Yeast Gates Strains Constant

[danbryce]

It seems the yeast gates strains have moved to https://hub.sd2e.org/user/sd2e/design/yeast_gates_strains/1. I was using this constant YEAST_GATES_DESIGN_COLLECTION = 'https://hub.sd2e.org/user/sd2e/design/yeast_gates/1'
, but there is no constant for this new location in synbiohub_adapter.

[danbryce]

PR at #40

[nroehner]

Hi Dan,

I've merged the pull request. By the way, the yeast gates strains are still in the yeast gates design collection, but they are now also in the sub-collection called yeast gates strains. We created this sub-collection to make it easier for us to download the yeast gates strains as we begin to curate metadata on their circuit interactions.

[danbryce]

Thanks. I think the original collection is missing some of the strains. I was having issues yesterday and found what I needed in the new collection.

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On Sep 25, 2018, at 12:34 PM, Nicholas Roehner ***@***.***> wrote: Hi Dan, I've merged the pull request. By the way, the yeast gates strains are still in the yeast gates design collection, but they are now also in the sub-collection called yeast gates strains. We created this sub-collection to make it easier for us to download the yeast gates strains as we begin to curate metadata on their circuit interactions. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.

[nroehner]

Hi Dan, do you remember which query you were using? I ran the query_design_set_gates method alternately with YEAST_GATES_DESIGN_COLLECTION and YEAST_GATES_STRAINS_COLLECTION as the collection argument and got the same results. Thanks!