From a294ef332a8e179aee5e8a9ec09210a56e90cc95 Mon Sep 17 00:00:00 2001 From: Mehmet Can Ay Date: Mon, 2 Sep 2024 16:35:14 +0200 Subject: [PATCH 1/3] add: citation --- CITATION.cff | 56 ++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 56 insertions(+) create mode 100644 CITATION.cff diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 0000000..2f4f4d9 --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,56 @@ +# This CITATION.cff file was generated with cffinit. +# Visit https://bit.ly/cffinit to generate yours today! + +cff-version: 1.2.0 +title: PDataViewer +message: >- + If you use this software, please cite it using the + metadata from this file. +type: software +authors: + - given-names: Mehmet Can + family-names: Ay + - given-names: Tim + family-names: Adams + - given-names: Yasamin + family-names: Salimi + - given-names: Marjan + family-names: Niazpoor + - given-names: Marc + family-names: Jacobs +identifiers: + - type: doi + value: 10.5281/zenodo.13629128 + description: Zenodo +repository-code: "https://github.com/SCAI-BIO/PDataViewer" +url: "https://pdata.k8s.bio.scai.fraunhofer.de/" +abstract: >- + A web application for Parkinson's disease cohort landscape + visualization. +keywords: + - Parkinson's disease + - Neurodegeneration + - Interoperability + - FAIR principles +license: Apache-2.0 +version: 0.0.8 +date-released: "2024-09-02" +preferred-citation: + title: On the Utility of Large Language Model Embeddings for Revolutionizing Semantic Data Harmonization in Alzheimer's and Parkinson's Disease + type: article + authors: + - given-names: Yasamin + family-names: Salimi + - given-names: Tim + family-names: Adams + - given-names: Mehmet Can + family-names: Ay + - given-names: Helena + family-names: Balabin + - given-names: Marc + family-names: Jacobs + - given-names: Martin + family-names: Hofmann-Apitius + doi: 10.21203/rs.3.rs-4108029/v1 + journal: Scientific Reports + year: 2024 From 15c11a49a86174438040f596a1114fc7d2c3829d Mon Sep 17 00:00:00 2001 From: Mehmet Can Ay Date: Mon, 2 Sep 2024 16:35:21 +0200 Subject: [PATCH 2/3] add: zenodo badge --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index a9700eb..94848a5 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ logo -![tests](https://github.com/SCAI-BIO/PDataViewer/actions/workflows/test.yml/badge.svg) ![version](https://img.shields.io/github/v/release/SCAI-BIO/PDataViewer) [![License](https://img.shields.io/badge/License-Apache_2.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) [![fair-software.eu](https://img.shields.io/badge/fair--software.eu-%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8B%20%20%E2%97%8B%20%20%E2%97%8B-orange)](https://fair-software.eu) +![tests](https://github.com/SCAI-BIO/PDataViewer/actions/workflows/test.yml/badge.svg) ![version](https://img.shields.io/github/v/release/SCAI-BIO/PDataViewer) [![License](https://img.shields.io/badge/License-Apache_2.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) [![DOI](https://zenodo.org/badge/785700235.svg)](https://zenodo.org/doi/10.5281/zenodo.13629127) [![fair-software.eu](https://img.shields.io/badge/fair--software.eu-%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8B%20%20%E2%97%8B%20%20%E2%97%8B-orange)](https://fair-software.eu) PDataViewer is a web application that lets you explore the PD data landscape and identify cohort datasets that suit your research needs. From dd18cbecb9181e2078865368e7e6dd8abd0dbdc4 Mon Sep 17 00:00:00 2001 From: Mehmet Can Ay Date: Mon, 2 Sep 2024 16:35:28 +0200 Subject: [PATCH 3/3] fix: python version --- backend/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/backend/Dockerfile b/backend/Dockerfile index 1601437..d1b3bfb 100644 --- a/backend/Dockerfile +++ b/backend/Dockerfile @@ -1,5 +1,5 @@ # Use an official Python runtime as a parent image -FROM python:3.12 +FROM python:3.11 # Set the working directory in the container WORKDIR /app