• Added support for Pydantic 2.x #592 (jesper-friis)
• Code cleanup #591 (jesper-friis)
• Cleaned up docstrings in the YAML storage plugin #590 (jesper-friis)
• Python errors #589 (jesper-friis)
• Fix segfault when calling Instance.to_bytes() for drivers not supporting memsave #588 (jesper-friis)
• Updated formatting of entities #586 (jesper-friis)
• 580 error messages from python plugins #585 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.22

What's Changed

• Avoid calling a plugin from a plugin by @jesper-friis in #578
• Added "str" as an alias for "string" by @jesper-friis in #576
• Cleanup plugins by @jesper-friis in #583
• Updated README file in storage plugin example. by @jesper-friis in #577
• Example of how to serialise data models to RDF by @jesper-friis in #581
• Improved error reporting from Python by @jesper-friis in #584

Full Changelog: v0.3.21...v0.3.22

Changelog

v0.3.22 (2023-07-14)

Full Changelog

Implemented enhancements:

• Publish new documentation on GH Pages #369
• Add support for BSON serialisation directly in C #332

Fixed bugs:

• save entity to json, uuid not included #278

Closed issues:

• Error messages from Python plugins #580
• Add "str" as alias for "string" in datamodel types #571
• Update README in storage plugin example #570
• [Docs part] 1. Getting started #460
• [Docs part] 1.1.2. Features #457
• [Docs part] 1.2. Installation instructions #456
• [Docs part] 1.2.1. Setup instructions #455
• [Docs part] 1.2.2. Build instructions #454
• [Docs part] 1.3. Tutorial #453
• [Docs part] 2. User guide #452
• [Docs part] 2.2. Data types #450
• [Docs part] 2.3. Mappings #449
• [Docs part] 2.4. Collections #448
• [Docs part] 2.5. Bindings #447
• [Docs part] 2.6. Transactions #446
• [Docs part] 2.8. Environment variables #444
• [Docs part] 2.9. Code generation #443
• [Docs part] 3. API Reference #442
• [Docs part] 4. Contributor's Guide #441
• [Docs part] 4.1. Writing storage plugins #440
• [Docs part] 4.2. Writing mapping plugins #439
• [Docs part] 4.3. Documentation guideline #438
• [Docs part] 4.4. Testing examples in the documentation #437
• [Docs part] 4.5. Tips and tricks #436
• [Docs part] 5. Acknowledgement #435
• Expand on documentation contribution guidelines #432
• Resolve cross-references #417
• Duplicate object descriptions #416
• Generate sphinx rst-files and folders from index.xml #405
• Document the mappings example #403
• Document property mappings #399
• Update installation page #394
• Add page about type system #393
• Document instance mappings #392
• Tutorial #391
• Review existing examples #388
• Clean up README file #387
• Document how to install within a python environment #338
• Test property mappings #301
• Building via CMake using the Ninja Generator fails with multiple rules for dlite.py #144
• Make plugin for Stardog #136

Merged pull requests:

• Improved error reporting from Python #584 (jesper-friis)
• Cleanup plugins #583 (jesper-friis)
• Example of how to serialise data models to RDF #581 (jesper-friis)
• Updated PR template #579 (jesper-friis)
• Avoid calling a plugin from a plugin #578 (jesper-friis)
• Updated README file in storage plugin example. #577 (jesper-friis)
• Added "str" as an alias for "string" #576 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.21

What's Changed

• Added DOI badge to readme by @jesper-friis in #539
• Update readme by @jesper-friis in #542
• Added a button to toggle on or off the prompt and output in Python examples by @jesper-friis in #544
• New redis storage plugin by @jesper-friis in #549
• Added two additional tests for dlite-type by @jesper-friis in #545
• Update yaml plugin by @jesper-friis in #505
• Added script that patches virtual environment activate script by @jesper-friis in #550
• MinIO plugin by @jesper-friis in #555
• Fixed memory bugs by @jesper-friis in #560
• Replaced some occurrences of dims by @jesper-friis in #561
• cmake with virtualenv by @jesper-friis in #559
• Fixed some typos in the redis plugin by @jesper-friis in #554
• Improved error message from Collection.get_instances() by @jesper-friis in #567
• Convince redis to not hang by @jesper-friis in #562
• Updated requirements with versions by @francescalb in #573
• Improved error reporting by @jesper-friis in #563
• Check BSON encoding/decoding of doubles by @jesper-friis in #557
• Python interface by @jesper-friis in #565
• New template-based plugin for generating files by @jesper-friis in #568

Full Changelog: v0.3.20...v0.3.21

Changelog

v0.3.21 (2023-07-12)

Full Changelog

Closed issues:

• Fix issue with failing CI/CD workflows #572
• Inconsistent BSON encoding/decoding of doubles #556
• Set default dlite paths correctly when running from virtual environment #547
• Add plugin for redis #546
• Add LD_LIBRARY_PATH to activate script when installing DLite to a virtual Python environment #540

Merged pull requests:

• Updated requirements with versions #573 (francescalb)
• New template-based plugin for generating files #568 (jesper-friis)
• Improved error message from Collection.get_instances() #567 (jesper-friis)
• Bump pypa/gh-action-pypi-publish from 1.8.6 to 1.8.7 #566 (dependabot[bot])
• Python interface #565 (jesper-friis)
• Improved error reporting #563 (jesper-friis)
• Convince redis to not hang #562 (jesper-friis)
• Replaced some occurrences of dims #561 (jesper-friis)
• Fixed memory bugs #560 (jesper-friis)
• cmake with virtualenv #559 (jesper-friis)
• Check BSON encoding/decoding of doubles #557 (jesper-friis)
• MinIO plugin #555 (jesper-friis)
• Fixed some typos in the redis plugin #554 (jesper-friis)
• Added script that patches virtual environment activate script #550 (jesper-friis)
• New redis storage plugin #549 (jesper-friis)
• Added two additional tests for dlite-type #545 (jesper-friis)
• Added a button to toggle on or off the prompt and output in Python examples #544 (jesper-friis)
• Update readme #542 (jesper-friis)
• Added DOI badge to readme #539 (jesper-friis)
• Update yaml plugin #505 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.20

What's Changed

• Pin psycopg2-binary to v2.9.5 by @CasperWA in #530
• Add support for building Python 3.11 pip package by @lovfall in #521
• Workaround for new version of cmake not defining _VERSION_PATCH by @jesper-friis in #529
• Added --debug flag to dlite-validate by @jesper-friis in #508
• Allow specifying Python version when configuring DLite by @jesper-friis in #536
• Update GH Actions by @CasperWA in #533
• Bump pypa/gh-action-pypi-publish from 1.8.5 to 1.8.6 by @dependabot in #538
• 501 pydantic dlite entity function by @jesper-friis in #516
• Fix infer_dimensions() by @jesper-friis in #535
• Update for deprecated features in Python 3.11 and SWIG 4.1 by @jesper-friis in #537
• Quickfix for assertion error in dlite_json_asprint() by @jesper-friis in #541

New Contributors

• @dependabot made their first contribution in #538

Full Changelog: v0.3.19...v0.3.20

Changelog

v0.3.20 (2023-05-26)

Full Changelog

Implemented enhancements:

• Have a proper pydantic -> dlite entity function #501

Fixed bugs:

• Syntax error in dlite-codegen? #528
• A Segmentation fault occurs when used in OTEAPI #527
• ImportError with pip-installed DLite #519

Closed issues:

• 0.3.19 introduce error in ExecFlowDemo #534
• CI/CD GitHub Actions warnings #532
• Error with _dlite_infer_dimensions method #523
• Build python packages for Python 3.11 #520

Merged pull requests:

• Quickfix for assertion error in dlite_json_asprint() #541 (jesper-friis)
• Bump pypa/gh-action-pypi-publish from 1.8.5 to 1.8.6 #538 (dependabot[bot])
• Update for deprecated features in Python 3.11 and SWIG 4.1 #537 (jesper-friis)
• Allow specifying Python version when configuring DLite #536 (jesper-friis)
• Fix infer_dimensions() #535 (jesper-friis)
• Update GH Actions #533 (CasperWA)
• Pin psycopg2-binary to v2.9.5 #530 (CasperWA)
• Workaround for new version of cmake not defining <project>_VERSION_PATCH #529 (jesper-friis)
• Add support for building Python 3.11 pip package #521 (lovfall)
• 501 pydantic dlite entity function #516 (jesper-friis)
• Added --debug flag to dlite-validate #508 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.19

DLite v0.3.19

DLite is a C implementation of the SINTEF Open Framework and Tools (SOFT), which is a set of concepts and tools for using data models (aka Metadata) to efficiently describe and work with scientific data.

The core of DLite is a framework for formalised representation of data described by data models (called Metadata or Entity in DLite). On top of this, DLite has a plugin system for various representations of the data in different formats and storages, as well as bindings to popular languages like Python, mappings to ontological concepts for enhanced semantics and a set of tools.

Documentation: SINTEF.github.io/dlite

Changelog

v0.3.19 (2023-04-18)

Full Changelog

Fixed bugs:

• CI tests for example ex4 fails #509

Merged pull requests:

• Revert "Release v3.19" #531 (@CasperWA)
• Run dependent tests in correct order #525 (@jesper-friis)
• Entity service #524 (@jesper-friis)
• Increased the size of types with unspecified size. #522 (@jesper-friis)
• Dedicated test for ref type #514 (@jesper-friis)
• Asjson #513 (@jesper-friis)
• Added "integer" as a valid type name #511 (@jesper-friis)
• Updated ci-tests.yml to use cmake 3.25.2 #510 (@jesper-friis)
• Added overview figure to the top-level README file #507 (@jesper-friis)
• Fix handling of storage plugin query glob pattern. #506 (@jesper-friis)
• Documentation cleanup #504 (@jesper-friis)
• Mongodbatlas dlite #485 (@daniel-sintef)

* This Changelog was automatically generated by github_changelog_generator

v0.3.18

What's Changed

• Cleared Jupyter notebook output by @jesper-friis in #486
• Added documentation of type system. by @jesper-friis in #489
• 474 fix python documentation requirements by @alfredoisg in #490
• commented out private-members from autoapi_options in conf.py.in by @alfredoisg in #492
• Recursive directory creation for unit registry cache by @ajeklund in #496
• Create units_README.md by @ajeklund in #494
• Added properties keyword to metadata call() method by @jesper-friis in #503

Full Changelog: v0.3.17...v0.3.18

Changelog

v0.3.18 (2023-03-20)

Full Changelog

Fixed bugs:

• Recursive directory creation for unit registry cache #495
• Sphinx documentation includes private objects #488
• Recursive directory creation for unit registry cache #496 (ajeklund)

Closed issues:

• Add a properties argument to the Metadata constructor #502
• README for pint unit registry generator #493
• Fix python documentation requirements #474

Merged pull requests:

• Added properties keyword to metadata __call__() method #503 (jesper-friis)
• Create units_README.md #494 (ajeklund)
• commented out _private-members_ from autoapi_options in conf.py.in #492 (alfredoisg)
• 474 fix python documentation requirements #490 (alfredoisg)
• Added documentation of type system. #489 (jesper-friis)
• Cleared Jupyter notebook output #486 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.17

What's Changed

• Bson representation by @jesper-friis in #383
• Cleaned up the last two memory leaks reported with valgrind when compiled without python by @jesper-friis in #384
• Improve documentation of dlite.Instance.call() by @jesper-friis in #410
• Added C-API documentation to the sphinx documentation project by @quaat in #404
• Removed duplicated declarations by @jesper-friis in #406
• Temporarily disable cancel-in-progess CI docs by @CasperWA in #420
• Update Sphinx config by @CasperWA in #415
• Improve error messages from invalid datamodels by @jesper-friis in #386
• Updated collection documentation by @jesper-friis in #408
• Do not install examples into the /share/dlite/ directory by @jesper-friis in #422
• Created table of contents for the documentation. by @ajeklund in #411
• Ensure that UUIDs are NUL-terminated by @jesper-friis in #427
• Guideline for how to contribute documentation by @jesper-friis in #402
• Made install rule for FORTRAN modules when FORTRAN bindings are built by @lovfall in #414
• Updated doc/tools.md by @jesper-friis in #425
• Fix issues in example 4 by @lovfall in #431
• Made close() optional in Python storage plugins by @jesper-friis in #464
• Bugfix: proper failure if storage iterator cannot be created. by @jesper-friis in #469
• Updated concepts.md by @jesper-friis in #407
• Consolidated all documentation into the docs folder by @quaat in #471
• Added documentation and example for how to write a Python storage plugin by @jesper-friis in #465
• Updated readme from OpenModel mappings demo by @jesper-friis in #473
• Extend the storage plugin api by @jesper-friis in #472
• Coding guidelines by @jesper-friis in #467
• Added dlite-validate script by @jesper-friis in #461
• Specify explicitly that we use fno to represent mapping functions by @jesper-friis in #481
• More homogen icons for the manual by @jesper-friis in #478
• Add PR template by @alfredoisg in #477
• Moved storage plugins documentation to the user guide by @quaat in #480
• Fixed path to logo by @jesper-friis in #487
• Describe how to add ld library path to virtualenv activate scrip by @alfredoisg in #483
• Tutorial (issue #391) by @alfredoisg and @kriwiik in #482
• Included tools to the pip package by @jesper-friis in #428

New Contributors

• @alfredoisg made their first contribution in #477
• @kriwiik made their first contribution in #477

Full Changelog: v0.3.16...v0.3.17

Changelog

v0.3.17 (2023-02-08)

Full Changelog

Implemented enhancements:

• Install Fortran modules when Fortran binding are built #413
• API for accessing plugin documentation #335
• Triplestore backend to OntoRec/OntoKB #331

Fixed bugs:

• Remove Py files under built mapping-plugins folder #412
• Ensure that UUIDs are NUL-terminated #427 (jesper-friis)
• [DO NOT MERGE] Reverting the changes that breaks the postgresql tests #424 (jesper-friis)

Closed issues:

• storage plugins documentation #479
• Describe how to add LD_LIBRARY_PATH to virtualenv activate scrip #466
• Optional close() method in Python storage plugins #463
• Consolidate doc and pydoc folders #430
• Include tools in the python package #426
• Guideline for how to contribute documentation #409
• Example 4 is not working properly #401
• Update and clean Sphinx configuration #400
• Describe doc/tools.md #398
• Document how to write Python storage plugins #397
• Update doc/collection.md #396
• Include the C documentation into the sphinx-generated documentation #395
• Create a table of content in doc/ #390
• Merge SOFT5 documentation into DLite #389
• Fix CI/CD issue in PR #375 #376
• Datamodel dimensions #353
• No identification of error in datamodel #352
• Add tests to the triplestore subpackage #341
• Simplify the storage plugin API #80

Merged pull requests:

• Fixed path to logo #487 (jesper-friis)
• 466 describe how to add ld library path to virtualenv activate scrip #483 (alfredoisg)
• 391 tutorial #482 (alfredoisg)
• Specify explicitely that we use fno to represent mapping functions #481 (jesper-friis)
• Moved storage plugins documentation to the user guide #480 (quaat)
• More homogen icons for the manual #478 (jesper-friis)
• Add PR template #477 (alfredoisg)
• Updated readme from OpenModel mappings demo #473 (jesper-friis)
• Extend the storage plugin api #472 (jesper-friis)
• Consolidated all documentation into the docs folder #471 (quaat)
• Bugfix: proper failure if storage iterator cannot be created. #469 (jesper-friis)
• Coding guidelines #467 (jesper-friis)
• Added documentation and example for how to write a Python storage plugin #465 (jesper-friis)
• Made close() optional in Python storage plugins #464 (jesper-friis)
• Added dlite-validate script #461 (jesper-friis)
• Fixed typo #433 (jesper-friis)
• 401 example 4 is not working properly #431 (lovfall)
• Included tools to the pip package #428 (jesper-friis)
• Updated doc/tools.md #425 (jesper-friis)
• Do not install examples into the <prefix>/share/dlite/ directory #422 (jesper-friis)
• Temporarily disable cancel-in-progess CI docs #420 (CasperWA)
• Update Sphinx config #415 (CasperWA)
• Made install rule for FORTRAN modules when FORTRAN bindings are built #414 (lovfall)
• Created table of contents for the documentation. #411 (ajeklund)
• Improve documentation of dlite.Instance.__call__() #410 ([jesper-friis](https://github.co...

v0.3.16

What's Changed

• Adding transactions by @jesper-friis in #260
• Added info about installing as dev in linux with dedicated py env. by @francescalb in #339
• Generate python api documentation by @quaat in #367
• Updated README by removing optional when dependency is needed fo build. by @francescalb in #345
• a bit more explicit that paths need to be manually set by @daniel-sintef in #347
• Improved error codes by @daniel-sintef in #348
• Fixed doxygen warnings by @jesper-friis in #359
• Added support for HDF5 v1.10+ by @jesper-friis in #357
• Fixed gcc warnings by @jesper-friis in #355
• Update CD - Docs workflow by @CasperWA in #370
• Ignore lines with the STRINGIFY() macro, which cppcheck suddenly started to compain about by @jesper-friis in #373
• Pint unit registry from ontologies by @ajeklund in #342
• Mapping function from collection by @jesper-friis in #375
• Added metaid argument to Collection.get_instances() by @jesper-friis in #374
• Give instances a default uri by @jesper-friis in #378
• Adding tips and tricks by @jesper-friis in #371
• Do not build documentation by default by @jesper-friis in #381

New Contributors

• @daniel-sintef made their first contribution in #347

Full Changelog: v0.3.15...v0.3.16

Changelog

v0.3.16 (2022-12-20)

Full Changelog

Implemented enhancements:

• Support newer versions of HDF5 #356
• Fix new warnings from gcc 12.2.1 #354
• Populate unit DB from ontologies #320

Fixed bugs:

• Fix doxygen warning #358

Closed issues:

• Give instances a default uri #377
• Fix new cppcheck issue #372
• Generate Python API Documentation #366
• PR339 was merged and too early #344
• Triplestore SPARQL queries #336

Merged pull requests:

• Do not build documentation by default #381 (jesper-friis)
• Alternative to hack #379 #380 (jesper-friis)
• Give instances a default uri #378 (jesper-friis)
• Mapping function from collection #375 (jesper-friis)
• Added metaid argument to Collection.get_instances() #374 (jesper-friis)
• Ignore lines with the STRINGIFY() macro, which cppcheck suddenly started to compain about #373 (jesper-friis)
• Adding tips and tricks #371 (jesper-friis)
• Update CD - Docs workflow #370 (CasperWA)
• 366 generate python api documentation #367 (quaat)
• Build against python3.7 #365 (jesper-friis)
• Updated badges on readme file #361 (jesper-friis)
• Fixed doxygen warnings #359 (jesper-friis)
• Added support for HDF5 v1.10+ #357 (jesper-friis)
• Fixed gcc warnings #355 (jesper-friis)
• Improved error codes #351 (daniel-sintef)
• Added clear description of expected return value from the Triplestore.query() method #349 (jesper-friis)
• Improved error codes #348 (daniel-sintef)
• a bit more explicit that paths need to be manually set #347 (daniel-sintef)
• Updated README by removing optional when dependency is needed fo build. #345 (francescalb)
• WIP: Pint unit registry from ontologies #342 (ajeklund)
• Qudt prefix #340 (jesper-friis)
• Added info about installing as dev in linux with dedicated py env. #339 (francescalb)
• Added OntoPy triplestore backend #329 (jesper-friis)
• Adding transactions #260 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator