From fa475e3fd624772596afd229b241f866f36a680c Mon Sep 17 00:00:00 2001 From: "Philipp D. Rohde" Date: Tue, 23 Jul 2024 08:21:00 +0000 Subject: [PATCH] Docs built for commit b4d7444f9faab8ee2da8b5c2e325842d74a474b4 --- .buildinfo | 2 +- _static/documentation_options.js | 2 +- changelog.html | 12 ++++++++++-- contributors.html | 4 ++-- decomposition.html | 4 ++-- genindex.html | 4 ++-- index.html | 4 ++-- library.html | 6 +++--- objects.inv | Bin 389 -> 389 bytes reference.html | 4 ++-- search.html | 4 ++-- searchindex.js | 2 +- service.html | 4 ++-- source_description.html | 4 ++-- 14 files changed, 32 insertions(+), 24 deletions(-) diff --git a/.buildinfo b/.buildinfo index 3c6a491..4e9e744 100644 --- a/.buildinfo +++ b/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: e30877e3d61396fe59cd50d30ca8c301 +config: 2fd51a953d268ccc331bc6f7acf5e581 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/_static/documentation_options.js b/_static/documentation_options.js index 1910edc..f0ad109 100644 --- a/_static/documentation_options.js +++ b/_static/documentation_options.js @@ -1,6 +1,6 @@ var DOCUMENTATION_OPTIONS = { URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '0.15.6', + VERSION: '0.16.0', LANGUAGE: 'en', COLLAPSE_INDEX: false, BUILDER: 'html', diff --git a/changelog.html b/changelog.html index a190653..2b9275b 100644 --- a/changelog.html +++ b/changelog.html @@ -4,7 +4,7 @@ - Changelog — DeTrusty 0.15.6 documentation + Changelog — DeTrusty 0.16.0 documentation @@ -34,7 +34,7 @@
- 0.15.6 + 0.16.0
@@ -90,6 +90,14 @@

Changelog

+
+

v0.16.0 - 23 Jul 2024

+
    +

  • Add physical operator NestedHashJoinValues (NHJV)

    • +

  • Add physical operator NestedHashOptionalValues (NHOV)

    • +

  • Use NHJV and NHOV for nested hash join and nested hash optional instead of their FILTER variants

    • +
+

v0.15.6 - 08 May 2024

    diff --git a/contributors.html b/contributors.html index feb8710..72f4d2c 100644 --- a/contributors.html +++ b/contributors.html @@ -4,7 +4,7 @@ - Contributors — DeTrusty 0.15.6 documentation + Contributors — DeTrusty 0.16.0 documentation @@ -34,7 +34,7 @@
    - 0.15.6 + 0.16.0
    diff --git a/decomposition.html b/decomposition.html index 34e04be..e03309d 100644 --- a/decomposition.html +++ b/decomposition.html @@ -4,7 +4,7 @@ - Decomposition Types — DeTrusty 0.15.6 documentation + Decomposition Types — DeTrusty 0.16.0 documentation @@ -34,7 +34,7 @@
    - 0.15.6 + 0.16.0
    diff --git a/genindex.html b/genindex.html index cb83d9c..3b1f5d1 100644 --- a/genindex.html +++ b/genindex.html @@ -3,7 +3,7 @@ - Index-Template — DeTrusty 0.15.6 documentation + Index-Template — DeTrusty 0.16.0 documentation @@ -31,7 +31,7 @@
    - 0.15.6 + 0.16.0
    diff --git a/index.html b/index.html index 596a4de..6764668 100644 --- a/index.html +++ b/index.html @@ -4,7 +4,7 @@ - DeTrusty — DeTrusty 0.15.6 documentation + DeTrusty — DeTrusty 0.16.0 documentation @@ -33,7 +33,7 @@
    - 0.15.6 + 0.16.0
    diff --git a/library.html b/library.html index 49460f2..25ac9dc 100644 --- a/library.html +++ b/library.html @@ -4,7 +4,7 @@ - DeTrusty as a Library — DeTrusty 0.15.6 documentation + DeTrusty as a Library — DeTrusty 0.16.0 documentation @@ -34,7 +34,7 @@
    - 0.15.6 + 0.16.0
    @@ -164,7 +164,7 @@

    Executing Queriesrun_query for executing SPARQL queries.

    -run_query(query, decomposition_type='STAR', sparql_one_dot_one=None, config=None, join_stars_locally=True, print_result=True, yasqe=False)
    +run_query(query, decomposition_type='STAR', sparql_one_dot_one=None, config=<DeTrusty.Molecule.MTManager.Config object>, join_stars_locally=True, print_result=True, yasqe=False)

    Executes a SPARQL query over a federation of SPARQL endpoints.

    The SPARQL query is decomposed based on the specified decomposition type. DeTrusty identifies the possible sources for each sub-query using the diff --git a/objects.inv b/objects.inv index c76bc529ccf83940786c2a9dbf0c2e847f95b565..5b0c339eba3b28f4c374290ea1c98f7787db18fd 100644 GIT binary patch delta 14 VcmZo=Ze^Ze&upe=u+hnx5da-l1Fir7 delta 14 VcmZo=Ze^Ze&upq^w$aI%5da-+1G4}C diff --git a/reference.html b/reference.html index 24ae683..1640db7 100644 --- a/reference.html +++ b/reference.html @@ -4,7 +4,7 @@ - References — DeTrusty 0.15.6 documentation + References — DeTrusty 0.16.0 documentation @@ -33,7 +33,7 @@

    - 0.15.6 + 0.16.0
    diff --git a/search.html b/search.html index b7d5b79..9b5a10f 100644 --- a/search.html +++ b/search.html @@ -3,7 +3,7 @@ - Search — DeTrusty 0.15.6 documentation + Search — DeTrusty 0.16.0 documentation @@ -34,7 +34,7 @@
    - 0.15.6 + 0.16.0
    diff --git a/searchindex.js b/searchindex.js index 12c960f..a1ac16b 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["changelog", "contributors", "decomposition", "index", "library", "reference", "service", "source_description"], "filenames": ["changelog.rst", "contributors.rst", "decomposition.rst", "index.rst", "library.rst", "reference.rst", "service.rst", "source_description.rst"], "titles": ["Changelog", "Contributors", "Decomposition Types", "DeTrusty", "DeTrusty as a Library", "References", "DeTrusty as a Service", "Source Descriptions"], "terms": {"fix": 0, "variabl": [0, 6], "respons": [0, 4, 6], "header": 0, "queri": [0, 3, 5, 7], "aggreg": [0, 1], "alia": 0, "includ": [0, 4, 6], "project": [0, 2, 4], "add": 0, "more": [0, 4, 6, 7], "function": [0, 3, 4], "config": [0, 4, 6], "class": [0, 2, 7], "order": [0, 2, 4, 6], "avoid": [0, 4], "direct": [0, 2, 4], "access": [0, 4, 6], "its": [0, 3, 4, 6, 7], "attribut": 0, "move": 0, "version": [0, 3, 4], "inform": [0, 7], "insid": [0, 6], "packag": [0, 4, 6], "favicon": 0, "page": [0, 5], "serv": [0, 2, 4, 7], "when": [0, 2, 4, 6, 7], "run": [0, 4, 6], "detrusti": [0, 2, 7], "servic": [0, 3, 4], "complet": 0, "string": [0, 4, 6], "represent": [0, 2, 4], "also": [0, 4, 6, 7], "group": [0, 1, 4, 5], "BY": [0, 1, 2, 4], "have": [0, 1, 3, 4, 6], "limit": [0, 6], "offset": 0, "check": [0, 2], "us": [0, 3, 4, 6], "streamhandl": 0, "logger": 0, "filehandl": 0, "cannot": [0, 2], "establish": 0, "result": [0, 2, 3, 4, 6], "format": [0, 6], "issu": [0, 2, 4], "while": [0, 4, 7], "creat": [0, 2], "sourc": [0, 2, 5], "descript": 0, "merg": [0, 2], "parser": [0, 4, 6], "onli": [0, 2, 3, 4], "one": [0, 2, 4, 6, 7], "now": [0, 3, 4], "henc": [0, 2], "deprec": [0, 4], "sparql_one_dot_on": [0, 4], "paramet": [0, 4], "run_queri": [0, 4], "support": [0, 3, 4, 6], "pars": [0, 4], "sparql": [0, 2, 3, 4, 5, 6, 7], "comment": 0, "count": 0, "complex": [0, 1], "express": [0, 1], "updat": 0, "return": [0, 2, 4, 6], "match": [0, 6], "specif": [0, 4], "i": [0, 2, 3, 4, 6, 7], "e": [0, 3, 4, 6], "type": [0, 4, 6], "datatyp": [0, 1], "just": [0, 6, 7], "valu": [0, 1, 2, 4, 6], "minor": 0, "implicit": 0, "error": [0, 4], "execut": [0, 2], "rdf": [0, 3, 4, 5, 7], "statement": [0, 2, 4], "non": [0, 2], "option": [0, 4, 6], "filter": [0, 4], "uri": [0, 4, 6], "over": [0, 4], "wrong": [0, 4], "split": [0, 2], "claus": [0, 1, 3, 4], "multipl": [0, 2], "throw": 0, "ar": [0, 2, 3, 4, 7], "defin": 0, "bodi": 0, "adjust": 0, "xorderbi": 0, "argument": 0, "create_rdfmt": [0, 4, 6], "py": [0, 6], "docker": [0, 6], "python": [0, 4], "chang": [0, 2, 4, 6], "extens": 0, "jinja": 0, "templat": [0, 4, 5, 7], "url": [0, 4, 6, 7], "setup": 0, "plan": [0, 2], "which": [0, 4, 6, 7], "implement": [0, 2, 3, 4, 6], "choos": 0, "document": [0, 7], "github": [0, 6], "featur": [0, 3], "get": [0, 4], "file": [0, 4, 6], "via": [0, 4, 6], "request": [0, 4, 6], "from": [0, 2, 3, 5, 6], "sub": [0, 4], "select": [0, 2, 3, 4, 6], "depend": 0, "decomposit": [0, 4, 6], "molecul": [0, 4, 5, 7], "repeat": 0, "predic": [0, 2, 7], "consid": [0, 2, 4], "case": [0, 6], "extract": 0, "an": [0, 6, 7], "rml": [0, 6], "map": [0, 6], "endpoint": [0, 2, 3, 6], "duplic": 0, "bind": [0, 1, 2, 4, 6], "nhjf": 0, "json": [0, 4, 6], "where": [0, 2, 4, 6], "tripl": [0, 4], "list": [0, 3, 4, 6], "search": 0, "prefix": [0, 2, 4], "oper": [0, 3], "name": [0, 3, 4, 7], "xfilter": 0, "displai": 0, "constant": 0, "wise": [0, 4], "path": [0, 4, 6], "pip": [0, 4], "visual": [0, 2], "rout": [0, 4, 6], "query_plan": [0, 6], "ad": 0, "collect": [0, 2, 4, 6], "wikidata": [0, 2, 4], "disabl": 0, "interlink": [0, 4, 5], "push": 0, "down": 0, "some": [0, 2, 3, 7], "miss": [0, 3], "modul": [0, 4], "abil": 0, "process": [0, 4, 5], "simpl": [0, 7], "year": [0, 2, 4], "improv": 0, "xunion": 0, "differ": [0, 2, 3, 4, 7], "data": [0, 4, 5], "wrapper": [0, 7], "base": [0, 2, 4, 5, 6, 7], "imag": [0, 2, 6], "bug": 0, "empti": 0, "cach": 0, "yasgui": [0, 4, 6], "restrict": 0, "metadata": [0, 4, 6], "quot": 0, "special": 0, "char": 0, "basic": [0, 4], "authent": [0, 4], "base64": [0, 4], "encod": [0, 4, 7], "possibl": [0, 4], "configur": [0, 4], "instanc": [0, 6, 7], "method": [0, 4], "save": [0, 4], "bullsey": 0, "hint": 0, "object": [0, 4], "import": [0, 4], "mtcreation": [0, 4], "rais": 0, "except": [0, 4], "dure": [0, 2, 4], "instead": [0, 4], "log": 0, "them": [0, 4], "dictionari": [0, 4, 6], "prevent": 0, "gener": [0, 4, 6], "parsetab": 0, "renam": 0, "creation": [0, 4], "rdfmt": [0, 4, 6], "exclud": 0, "test": 0, "capabl": 0, "privat": [0, 7], "knowledg": [0, 2, 4, 5, 7], "graph": [0, 2, 3, 4, 5, 7], "gather": 0, "ascii": 0, "charact": 0, "directori": [0, 6], "exist": [0, 4], "writeabl": 0, "output": [0, 4, 6], "befor": [0, 4], "keep": [0, 7], "all": [0, 2, 4, 6], "pattern": [0, 2, 4, 5], "decompos": [0, 2, 4], "remov": 0, "flask": [0, 6], "librari": [0, 6], "incorrect": 0, "set": [0, 4], "payload": 0, "work": [0, 6], "http": [0, 2, 4, 5, 6, 7], "org": [0, 2, 4, 5], "asterisk": 0, "retriev": [0, 2, 4, 6], "behind": 0, "proxi": 0, "join": [0, 2, 4, 5], "remot": [0, 4], "web": [0, 4, 5], "interfac": [0, 4], "instal": 0, "new": [0, 6], "exclus": [0, 4], "first": 0, "feder": [0, 2, 3, 4, 5, 6, 7], "engin": [0, 3, 4, 6], "philipp": [1, 5], "d": [1, 5, 6], "rohd": [1, 5], "orcid": 1, "0000": 1, "0002": 1, "9835": 1, "4354": 1, "avellino": 1, "mazen": 1, "bechara": 1, "0009": 1, "7554": 1, "3935": 1, "gabriela": 1, "ydler": 1, "logo": 1, "The": [2, 3, 4, 5, 6, 7], "primari": 2, "goal": [2, 4], "transform": [2, 4], "high": 2, "level": [2, 4], "intern": [2, 4], "syntact": 2, "In": [2, 4, 5, 6, 7], "distribut": [2, 7], "system": [2, 5, 7], "part": [2, 3, 7], "restructur": 2, "origin": 2, "thi": [2, 3, 4, 6, 7], "done": 2, "sinc": [2, 4, 7], "most": 2, "scenario": [2, 4], "abl": [2, 4], "answer": [2, 4, 7], "There": [2, 7], "sever": [2, 4, 7], "approach": [2, 5, 7], "how": [2, 4], "build": [2, 6], "follow": [2, 3, 4, 6, 7], "describ": [2, 6], "At": [2, 3], "end": 2, "present": 2, "provid": [2, 4], "each": [2, 4], "separ": 2, "singl": 2, "mai": 2, "lead": [2, 4], "veri": 2, "expens": 2, "2": [2, 5, 6], "wai": [2, 4, 6], "consist": 2, "can": [2, 3, 4, 6, 7], "occur": 2, "produc": [2, 4], "3": [2, 5, 6], "same": [2, 4], "subject": 2, "form": [2, 4], "mitig": 2, "previous": [2, 4], "mention": [2, 6], "belong": 2, "prefer": 2, "accord": 2, "abov": [2, 6], "howev": [2, 3], "thei": [2, 4], "exce": 2, "perform": [2, 4, 6], "effici": [2, 5], "reduc": 2, "size": 2, "intermedi": 2, "significantli": 2, "characterist": 2, "coypu": 2, "statist": 2, "time": [2, 4, 6], "were": [2, 4], "2023": [2, 5], "10": [2, 4, 5], "691": 2, "161": 2, "990": 2, "328": 2, "5": 2, "733": 2, "world": [2, 4], "bank": [2, 4], "250": 2, "097": 2, "215": 2, "23": 2, "131": 2, "old": 2, "272": 2, "348": 2, "q6256": 2, "countri": [2, 4], "1": [2, 3, 4, 5, 7], "519": 2, "287": 2, "369": 2, "592": 2, "gdp": 2, "per": [2, 6], "capita": 2, "carbon": [2, 4], "emiss": 2, "germani": 2, "show": [2, 4], "wb": [2, 4], "worldbank": [2, 4], "dc": [2, 4], "purl": [2, 4], "element": [2, 4], "www": [2, 4], "w3": [2, 4], "2006": [2, 4], "wdt": [2, 4], "prop": [2, 4], "p": [2, 4], "pq": [2, 4], "qualifi": [2, 4], "owl": [2, 4], "2002": [2, 4], "07": [2, 4], "avg": [2, 4], "popul": [2, 4], "AS": [2, 4], "gdp_per_capita": [2, 4], "value1": [2, 4], "1000000": [2, 4], "carbon_per_capita": [2, 4], "indic": [2, 4, 6], "annualindicatorentri": [2, 4], "hasind": [2, 4], "ny": [2, 4], "mktp": [2, 4], "cd": [2, 4, 6], "hascountri": [2, 4], "hasvalu": [2, 4], "identifi": [2, 4], "deu": [2, 4], "indicator1": [2, 4], "en": [2, 4], "atm": [2, 4], "co2e": [2, 4], "kt": [2, 4], "country1": [2, 4], "countrywiki": [2, 4], "p298": [2, 4], "p1082": [2, 4], "itemp": [2, 4], "p585": [2, 4], "click": 2, "enlarg": 2, "view": 2, "detail": 2, "cardin": [2, 4, 6], "0": [2, 4, 6, 7], "hour": 2, "timeout": 2, "76": 2, "318": 2, "second": [2, 4, 6], "18": 2, "35": 2, "445": 2, "9": 2, "816": 2, "slow": 2, "due": 2, "public": [2, 4], "unfortun": 2, "These": 2, "finish": 2, "sent": [2, 4], "fail": 2, "60": 2, "out": 2, "after": [2, 6], "long": 2, "mani": 2, "larg": [2, 5], "stage": 3, "other": [3, 4, 7], "through": 3, "focu": 3, "explain": [3, 4], "trustworthi": 3, "under": 3, "activ": 3, "develop": 3, "current": [3, 4, 6], "protocol": [3, 4], "you": [3, 4, 6], "specifi": [3, 4, 6], "manual": 3, "about": [3, 4, 6, 7], "been": 3, "yet": 3, "might": [3, 4], "exhaust": 3, "pleas": [3, 4], "let": 3, "u": 3, "know": [3, 7], "we": [3, 4, 7], "someth": [3, 4], "condit": 3, "g": 3, "IF": 3, "bound": 3, "coalesc": 3, "built": 3, "isiri": 3, "strlen": 3, "ab": 3, "floor": 3, "month": 3, "md5": 3, "dataset": [3, 7], "If": [4, 6], "want": [4, 6], "download": [4, 6], "python3": [4, 6], "manag": [4, 6], "": [4, 5, 6], "ply": [4, 6], "enabl": [4, 6], "rdflib": [4, 6], "your": [4, 6], "step": [4, 6], "git": [4, 6], "clone": [4, 6], "com": [4, 6, 7], "sdm": [4, 6], "tib": [4, 6], "m": [4, 5], "without": 4, "explicitli": 4, "repositori": [4, 6], "egg": 4, "easiest": [4, 6], "section": 4, "refer": [4, 7], "reader": [4, 7], "chapter": 4, "what": 4, "why": 4, "need": [4, 6, 7], "addition": [4, 6], "overview": 4, "offer": [4, 6], "decomposition_typ": 4, "star": [4, 6], "none": 4, "join_stars_loc": 4, "true": [4, 6], "print_result": 4, "yasq": 4, "fals": 4, "contain": [4, 6], "str": 4, "hold": 4, "shape": [4, 6], "eg": 4, "default": 4, "bool": 4, "15": 4, "No": 4, "longer": 4, "mtmanag": 4, "should": [4, 6], "attempt": 4, "load": [4, 6], "whether": 4, "mean": 4, "being": 4, "behavior": 4, "actual": 4, "like": 4, "wa": [4, 6], "workaround": 4, "valid": 4, "omit": 4, "A": [4, 5, 6], "addit": 4, "It": 4, "messag": 4, "field": 4, "went": 4, "dict": 4, "exampl": [4, 6, 7], "call": [4, 6, 7], "assum": [4, 6], "person": [4, 7], "rq": 4, "get_config": 4, "config_input": 4, "input": [4, 6], "either": 4, "later": 4, "main": 4, "usag": 4, "read": 4, "store": 4, "reus": 4, "repres": 4, "so": 4, "did": 4, "rdftm": 4, "see": [4, 7], "gain": 4, "hand": 4, "experi": 4, "coupl": 4, "particular": 4, "relat": [4, 5, 7], "kg": 4, "4": [4, 5], "below": [4, 7], "make": [4, 6], "sure": 4, "lab": 4, "eu": [4, 6], "covid19kg": 4, "dbpedia": 4, "excret": 4, "rate": 4, "metabol": 4, "administr": 4, "treatment": [4, 5, 6], "treat": 4, "dbp": 4, "properti": [4, 7], "k4covid": [4, 6], "research": [4, 5, 6], "vocab": [4, 6], "entiti": [4, 6], "distinct": [4, 6], "sameascoviddrug": 4, "hascoviddrug": [4, 6], "coviddrug": [4, 6], "hascomorbid": 4, "hascomorbiditydrug": 4, "comorbiditydrug": 4, "hascuiannot": 4, "cuicomorbiditydrug": 4, "samea": 4, "sameascomorbiditydrug": 4, "cuicoviddrug": 4, "routesofadministr": 4, "raw": 4, "githubusercont": 4, "master": 4, "print": 4, "chembl": 4, "iddrug": 4, "activeingredi": 4, "mass": 4, "p592": 4, "p3780": 4, "p2067": 4, "kegg": 4, "smile": 4, "notat": 4, "trade": 4, "dbo": 4, "ontologi": 4, "dbdrugbank": 4, "dbsmile": 4, "tradenam": 4, "dbcheml": 4, "dbkegg": 4, "drugbank": 4, "diseas": 4, "label": 4, "icd": 4, "mesh": 4, "risk": 4, "sameascomorbid": 4, "icd10": 4, "annotationcomorbid": 4, "meshid": 4, "union": 4, "worldbank_endpoint": 4, "report": 4, "2000": 4, "01": 4, "schema": 4, "country_cod": 4, "country_nam": 4, "year_exp_wb": 4, "exp_wb": 4, "year_exp": 4, "exp_wiki": 4, "sameascountri": 4, "hasannualindicatorentri": 4, "annualind": 4, "sp": 4, "dyn": 4, "le00": 4, "IN": 4, "p2250": 4, "itemlifeexpect": 4, "suppli": 4, "locat": 4, "won": 4, "t": [4, 6], "jsonconfig": 4, "between": 4, "thu": 4, "suit": 4, "purpos": 4, "remaind": 4, "comput": 4, "snippet": 4, "two": 4, "url_to_endpoint_1": 4, "url_to_endpoint_2": 4, "port": 4, "altern": 4, "pass": 4, "structur": 4, "help": 4, "prior": 4, "write": 4, "savetofil": 4, "new_mt": 4, "start": [4, 6], "6": 4, "handl": 4, "well": [4, 7], "token": 4, "server": [4, 6], "access_token": 4, "lifespan": 4, "expires_in": 4, "slightli": 4, "compar": 4, "keycloak": 4, "url_to_token_serv": 4, "usernam": [4, 7], "your_usernam": 4, "password": [4, 7], "your_password": 4, "kei": [4, 6], "itself": 4, "pair": 4, "credenti": 4, "simpli": [4, 6], "necessari": 4, "consider": 4, "increas": 4, "Of": 4, "cours": 4, "feasibl": 4, "file1": 4, "file2": 4, "7": 4, "full": 4, "classa": 4, "classb": 4, "kemel": 5, "endri": [5, 7], "mikhail": 5, "galkin": 5, "ioanna": 5, "lytra": 5, "moham": 5, "nadjib": 5, "mami": 5, "maria": 5, "esther": 5, "vidal": 5, "s\u00f6ren": 5, "auer": 5, "bridg": 5, "transact": 5, "scale": 5, "center": 5, "xxxix": 5, "volum": 5, "11310": 5, "42": 5, "springer": 5, "berlin": 5, "heidelberg": 5, "11": 5, "2018": 5, "doi": 5, "1007": 5, "978": 5, "662": 5, "58415": 5, "6_1": 5, "andrea": 5, "schwart": 5, "peter": 5, "haas": 5, "katja": 5, "hose": 5, "ralf": 5, "schenkel": 5, "michael": 5, "schmidt": 5, "fedx": 5, "optim": 5, "techniqu": 5, "link": 5, "semant": 5, "iswc": 5, "2011": 5, "601": 5, "616": 5, "642": 5, "25073": 5, "6_38": 5, "edna": 5, "ruckhau": 5, "toma": 5, "lampo": 5, "amad": 5, "\u0131": 5, "mart": 5, "nez": 5, "javier": 5, "sierra": 5, "axel": 5, "poller": 5, "applic": 5, "eswc": 5, "2010": 5, "228": 5, "242": 5, "13486": 5, "9_16": 5, "ahmad": 5, "sakor": 5, "samaneh": 5, "jozashoori": 5, "emeti": 5, "niazmand": 5, "ariam": 5, "riva": 5, "konstantino": 5, "bougiatioti": 5, "foti": 5, "aisopo": 5, "enriqu": 5, "iglesia": 5, "trupti": 5, "padiya": 5, "anastasia": 5, "krithara": 5, "georgio": 5, "palioura": 5, "knowledge4covid": 5, "19": [5, 6], "construct": 5, "covid": [5, 6], "variou": 5, "analyz": 5, "toxic": 5, "journal": 5, "1016": 5, "j": [5, 6], "websem": 5, "2022": 5, "100760": 5, "power": 6, "javascript": 6, "gunicorn": 6, "sdmtib": 6, "pypi": 6, "pull": 6, "latest": 6, "root": 6, "As": 6, "state": 6, "note": 6, "own": 6, "command": 6, "compos": 6, "f": 6, "yml": 6, "txt": 6, "put": 6, "line": 6, "exec": 6, "bash": 6, "c": 6, "restart": 6, "worker": 6, "take": 6, "effect": 6, "restart_work": 6, "sh": 6, "advanc": 6, "flag": 6, "localhost": 6, "5000": 6, "404": 6, "found": 6, "try": 6, "thank": 6, "post": 6, "favorit": 6, "browser": 6, "navig": 6, "your_domain": 6, "tld": 6, "enter": 6, "hit": 6, "button": 6, "doe": 6, "allow": 6, "number": 6, "curl": 6, "x": 6, "v0": 6, "12": 6, "execution_tim": 6, "07238245010375977": 6, "head": 6, "var": 6, "output_vers": 6, "__meta__": 6, "is_verifi": 6, "db00207": 6, "db00381": 6, "db00503": 6, "integ": 6, "float": 6, "give": 6, "ha": [6, 7], "spent": 6, "differenti": 6, "possibli": 6, "futur": 6, "verif": 6, "verifi": 6, "seen": 6, "than": 7, "decid": 7, "contribut": 7, "throughout": 7, "text": 7, "come": 7, "index": 7, "track": 7, "propos": 7, "et": 7, "al": 7, "fine": 7, "grain": 7, "connect": 7, "correspond": 7, "said": 7, "inher": 7, "record": 7, "domain": 7, "rang": 7, "For": 7, "formal": 7, "definit": 7, "foaf": 7, "roottyp": 7, "xmln": 7, "interest": 7, "linkedto": 7, "urlparam": 7, "example_us": 7, "1234": 7, "topic": 7}, "objects": {}, "objtypes": {}, "objnames": {}, "titleterms": {"changelog": 0, "v0": 0, "15": 0, "6": 0, "08": 0, "mai": 0, "2024": 0, "5": 0, "07": 0, "4": 0, "12": 0, "apr": 0, "3": 0, "05": 0, "2": 0, "13": 0, "feb": 0, "1": 0, "0": 0, "01": 0, "dec": 0, "2023": 0, "14": 0, "28": 0, "nov": 0, "25": 0, "oct": 0, "29": 0, "jun": 0, "21": 0, "17": 0, "02": 0, "11": 0, "27": 0, "23": 0, "03": 0, "10": 0, "31": 0, "jan": 0, "9": 0, "06": 0, "2022": 0, "24": 0, "8": 0, "7": 0, "30": 0, "sep": 0, "19": [0, 4], "16": 0, "aug": 0, "jul": 0, "26": 0, "22": 0, "20": 0, "2020": 0, "contributor": 1, "student": 1, "assist": 1, "alphabet": 1, "surnam": 1, "decomposit": 2, "type": 2, "tripl": 2, "wise": 2, "exclus": 2, "group": 2, "star": 2, "shape": 2, "sub": 2, "queri": [2, 4, 6], "combin": 2, "comparison": 2, "us": 2, "an": [2, 4], "exampl": 2, "detrusti": [3, 4, 6], "librari": 4, "instal": [4, 6], "requir": [4, 6], "local": [4, 6], "sourc": [4, 6, 7], "code": [4, 6], "github": 4, "pypi": 4, "execut": [4, 6], "knowledge4covid": 4, "q1": 4, "covid": 4, "drug": 4, "patient": 4, "asthma": 4, "q2": 4, "cardiopathi": 4, "q3": 4, "detail": 4, "inform": 4, "q4": 4, "comorbid": 4, "q5": 4, "coypu": 4, "life": 4, "expect": 4, "2017": 4, "gdp": 4, "co2": 4, "emiss": 4, "per": 4, "capita": 4, "germani": 4, "creat": [4, 6], "descript": [4, 6, 7], "standard": 4, "case": 4, "privat": 4, "endpoint": 4, "from": 4, "rml": 4, "map": 4, "restrict": 4, "class": 4, "refer": 5, "servic": 6, "dockerhub": 6, "set": 6, "up": 6, "updat": 6, "web": 6, "interfac": 6, "plot": 6, "plan": 6, "rest": 6, "api": 6, "version": 6}, "envversion": {"sphinx.domains.c": 2, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 8, "sphinx.domains.index": 1, "sphinx.domains.javascript": 2, "sphinx.domains.math": 2, "sphinx.domains.python": 3, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinxcontrib.bibtex": 9, "sphinx": 57}, "alltitles": {"Changelog": [[0, "changelog"]], "v0.15.6 - 08 May 2024": [[0, "v0-15-6-08-may-2024"]], "v0.15.5 - 07 May 2024": [[0, "v0-15-5-07-may-2024"]], "v0.15.4 - 12 Apr 2024": [[0, "v0-15-4-12-apr-2024"]], "v0.15.3 - 05 Apr 2024": [[0, "v0-15-3-05-apr-2024"]], "v0.15.2 - 13 Feb 2024": [[0, "v0-15-2-13-feb-2024"]], "v0.15.1 - 07 Feb 2024": [[0, "v0-15-1-07-feb-2024"]], "v0.15.0 - 01 Dec 2023": [[0, "v0-15-0-01-dec-2023"]], "v0.14.0 - 28 Nov 2023": [[0, "v0-14-0-28-nov-2023"]], "v0.13.2 - 01 Nov 2023": [[0, "v0-13-2-01-nov-2023"]], "v0.13.1 - 25 Oct 2023": [[0, "v0-13-1-25-oct-2023"]], "v0.13.0 - 13 Oct 2023": [[0, "v0-13-0-13-oct-2023"]], "v0.12.3 - 29 Jun 2023": [[0, "v0-12-3-29-jun-2023"]], "v0.12.2 - 21 Jun 2023": [[0, "v0-12-2-21-jun-2023"]], "v0.12.1 - 17 May 2023": [[0, "v0-12-1-17-may-2023"]], "v0.12.0 - 02 May 2023": [[0, "v0-12-0-02-may-2023"]], "v0.11.3 - 27 Apr 2023": [[0, "v0-11-3-27-apr-2023"]], "v0.11.2 - 23 Feb 2023": [[0, "v0-11-2-23-feb-2023"]], "v0.11.1 - 14 Feb 2023": [[0, "v0-11-1-14-feb-2023"]], "v0.11.0 - 03 Feb 2023": [[0, "v0-11-0-03-feb-2023"]], "v0.10.0 - 31 Jan 2023": [[0, "v0-10-0-31-jan-2023"]], "v0.9.1 - 06 Dec 2022": [[0, "v0-9-1-06-dec-2022"]], "v0.9.0 - 24 Nov 2022": [[0, "v0-9-0-24-nov-2022"]], "v0.8.0 - 05 Nov 2022": [[0, "v0-8-0-05-nov-2022"]], "v0.7.2 - 30 Sep 2022": [[0, "v0-7-2-30-sep-2022"]], "v0.7.1 \u2013 19 Sep 2022": [[0, "v0-7-1-19-sep-2022"]], "v0.7.0 \u2013 17 Sep 2022": [[0, "v0-7-0-17-sep-2022"]], "v0.6.4 \u2013 16 Sep 2022": [[0, "v0-6-4-16-sep-2022"]], "v0.6.3 \u2013 05 Sep 2022": [[0, "v0-6-3-05-sep-2022"]], "v0.6.2 \u2013 31 Aug 2022": [[0, "v0-6-2-31-aug-2022"]], "v0.6.1 \u2013 16 Aug 2022": [[0, "v0-6-1-16-aug-2022"]], "v0.6.0 \u2013 13 Aug 2022": [[0, "v0-6-0-13-aug-2022"]], "v0.5.1 \u2013 27 Jul 2022": [[0, "v0-5-1-27-jul-2022"]], "v0.5.0 \u2013 26 Jul 2022": [[0, "v0-5-0-26-jul-2022"]], "v0.4.5 \u2013 30 Jun 2022": [[0, "v0-4-5-30-jun-2022"]], "v0.4.4 \u2013 14 Jun 2022": [[0, "v0-4-4-14-jun-2022"]], "v0.4.3 \u2013 22 May 2022": [[0, "v0-4-3-22-may-2022"]], "v0.4.2 \u2013 21 May 2022": [[0, "v0-4-2-21-may-2022"]], "v0.4.1 \u2013 20 May 2022": [[0, "v0-4-1-20-may-2022"]], "v0.4.0 \u2013 20 May 2022": [[0, "v0-4-0-20-may-2022"]], "v0.3.0 \u2013 19 May 2022": [[0, "v0-3-0-19-may-2022"]], "v0.2.0 \u2013 07 Feb 2022": [[0, "v0-2-0-07-feb-2022"]], "v0.1.0 \u2013 17 Dec 2020": [[0, "v0-1-0-17-dec-2020"]], "Contributors": [[1, "contributors"]], "Student Assistants (alphabetical by surname)": [[1, "student-assistants-alphabetical-by-surname"]], "Decomposition Types": [[2, "decomposition-types"]], "Triple-wise": [[2, "triple-wise"]], "Exclusive Groups": [[2, "exclusive-groups"]], "Star-shaped Sub-queries": [[2, "star-shaped-sub-queries"]], "Combined Star-shaped Sub-queries": [[2, "combined-star-shaped-sub-queries"]], "Comparison using an Example": [[2, "comparison-using-an-example"]], "DeTrusty": [[3, "detrusty"]], "DeTrusty as a Library": [[4, "detrusty-as-a-library"]], "Installation": [[4, "installation"], [6, "installation"]], "Requirements": [[4, "requirements"], [6, "requirements"]], "Local Source Code": [[4, "local-source-code"], [6, "local-source-code"]], "GitHub": [[4, "github"]], "PyPI": [[4, "pypi"]], "Executing Queries": [[4, "executing-queries"]], "Knowledge4COVID-19": [[4, "knowledge4covid-19"]], "Q1. COVID-19 Drugs for Patients with Asthma": [[4, "q1-covid-19-drugs-for-patients-with-asthma"]], "Q2. COVID-19 Drugs for Patients with a Cardiopathy": [[4, "q2-covid-19-drugs-for-patients-with-a-cardiopathy"]], "Q3. Detailed COVID-19 Drug Information for Patients with Asthma": [[4, "q3-detailed-covid-19-drug-information-for-patients-with-asthma"]], "Q4. COVID-19 Comorbidity Information": [[4, "q4-covid-19-comorbidity-information"]], "Q5. COVID-19 Comorbidity Drugs": [[4, "q5-covid-19-comorbidity-drugs"]], "CoyPu": [[4, "coypu"]], "Q1. Life Expectancy in 2017": [[4, "q1-life-expectancy-in-2017"]], "Q2. GDP and CO2 Emission per Capita in Germany": [[4, "q2-gdp-and-co2-emission-per-capita-in-germany"]], "Creating Source Descriptions": [[4, "id3"]], "Standard Case": [[4, "standard-case"]], "Private Endpoints": [[4, "private-endpoints"]], "Source Descriptions from RML Mappings": [[4, "source-descriptions-from-rml-mappings"]], "Restricting Classes of an Endpoint": [[4, "restricting-classes-of-an-endpoint"]], "References": [[5, "references"]], "DeTrusty as a Service": [[6, "detrusty-as-a-service"]], "DockerHub": [[6, "dockerhub"]], "Setting up DeTrusty": [[6, "setting-up-detrusty"]], "Creating/Updating Source Descriptions": [[6, "creating-updating-source-descriptions"]], "Web Interface": [[6, "web-interface"]], "Web Interface: Executing Queries": [[6, "web-interface-executing-queries"]], "Web Interface: Plotting Query Plans": [[6, "web-interface-plotting-query-plans"]], "RESTful API": [[6, "restful-api"]], "API: DeTrusty Version": [[6, "api-detrusty-version"]], "API: Executing Queries": [[6, "api-executing-queries"]], "Source Descriptions": [[7, "source-descriptions"]]}, "indexentries": {}}) \ No newline at end of file +Search.setIndex({"docnames": ["changelog", "contributors", "decomposition", "index", "library", "reference", "service", "source_description"], "filenames": ["changelog.rst", "contributors.rst", "decomposition.rst", "index.rst", "library.rst", "reference.rst", "service.rst", "source_description.rst"], "titles": ["Changelog", "Contributors", "Decomposition Types", "DeTrusty", "DeTrusty as a Library", "References", "DeTrusty as a Service", "Source Descriptions"], "terms": {"add": 0, "physic": 0, "oper": [0, 3], "nestedhashjoinvalu": 0, "nhjv": 0, "nestedhashoptionalvalu": 0, "nhov": 0, "us": [0, 3, 4, 6], "nest": 0, "hash": 0, "join": [0, 2, 4, 5], "option": [0, 4, 6], "instead": [0, 4], "filter": [0, 4], "variant": 0, "fix": 0, "variabl": [0, 6], "respons": [0, 4, 6], "header": 0, "queri": [0, 3, 5, 7], "aggreg": [0, 1], "alia": 0, "includ": [0, 4, 6], "project": [0, 2, 4], "more": [0, 4, 6, 7], "function": [0, 3, 4], "config": [0, 4, 6], "class": [0, 2, 7], "order": [0, 2, 4, 6], "avoid": [0, 4], "direct": [0, 2, 4], "access": [0, 4, 6], "its": [0, 3, 4, 6, 7], "attribut": 0, "move": 0, "version": [0, 3, 4], "inform": [0, 7], "insid": [0, 6], "packag": [0, 4, 6], "favicon": 0, "page": [0, 5], "serv": [0, 2, 4, 7], "when": [0, 2, 4, 6, 7], "run": [0, 4, 6], "detrusti": [0, 2, 7], "servic": [0, 3, 4], "complet": 0, "string": [0, 4, 6], "represent": [0, 2, 4], "also": [0, 4, 6, 7], "group": [0, 1, 4, 5], "BY": [0, 1, 2, 4], "have": [0, 1, 3, 4, 6], "limit": [0, 6], "offset": 0, "check": [0, 2], "streamhandl": 0, "logger": 0, "filehandl": 0, "cannot": [0, 2], "establish": 0, "result": [0, 2, 3, 4, 6], "format": [0, 6], "issu": [0, 2, 4], "while": [0, 4, 7], "creat": [0, 2], "sourc": [0, 2, 5], "descript": 0, "merg": [0, 2], "parser": [0, 4, 6], "onli": [0, 2, 3, 4], "one": [0, 2, 4, 6, 7], "now": [0, 3, 4], "henc": [0, 2], "deprec": [0, 4], "sparql_one_dot_on": [0, 4], "paramet": [0, 4], "run_queri": [0, 4], "support": [0, 3, 4, 6], "pars": [0, 4], "sparql": [0, 2, 3, 4, 5, 6, 7], "comment": 0, "count": 0, "complex": [0, 1], "express": [0, 1], "updat": 0, "return": [0, 2, 4, 6], "match": [0, 6], "specif": [0, 4], "i": [0, 2, 3, 4, 6, 7], "e": [0, 3, 4, 6], "type": [0, 4, 6], "datatyp": [0, 1], "just": [0, 6, 7], "valu": [0, 1, 2, 4, 6], "minor": 0, "implicit": 0, "error": [0, 4], "execut": [0, 2], "rdf": [0, 3, 4, 5, 7], "statement": [0, 2, 4], "non": [0, 2], "uri": [0, 4, 6], "over": [0, 4], "wrong": [0, 4], "split": [0, 2], "claus": [0, 1, 3, 4], "multipl": [0, 2], "throw": 0, "ar": [0, 2, 3, 4, 7], "defin": 0, "bodi": 0, "adjust": 0, "xorderbi": 0, "argument": 0, "create_rdfmt": [0, 4, 6], "py": [0, 6], "docker": [0, 6], "python": [0, 4], "chang": [0, 2, 4, 6], "extens": 0, "jinja": 0, "templat": [0, 4, 5, 7], "url": [0, 4, 6, 7], "setup": 0, "plan": [0, 2], "which": [0, 4, 6, 7], "implement": [0, 2, 3, 4, 6], "choos": 0, "document": [0, 7], "github": [0, 6], "featur": [0, 3], "get": [0, 4], "file": [0, 4, 6], "via": [0, 4, 6], "request": [0, 4, 6], "from": [0, 2, 3, 5, 6], "sub": [0, 4], "select": [0, 2, 3, 4, 6], "depend": 0, "decomposit": [0, 4, 6], "molecul": [0, 4, 5, 7], "repeat": 0, "predic": [0, 2, 7], "consid": [0, 2, 4], "case": [0, 6], "extract": 0, "an": [0, 6, 7], "rml": [0, 6], "map": [0, 6], "endpoint": [0, 2, 3, 6], "duplic": 0, "bind": [0, 1, 2, 4, 6], "nhjf": 0, "json": [0, 4, 6], "where": [0, 2, 4, 6], "tripl": [0, 4], "list": [0, 3, 4, 6], "search": 0, "prefix": [0, 2, 4], "name": [0, 3, 4, 7], "xfilter": 0, "displai": 0, "constant": 0, "wise": [0, 4], "path": [0, 4, 6], "pip": [0, 4], "visual": [0, 2], "rout": [0, 4, 6], "query_plan": [0, 6], "ad": 0, "collect": [0, 2, 4, 6], "wikidata": [0, 2, 4], "disabl": 0, "interlink": [0, 4, 5], "push": 0, "down": 0, "some": [0, 2, 3, 7], "miss": [0, 3], "modul": [0, 4], "abil": 0, "process": [0, 4, 5], "simpl": [0, 7], "year": [0, 2, 4], "improv": 0, "xunion": 0, "differ": [0, 2, 3, 4, 7], "data": [0, 4, 5], "wrapper": [0, 7], "base": [0, 2, 4, 5, 6, 7], "imag": [0, 2, 6], "bug": 0, "empti": 0, "cach": 0, "yasgui": [0, 4, 6], "restrict": 0, "metadata": [0, 4, 6], "quot": 0, "special": 0, "char": 0, "basic": [0, 4], "authent": [0, 4], "base64": [0, 4], "encod": [0, 4, 7], "possibl": [0, 4], "configur": [0, 4], "instanc": [0, 6, 7], "method": [0, 4], "save": [0, 4], "bullsey": 0, "hint": 0, "object": [0, 4], "import": [0, 4], "mtcreation": [0, 4], "rais": 0, "except": [0, 4], "dure": [0, 2, 4], "log": 0, "them": [0, 4], "dictionari": [0, 4, 6], "prevent": 0, "gener": [0, 4, 6], "parsetab": 0, "renam": 0, "creation": [0, 4], "rdfmt": [0, 4, 6], "exclud": 0, "test": 0, "capabl": 0, "privat": [0, 7], "knowledg": [0, 2, 4, 5, 7], "graph": [0, 2, 3, 4, 5, 7], "gather": 0, "ascii": 0, "charact": 0, "directori": [0, 6], "exist": [0, 4], "writeabl": 0, "output": [0, 4, 6], "befor": [0, 4], "keep": [0, 7], "all": [0, 2, 4, 6], "pattern": [0, 2, 4, 5], "decompos": [0, 2, 4], "remov": 0, "flask": [0, 6], "librari": [0, 6], "incorrect": 0, "set": [0, 4], "payload": 0, "work": [0, 6], "http": [0, 2, 4, 5, 6, 7], "org": [0, 2, 4, 5], "asterisk": 0, "retriev": [0, 2, 4, 6], "behind": 0, "proxi": 0, "remot": [0, 4], "web": [0, 4, 5], "interfac": [0, 4], "instal": 0, "new": [0, 6], "exclus": [0, 4], "first": 0, "feder": [0, 2, 3, 4, 5, 6, 7], "engin": [0, 3, 4, 6], "philipp": [1, 5], "d": [1, 5, 6], "rohd": [1, 5], "orcid": 1, "0000": 1, "0002": 1, "9835": 1, "4354": 1, "avellino": 1, "mazen": 1, "bechara": 1, "0009": 1, "7554": 1, "3935": 1, "gabriela": 1, "ydler": 1, "logo": 1, "The": [2, 3, 4, 5, 6, 7], "primari": 2, "goal": [2, 4], "transform": [2, 4], "high": 2, "level": [2, 4], "intern": [2, 4], "syntact": 2, "In": [2, 4, 5, 6, 7], "distribut": [2, 7], "system": [2, 5, 7], "part": [2, 3, 7], "restructur": 2, "origin": 2, "thi": [2, 3, 4, 6, 7], "done": 2, "sinc": [2, 4, 7], "most": 2, "scenario": [2, 4], "abl": [2, 4], "answer": [2, 4, 7], "There": [2, 7], "sever": [2, 4, 7], "approach": [2, 5, 7], "how": [2, 4], "build": [2, 6], "follow": [2, 3, 4, 6, 7], "describ": [2, 6], "At": [2, 3], "end": 2, "present": 2, "provid": [2, 4], "each": [2, 4], "separ": 2, "singl": 2, "mai": 2, "lead": [2, 4], "veri": 2, "expens": 2, "2": [2, 5, 6], "wai": [2, 4, 6], "consist": 2, "can": [2, 3, 4, 6, 7], "occur": 2, "produc": [2, 4], "3": [2, 5, 6], "same": [2, 4], "subject": 2, "form": [2, 4], "mitig": 2, "previous": [2, 4], "mention": [2, 6], "belong": 2, "prefer": 2, "accord": 2, "abov": [2, 6], "howev": [2, 3], "thei": [2, 4], "exce": 2, "perform": [2, 4, 6], "effici": [2, 5], "reduc": 2, "size": 2, "intermedi": 2, "significantli": 2, "characterist": 2, "coypu": 2, "statist": 2, "time": [2, 4, 6], "were": [2, 4], "2023": [2, 5], "10": [2, 4, 5], "691": 2, "161": 2, "990": 2, "328": 2, "5": 2, "733": 2, "world": [2, 4], "bank": [2, 4], "250": 2, "097": 2, "215": 2, "23": 2, "131": 2, "old": 2, "272": 2, "348": 2, "q6256": 2, "countri": [2, 4], "1": [2, 3, 4, 5, 7], "519": 2, "287": 2, "369": 2, "592": 2, "gdp": 2, "per": [2, 6], "capita": 2, "carbon": [2, 4], "emiss": 2, "germani": 2, "show": [2, 4], "wb": [2, 4], "worldbank": [2, 4], "dc": [2, 4], "purl": [2, 4], "element": [2, 4], "www": [2, 4], "w3": [2, 4], "2006": [2, 4], "wdt": [2, 4], "prop": [2, 4], "p": [2, 4], "pq": [2, 4], "qualifi": [2, 4], "owl": [2, 4], "2002": [2, 4], "07": [2, 4], "avg": [2, 4], "popul": [2, 4], "AS": [2, 4], "gdp_per_capita": [2, 4], "value1": [2, 4], "1000000": [2, 4], "carbon_per_capita": [2, 4], "indic": [2, 4, 6], "annualindicatorentri": [2, 4], "hasind": [2, 4], "ny": [2, 4], "mktp": [2, 4], "cd": [2, 4, 6], "hascountri": [2, 4], "hasvalu": [2, 4], "identifi": [2, 4], "deu": [2, 4], "indicator1": [2, 4], "en": [2, 4], "atm": [2, 4], "co2e": [2, 4], "kt": [2, 4], "country1": [2, 4], "countrywiki": [2, 4], "p298": [2, 4], "p1082": [2, 4], "itemp": [2, 4], "p585": [2, 4], "click": 2, "enlarg": 2, "view": 2, "detail": 2, "cardin": [2, 4, 6], "0": [2, 4, 6, 7], "hour": 2, "timeout": 2, "76": 2, "318": 2, "second": [2, 4, 6], "18": 2, "35": 2, "445": 2, "9": 2, "816": 2, "slow": 2, "due": 2, "public": [2, 4], "unfortun": 2, "These": 2, "finish": 2, "sent": [2, 4], "fail": 2, "60": 2, "out": 2, "after": [2, 6], "long": 2, "mani": 2, "larg": [2, 5], "stage": 3, "other": [3, 4, 7], "through": 3, "focu": 3, "explain": [3, 4], "trustworthi": 3, "under": 3, "activ": 3, "develop": 3, "current": [3, 4, 6], "protocol": [3, 4], "you": [3, 4, 6], "specifi": [3, 4, 6], "manual": 3, "about": [3, 4, 6, 7], "been": 3, "yet": 3, "might": [3, 4], "exhaust": 3, "pleas": [3, 4], "let": 3, "u": 3, "know": [3, 7], "we": [3, 4, 7], "someth": [3, 4], "condit": 3, "g": 3, "IF": 3, "bound": 3, "coalesc": 3, "built": 3, "isiri": 3, "strlen": 3, "ab": 3, "floor": 3, "month": 3, "md5": 3, "dataset": [3, 7], "If": [4, 6], "want": [4, 6], "download": [4, 6], "python3": [4, 6], "manag": [4, 6], "": [4, 5, 6], "ply": [4, 6], "enabl": [4, 6], "rdflib": [4, 6], "your": [4, 6], "step": [4, 6], "git": [4, 6], "clone": [4, 6], "com": [4, 6, 7], "sdm": [4, 6], "tib": [4, 6], "m": [4, 5], "without": 4, "explicitli": 4, "repositori": [4, 6], "egg": 4, "easiest": [4, 6], "section": 4, "refer": [4, 7], "reader": [4, 7], "chapter": 4, "what": 4, "why": 4, "need": [4, 6, 7], "addition": [4, 6], "overview": 4, "offer": [4, 6], "decomposition_typ": 4, "star": [4, 6], "none": 4, "mtmanag": 4, "join_stars_loc": 4, "true": [4, 6], "print_result": 4, "yasq": 4, "fals": 4, "contain": [4, 6], "str": 4, "hold": 4, "shape": [4, 6], "eg": 4, "default": 4, "bool": 4, "15": 4, "No": 4, "longer": 4, "should": [4, 6], "attempt": 4, "load": [4, 6], "whether": 4, "mean": 4, "being": 4, "behavior": 4, "actual": 4, "like": 4, "wa": [4, 6], "workaround": 4, "valid": 4, "omit": 4, "A": [4, 5, 6], "addit": 4, "It": 4, "messag": 4, "field": 4, "went": 4, "dict": 4, "exampl": [4, 6, 7], "call": [4, 6, 7], "assum": [4, 6], "person": [4, 7], "rq": 4, "get_config": 4, "config_input": 4, "input": [4, 6], "either": 4, "later": 4, "main": 4, "usag": 4, "read": 4, "store": 4, "reus": 4, "repres": 4, "so": 4, "did": 4, "rdftm": 4, "see": [4, 7], "gain": 4, "hand": 4, "experi": 4, "coupl": 4, "particular": 4, "relat": [4, 5, 7], "kg": 4, "4": [4, 5], "below": [4, 7], "make": [4, 6], "sure": 4, "lab": 4, "eu": [4, 6], "covid19kg": 4, "dbpedia": 4, "excret": 4, "rate": 4, "metabol": 4, "administr": 4, "treatment": [4, 5, 6], "treat": 4, "dbp": 4, "properti": [4, 7], "k4covid": [4, 6], "research": [4, 5, 6], "vocab": [4, 6], "entiti": [4, 6], "distinct": [4, 6], "sameascoviddrug": 4, "hascoviddrug": [4, 6], "coviddrug": [4, 6], "hascomorbid": 4, "hascomorbiditydrug": 4, "comorbiditydrug": 4, "hascuiannot": 4, "cuicomorbiditydrug": 4, "samea": 4, "sameascomorbiditydrug": 4, "cuicoviddrug": 4, "routesofadministr": 4, "raw": 4, "githubusercont": 4, "master": 4, "print": 4, "chembl": 4, "iddrug": 4, "activeingredi": 4, "mass": 4, "p592": 4, "p3780": 4, "p2067": 4, "kegg": 4, "smile": 4, "notat": 4, "trade": 4, "dbo": 4, "ontologi": 4, "dbdrugbank": 4, "dbsmile": 4, "tradenam": 4, "dbcheml": 4, "dbkegg": 4, "drugbank": 4, "diseas": 4, "label": 4, "icd": 4, "mesh": 4, "risk": 4, "sameascomorbid": 4, "icd10": 4, "annotationcomorbid": 4, "meshid": 4, "union": 4, "worldbank_endpoint": 4, "report": 4, "2000": 4, "01": 4, "schema": 4, "country_cod": 4, "country_nam": 4, "year_exp_wb": 4, "exp_wb": 4, "year_exp": 4, "exp_wiki": 4, "sameascountri": 4, "hasannualindicatorentri": 4, "annualind": 4, "sp": 4, "dyn": 4, "le00": 4, "IN": 4, "p2250": 4, "itemlifeexpect": 4, "suppli": 4, "locat": 4, "won": 4, "t": [4, 6], "jsonconfig": 4, "between": 4, "thu": 4, "suit": 4, "purpos": 4, "remaind": 4, "comput": 4, "snippet": 4, "two": 4, "url_to_endpoint_1": 4, "url_to_endpoint_2": 4, "port": 4, "altern": 4, "pass": 4, "structur": 4, "help": 4, "prior": 4, "write": 4, "savetofil": 4, "new_mt": 4, "start": [4, 6], "6": 4, "handl": 4, "well": [4, 7], "token": 4, "server": [4, 6], "access_token": 4, "lifespan": 4, "expires_in": 4, "slightli": 4, "compar": 4, "keycloak": 4, "url_to_token_serv": 4, "usernam": [4, 7], "your_usernam": 4, "password": [4, 7], "your_password": 4, "kei": [4, 6], "itself": 4, "pair": 4, "credenti": 4, "simpli": [4, 6], "necessari": 4, "consider": 4, "increas": 4, "Of": 4, "cours": 4, "feasibl": 4, "file1": 4, "file2": 4, "7": 4, "full": 4, "classa": 4, "classb": 4, "kemel": 5, "endri": [5, 7], "mikhail": 5, "galkin": 5, "ioanna": 5, "lytra": 5, "moham": 5, "nadjib": 5, "mami": 5, "maria": 5, "esther": 5, "vidal": 5, "s\u00f6ren": 5, "auer": 5, "bridg": 5, "transact": 5, "scale": 5, "center": 5, "xxxix": 5, "volum": 5, "11310": 5, "42": 5, "springer": 5, "berlin": 5, "heidelberg": 5, "11": 5, "2018": 5, "doi": 5, "1007": 5, "978": 5, "662": 5, "58415": 5, "6_1": 5, "andrea": 5, "schwart": 5, "peter": 5, "haas": 5, "katja": 5, "hose": 5, "ralf": 5, "schenkel": 5, "michael": 5, "schmidt": 5, "fedx": 5, "optim": 5, "techniqu": 5, "link": 5, "semant": 5, "iswc": 5, "2011": 5, "601": 5, "616": 5, "642": 5, "25073": 5, "6_38": 5, "edna": 5, "ruckhau": 5, "toma": 5, "lampo": 5, "amad": 5, "\u0131": 5, "mart": 5, "nez": 5, "javier": 5, "sierra": 5, "axel": 5, "poller": 5, "applic": 5, "eswc": 5, "2010": 5, "228": 5, "242": 5, "13486": 5, "9_16": 5, "ahmad": 5, "sakor": 5, "samaneh": 5, "jozashoori": 5, "emeti": 5, "niazmand": 5, "ariam": 5, "riva": 5, "konstantino": 5, "bougiatioti": 5, "foti": 5, "aisopo": 5, "enriqu": 5, "iglesia": 5, "trupti": 5, "padiya": 5, "anastasia": 5, "krithara": 5, "georgio": 5, "palioura": 5, "knowledge4covid": 5, "19": [5, 6], "construct": 5, "covid": [5, 6], "variou": 5, "analyz": 5, "toxic": 5, "journal": 5, "1016": 5, "j": [5, 6], "websem": 5, "2022": 5, "100760": 5, "power": 6, "javascript": 6, "gunicorn": 6, "sdmtib": 6, "pypi": 6, "pull": 6, "latest": 6, "root": 6, "As": 6, "state": 6, "note": 6, "own": 6, "command": 6, "compos": 6, "f": 6, "yml": 6, "txt": 6, "put": 6, "line": 6, "exec": 6, "bash": 6, "c": 6, "restart": 6, "worker": 6, "take": 6, "effect": 6, "restart_work": 6, "sh": 6, "advanc": 6, "flag": 6, "localhost": 6, "5000": 6, "404": 6, "found": 6, "try": 6, "thank": 6, "post": 6, "favorit": 6, "browser": 6, "navig": 6, "your_domain": 6, "tld": 6, "enter": 6, "hit": 6, "button": 6, "doe": 6, "allow": 6, "number": 6, "curl": 6, "x": 6, "v0": 6, "12": 6, "execution_tim": 6, "07238245010375977": 6, "head": 6, "var": 6, "output_vers": 6, "__meta__": 6, "is_verifi": 6, "db00207": 6, "db00381": 6, "db00503": 6, "integ": 6, "float": 6, "give": 6, "ha": [6, 7], "spent": 6, "differenti": 6, "possibli": 6, "futur": 6, "verif": 6, "verifi": 6, "seen": 6, "than": 7, "decid": 7, "contribut": 7, "throughout": 7, "text": 7, "come": 7, "index": 7, "track": 7, "propos": 7, "et": 7, "al": 7, "fine": 7, "grain": 7, "connect": 7, "correspond": 7, "said": 7, "inher": 7, "record": 7, "domain": 7, "rang": 7, "For": 7, "formal": 7, "definit": 7, "foaf": 7, "roottyp": 7, "xmln": 7, "interest": 7, "linkedto": 7, "urlparam": 7, "example_us": 7, "1234": 7, "topic": 7}, "objects": {}, "objtypes": {}, "objnames": {}, "titleterms": {"changelog": 0, "v0": 0, "16": 0, "0": 0, "23": 0, "jul": 0, "2024": 0, "15": 0, "6": 0, "08": 0, "mai": 0, "5": 0, "07": 0, "4": 0, "12": 0, "apr": 0, "3": 0, "05": 0, "2": 0, "13": 0, "feb": 0, "1": 0, "01": 0, "dec": 0, "2023": 0, "14": 0, "28": 0, "nov": 0, "25": 0, "oct": 0, "29": 0, "jun": 0, "21": 0, "17": 0, "02": 0, "11": 0, "27": 0, "03": 0, "10": 0, "31": 0, "jan": 0, "9": 0, "06": 0, "2022": 0, "24": 0, "8": 0, "7": 0, "30": 0, "sep": 0, "19": [0, 4], "aug": 0, "26": 0, "22": 0, "20": 0, "2020": 0, "contributor": 1, "student": 1, "assist": 1, "alphabet": 1, "surnam": 1, "decomposit": 2, "type": 2, "tripl": 2, "wise": 2, "exclus": 2, "group": 2, "star": 2, "shape": 2, "sub": 2, "queri": [2, 4, 6], "combin": 2, "comparison": 2, "us": 2, "an": [2, 4], "exampl": 2, "detrusti": [3, 4, 6], "librari": 4, "instal": [4, 6], "requir": [4, 6], "local": [4, 6], "sourc": [4, 6, 7], "code": [4, 6], "github": 4, "pypi": 4, "execut": [4, 6], "knowledge4covid": 4, "q1": 4, "covid": 4, "drug": 4, "patient": 4, "asthma": 4, "q2": 4, "cardiopathi": 4, "q3": 4, "detail": 4, "inform": 4, "q4": 4, "comorbid": 4, "q5": 4, "coypu": 4, "life": 4, "expect": 4, "2017": 4, "gdp": 4, "co2": 4, "emiss": 4, "per": 4, "capita": 4, "germani": 4, "creat": [4, 6], "descript": [4, 6, 7], "standard": 4, "case": 4, "privat": 4, "endpoint": 4, "from": 4, "rml": 4, "map": 4, "restrict": 4, "class": 4, "refer": 5, "servic": 6, "dockerhub": 6, "set": 6, "up": 6, "updat": 6, "web": 6, "interfac": 6, "plot": 6, "plan": 6, "rest": 6, "api": 6, "version": 6}, "envversion": {"sphinx.domains.c": 2, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 8, "sphinx.domains.index": 1, "sphinx.domains.javascript": 2, "sphinx.domains.math": 2, "sphinx.domains.python": 3, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinxcontrib.bibtex": 9, "sphinx": 57}, "alltitles": {"Changelog": [[0, "changelog"]], "v0.16.0 - 23 Jul 2024": [[0, "v0-16-0-23-jul-2024"]], "v0.15.6 - 08 May 2024": [[0, "v0-15-6-08-may-2024"]], "v0.15.5 - 07 May 2024": [[0, "v0-15-5-07-may-2024"]], "v0.15.4 - 12 Apr 2024": [[0, "v0-15-4-12-apr-2024"]], "v0.15.3 - 05 Apr 2024": [[0, "v0-15-3-05-apr-2024"]], "v0.15.2 - 13 Feb 2024": [[0, "v0-15-2-13-feb-2024"]], "v0.15.1 - 07 Feb 2024": [[0, "v0-15-1-07-feb-2024"]], "v0.15.0 - 01 Dec 2023": [[0, "v0-15-0-01-dec-2023"]], "v0.14.0 - 28 Nov 2023": [[0, "v0-14-0-28-nov-2023"]], "v0.13.2 - 01 Nov 2023": [[0, "v0-13-2-01-nov-2023"]], "v0.13.1 - 25 Oct 2023": [[0, "v0-13-1-25-oct-2023"]], "v0.13.0 - 13 Oct 2023": [[0, "v0-13-0-13-oct-2023"]], "v0.12.3 - 29 Jun 2023": [[0, "v0-12-3-29-jun-2023"]], "v0.12.2 - 21 Jun 2023": [[0, "v0-12-2-21-jun-2023"]], "v0.12.1 - 17 May 2023": [[0, "v0-12-1-17-may-2023"]], "v0.12.0 - 02 May 2023": [[0, "v0-12-0-02-may-2023"]], "v0.11.3 - 27 Apr 2023": [[0, "v0-11-3-27-apr-2023"]], "v0.11.2 - 23 Feb 2023": [[0, "v0-11-2-23-feb-2023"]], "v0.11.1 - 14 Feb 2023": [[0, "v0-11-1-14-feb-2023"]], "v0.11.0 - 03 Feb 2023": [[0, "v0-11-0-03-feb-2023"]], "v0.10.0 - 31 Jan 2023": [[0, "v0-10-0-31-jan-2023"]], "v0.9.1 - 06 Dec 2022": [[0, "v0-9-1-06-dec-2022"]], "v0.9.0 - 24 Nov 2022": [[0, "v0-9-0-24-nov-2022"]], "v0.8.0 - 05 Nov 2022": [[0, "v0-8-0-05-nov-2022"]], "v0.7.2 - 30 Sep 2022": [[0, "v0-7-2-30-sep-2022"]], "v0.7.1 \u2013 19 Sep 2022": [[0, "v0-7-1-19-sep-2022"]], "v0.7.0 \u2013 17 Sep 2022": [[0, "v0-7-0-17-sep-2022"]], "v0.6.4 \u2013 16 Sep 2022": [[0, "v0-6-4-16-sep-2022"]], "v0.6.3 \u2013 05 Sep 2022": [[0, "v0-6-3-05-sep-2022"]], "v0.6.2 \u2013 31 Aug 2022": [[0, "v0-6-2-31-aug-2022"]], "v0.6.1 \u2013 16 Aug 2022": [[0, "v0-6-1-16-aug-2022"]], "v0.6.0 \u2013 13 Aug 2022": [[0, "v0-6-0-13-aug-2022"]], "v0.5.1 \u2013 27 Jul 2022": [[0, "v0-5-1-27-jul-2022"]], "v0.5.0 \u2013 26 Jul 2022": [[0, "v0-5-0-26-jul-2022"]], "v0.4.5 \u2013 30 Jun 2022": [[0, "v0-4-5-30-jun-2022"]], "v0.4.4 \u2013 14 Jun 2022": [[0, "v0-4-4-14-jun-2022"]], "v0.4.3 \u2013 22 May 2022": [[0, "v0-4-3-22-may-2022"]], "v0.4.2 \u2013 21 May 2022": [[0, "v0-4-2-21-may-2022"]], "v0.4.1 \u2013 20 May 2022": [[0, "v0-4-1-20-may-2022"]], "v0.4.0 \u2013 20 May 2022": [[0, "v0-4-0-20-may-2022"]], "v0.3.0 \u2013 19 May 2022": [[0, "v0-3-0-19-may-2022"]], "v0.2.0 \u2013 07 Feb 2022": [[0, "v0-2-0-07-feb-2022"]], "v0.1.0 \u2013 17 Dec 2020": [[0, "v0-1-0-17-dec-2020"]], "Contributors": [[1, "contributors"]], "Student Assistants (alphabetical by surname)": [[1, "student-assistants-alphabetical-by-surname"]], "Decomposition Types": [[2, "decomposition-types"]], "Triple-wise": [[2, "triple-wise"]], "Exclusive Groups": [[2, "exclusive-groups"]], "Star-shaped Sub-queries": [[2, "star-shaped-sub-queries"]], "Combined Star-shaped Sub-queries": [[2, "combined-star-shaped-sub-queries"]], "Comparison using an Example": [[2, "comparison-using-an-example"]], "DeTrusty": [[3, "detrusty"]], "DeTrusty as a Library": [[4, "detrusty-as-a-library"]], "Installation": [[4, "installation"], [6, "installation"]], "Requirements": [[4, "requirements"], [6, "requirements"]], "Local Source Code": [[4, "local-source-code"], [6, "local-source-code"]], "GitHub": [[4, "github"]], "PyPI": [[4, "pypi"]], "Executing Queries": [[4, "executing-queries"]], "Knowledge4COVID-19": [[4, "knowledge4covid-19"]], "Q1. COVID-19 Drugs for Patients with Asthma": [[4, "q1-covid-19-drugs-for-patients-with-asthma"]], "Q2. COVID-19 Drugs for Patients with a Cardiopathy": [[4, "q2-covid-19-drugs-for-patients-with-a-cardiopathy"]], "Q3. Detailed COVID-19 Drug Information for Patients with Asthma": [[4, "q3-detailed-covid-19-drug-information-for-patients-with-asthma"]], "Q4. COVID-19 Comorbidity Information": [[4, "q4-covid-19-comorbidity-information"]], "Q5. COVID-19 Comorbidity Drugs": [[4, "q5-covid-19-comorbidity-drugs"]], "CoyPu": [[4, "coypu"]], "Q1. Life Expectancy in 2017": [[4, "q1-life-expectancy-in-2017"]], "Q2. GDP and CO2 Emission per Capita in Germany": [[4, "q2-gdp-and-co2-emission-per-capita-in-germany"]], "Creating Source Descriptions": [[4, "id3"]], "Standard Case": [[4, "standard-case"]], "Private Endpoints": [[4, "private-endpoints"]], "Source Descriptions from RML Mappings": [[4, "source-descriptions-from-rml-mappings"]], "Restricting Classes of an Endpoint": [[4, "restricting-classes-of-an-endpoint"]], "References": [[5, "references"]], "DeTrusty as a Service": [[6, "detrusty-as-a-service"]], "DockerHub": [[6, "dockerhub"]], "Setting up DeTrusty": [[6, "setting-up-detrusty"]], "Creating/Updating Source Descriptions": [[6, "creating-updating-source-descriptions"]], "Web Interface": [[6, "web-interface"]], "Web Interface: Executing Queries": [[6, "web-interface-executing-queries"]], "Web Interface: Plotting Query Plans": [[6, "web-interface-plotting-query-plans"]], "RESTful API": [[6, "restful-api"]], "API: DeTrusty Version": [[6, "api-detrusty-version"]], "API: Executing Queries": [[6, "api-executing-queries"]], "Source Descriptions": [[7, "source-descriptions"]]}, "indexentries": {}}) \ No newline at end of file diff --git a/service.html b/service.html index 26be2ec..acd0e89 100644 --- a/service.html +++ b/service.html @@ -4,7 +4,7 @@ - DeTrusty as a Service — DeTrusty 0.15.6 documentation + DeTrusty as a Service — DeTrusty 0.16.0 documentation @@ -34,7 +34,7 @@
    - 0.15.6 + 0.16.0
    diff --git a/source_description.html b/source_description.html index 50a29af..b4eefc4 100644 --- a/source_description.html +++ b/source_description.html @@ -4,7 +4,7 @@ - Source Descriptions — DeTrusty 0.15.6 documentation + Source Descriptions — DeTrusty 0.16.0 documentation @@ -34,7 +34,7 @@
    - 0.15.6 + 0.16.0