Merge pull request #2149 from SCIInstitute/fix_cohort_gen #3925
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| name: Linux Build | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - release_v* | |
| tags: | |
| - '*' | |
| pull_request: | |
| env: | |
| # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.) | |
| BUILD_TYPE: Release | |
| SW_CLOUD_LOGIN: ${{ secrets.CLOUD_LOGIN }} | |
| CACHE_HOST: ${{ secrets.SSH_HOST }} | |
| GA_MEASUREMENT_ID: ${{ secrets.GA_MEASUREMENT_ID }} | |
| GA_API_SECRET: ${{ secrets.GA_API_SECRET }} | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| container: akenmorris/ubuntu-build-box-sw65 | |
| steps: | |
| - name: Install SSH Key | |
| uses: shimataro/ssh-key-action@v2 | |
| with: | |
| key: ${{ secrets.SSH_PRIVATE_KEY }} | |
| known_hosts: ${{ secrets.KNOWN_HOSTS }} | |
| - name: Conda info | |
| run: conda info | |
| - name: Check space1 | |
| run: df -h | |
| - name: Free some space | |
| run: cd /__t ; rm -rf CodeQL go | |
| - name: Check space2 | |
| run: df -h | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| lfs: true | |
| - name: Workaround for permission issue | |
| run: git config --global --add safe.directory /__w/ShapeWorks/ShapeWorks | |
| - name: Get tags | |
| run: git fetch --unshallow origin +refs/tags/*:refs/tags/* | |
| - name: Check space3 | |
| run: df -h | |
| - name: Restore Caches | |
| shell: bash -l {0} | |
| run: .github/workflows/restore_caches.sh | |
| - name: Conda Installs | |
| shell: bash -l {0} | |
| run: .github/workflows/gha_conda.sh | |
| - name: try import vtk | |
| shell: bash -l {0} | |
| run: conda activate shapeworks && python -c "import vtk" | |
| - name: Build Dependencies | |
| shell: bash -l {0} | |
| run: .github/workflows/gha_deps.sh | |
| - name: Check space4 | |
| run: df -h | |
| - name: cmake | |
| shell: bash -l {0} | |
| run: conda activate shapeworks && mkdir build && cd build && cmake -DCMAKE_CXX_FLAGS=-g -DITK_DIR=$HOME/install/lib/cmake/ITK-5.2 -DVTK_DIR=$HOME/install/lib/cmake/vtk-9.1 -DXLNT_DIR=$HOME/install -DLIBIGL_DIR=$HOME/install -DOpenVDB_DIR=$HOME/install/lib/cmake/OpenVDB -DGEOMETRYCENTRAL_DIR=$HOME/install -DCMAKE_BUILD_TYPE=$BUILD_TYPE -DBuild_Studio=ON -DJKQTCommonSharedLib_DIR=$HOME/install/lib/cmake/JKQTCommonSharedLib -DJKQTMathTextSharedLib_DIR=$HOME/install/lib/cmake/JKQTMathTextSharedLib -DJKQTPlotterSharedLib_DIR=$HOME/install/lib/cmake/JKQTPlotterSharedLib -DACVD_DIR=$HOME/install -DCMAKE_PREFIX_PATH=${CONDA_PREFIX} -DCMAKE_INSTALL_PREFIX=${GITHUB_WORKSPACE}/shapeworks-install -DUSE_ORIGIN_RPATH=ON -DGA_MEASUREMENT_ID=$GA_MEASUREMENT_ID -DGA_API_SECRET=$GA_API_SECRET .. | |
| - name: Check space5 | |
| run: df -h | |
| - name: make | |
| shell: bash -l {0} | |
| run: conda activate shapeworks && cd build && make -j4 | |
| - name: Check space6 | |
| run: df -h | |
| - name: Du | |
| run: cd / ; du -sh * || true | |
| - name: make install | |
| shell: bash -l {0} | |
| run: conda activate shapeworks && cd build && make install | |
| - name: Build Binary Package | |
| shell: bash -l {0} | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| run: conda activate shapeworks && source ./devenv.sh ./build/bin && PATH=$HOME:$PATH ./Support/package.sh tag ${GITHUB_WORKSPACE}/shapeworks-install $HOME/install | |
| - name: Download test data | |
| shell: bash -l {0} | |
| run: .github/workflows/download_test_data.sh | |
| - name: make test | |
| shell: bash -l {0} | |
| run: conda activate shapeworks && source ./devenv.sh ./build/bin && cd build && ctest -VV | |
| - name: Copy artifact | |
| shell: bash -l {0} | |
| run: cd /__w/ShapeWorks/ShapeWorks/artifacts && ${GITHUB_WORKSPACE}/.github/workflows/copy_artifact.sh artifact-${{github.sha}}-linux * | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: artifact-${{github.sha}}-linux | |
| path: ${{runner.workspace}}/ShapeWorks/artifacts | |
| - name: Deploy | |
| id: deploy | |
| if: github.ref == 'refs/heads/master' | |
| uses: marvinpinto/action-automatic-releases@latest | |
| with: | |
| repo_token: "${{ secrets.GITHUB_TOKEN }}" | |
| automatic_release_tag: "dev-linux" | |
| prerelease: true | |
| title: "Development Build for Linux" | |
| files: | | |
| ${{runner.workspace}}/ShapeWorks/artifacts/*.tar.gz | |
| - name: Store ccache | |
| shell: bash -l {0} | |
| run: .github/workflows/store_ccache.sh | |