diff --git a/dependency-reduced-pom.xml b/dependency-reduced-pom.xml
index 85f03b5..f50b8b6 100644
--- a/dependency-reduced-pom.xml
+++ b/dependency-reduced-pom.xml
@@ -1,151 +1,151 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
-  <modelVersion>4.0.0</modelVersion>
-  <groupId>edu.stonybrook.bmi</groupId>
-  <artifactId>hatch</artifactId>
-  <version>4.0.0</version>
-  <build>
-    <resources>
-      <resource>
-        <directory>src/main/resources</directory>
-      </resource>
-      <resource>
-        <directory>src/main/java</directory>
-        <includes>
-          <include>**</include>
-        </includes>
-        <excludes>
-          <exclude>**/*.java</exclude>
-        </excludes>
-      </resource>
-    </resources>
-  </build>
-  <profiles>
-    <profile>
-      <id>hatchjar</id>
-      <build>
-        <finalName>hatch-${project.version}</finalName>
-        <plugins>
-          <plugin>
-            <artifactId>maven-enforcer-plugin</artifactId>
-            <version>3.4.1</version>
-            <executions>
-              <execution>
-                <id>enforce</id>
-                <goals>
-                  <goal>enforce</goal>
-                </goals>
-                <configuration>
-                  <rules>
-                    <banDuplicatePomDependencyVersions />
-                  </rules>
-                </configuration>
-              </execution>
-            </executions>
-          </plugin>
-          <plugin>
-            <artifactId>maven-shade-plugin</artifactId>
-            <version>3.5.2</version>
-            <executions>
-              <execution>
-                <phase>package</phase>
-                <goals>
-                  <goal>shade</goal>
-                </goals>
-              </execution>
-            </executions>
-            <configuration>
-              <shadedArtifactAttached>false</shadedArtifactAttached>
-              <transformers>
-                <transformer>
-                  <mainClass>edu.stonybrook.bmi.hatch.Hatch</mainClass>
-                  <manifestEntries>
-                    <Multi-Release>true</Multi-Release>
-                  </manifestEntries>
-                </transformer>
-                <transformer />
-              </transformers>
-              <filters>
-                <filter>
-                  <artifact>*:*</artifact>
-                  <excludes>
-                    <exclude>META-INF/*.SF</exclude>
-                    <exclude>META-INF/*.DSA</exclude>
-                    <exclude>META-INF/*.RSA</exclude>
-                  </excludes>
-                </filter>
-              </filters>
-            </configuration>
-          </plugin>
-        </plugins>
-      </build>
-    </profile>
-    <profile>
-      <id>hatch</id>
-      <build>
-        <plugins>
-          <plugin>
-            <groupId>org.graalvm.buildtools</groupId>
-            <artifactId>native-maven-plugin</artifactId>
-            <version>0.10.1</version>
-            <extensions>true</extensions>
-            <executions>
-              <execution>
-                <id>build-native</id>
-                <phase>package</phase>
-                <goals>
-                  <goal>compile-no-fork</goal>
-                </goals>
-              </execution>
-            </executions>
-            <configuration>
-              <imageName>hatch</imageName>
-              <mainClass>edu.stonybrook.bmi.hatch.Hatch</mainClass>
-              <debug>true</debug>
-              <skipNativeTests>true</skipNativeTests>
-              <verbose>true</verbose>
-              <buildArgs>
-                <buildArg>--no-fallback</buildArg>
-                <buildArg>-H:ConfigurationFileDirectories=config</buildArg>
-                <buildArg>--enable-url-protocols=https</buildArg>
-                <buildArg>-H:+AddAllCharsets</buildArg>
-              </buildArgs>
-            </configuration>
-          </plugin>
-        </plugins>
-      </build>
-    </profile>
-  </profiles>
-  <repositories>
-    <repository>
-      <id>central</id>
-      <name>Central Repository</name>
-      <url>https://repo.maven.apache.org/maven2</url>
-    </repository>
-    <repository>
-      <id>ome</id>
-      <name>OME Artifactory</name>
-      <url>https://artifacts.openmicroscopy.org/artifactory/maven/</url>
-    </repository>
-    <repository>
-      <id>halcyon</id>
-      <url>https://cursus.bmi.stonybrookmedicine.edu/releases</url>
-    </repository>
-  </repositories>
-  <dependencies>
-    <dependency>
-      <groupId>org.apache.jena</groupId>
-      <artifactId>apache-jena-libs</artifactId>
-      <version>5.0.0</version>
-      <type>pom</type>
-      <scope>compile</scope>
-    </dependency>
-  </dependencies>
-  <properties>
-    <maven.compiler.target>21</maven.compiler.target>
-    <twelvemonkeys.version>3.10.1</twelvemonkeys.version>
-    <maven.compiler.source>21</maven.compiler.source>
-    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-    <ver.bioformats>7.3.0</ver.bioformats>
-  </properties>
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
+  <modelVersion>4.0.0</modelVersion>
+  <groupId>edu.stonybrook.bmi</groupId>
+  <artifactId>hatch</artifactId>
+  <version>4.0.1</version>
+  <build>
+    <resources>
+      <resource>
+        <directory>src/main/resources</directory>
+      </resource>
+      <resource>
+        <directory>src/main/java</directory>
+        <includes>
+          <include>**</include>
+        </includes>
+        <excludes>
+          <exclude>**/*.java</exclude>
+        </excludes>
+      </resource>
+    </resources>
+  </build>
+  <profiles>
+    <profile>
+      <id>hatchjar</id>
+      <build>
+        <finalName>hatch-${project.version}</finalName>
+        <plugins>
+          <plugin>
+            <artifactId>maven-enforcer-plugin</artifactId>
+            <version>3.4.1</version>
+            <executions>
+              <execution>
+                <id>enforce</id>
+                <goals>
+                  <goal>enforce</goal>
+                </goals>
+                <configuration>
+                  <rules>
+                    <banDuplicatePomDependencyVersions />
+                  </rules>
+                </configuration>
+              </execution>
+            </executions>
+          </plugin>
+          <plugin>
+            <artifactId>maven-shade-plugin</artifactId>
+            <version>3.5.2</version>
+            <executions>
+              <execution>
+                <phase>package</phase>
+                <goals>
+                  <goal>shade</goal>
+                </goals>
+              </execution>
+            </executions>
+            <configuration>
+              <shadedArtifactAttached>false</shadedArtifactAttached>
+              <transformers>
+                <transformer>
+                  <mainClass>edu.stonybrook.bmi.hatch.Hatch</mainClass>
+                  <manifestEntries>
+                    <Multi-Release>true</Multi-Release>
+                  </manifestEntries>
+                </transformer>
+                <transformer />
+              </transformers>
+              <filters>
+                <filter>
+                  <artifact>*:*</artifact>
+                  <excludes>
+                    <exclude>META-INF/*.SF</exclude>
+                    <exclude>META-INF/*.DSA</exclude>
+                    <exclude>META-INF/*.RSA</exclude>
+                  </excludes>
+                </filter>
+              </filters>
+            </configuration>
+          </plugin>
+        </plugins>
+      </build>
+    </profile>
+    <profile>
+      <id>hatch</id>
+      <build>
+        <plugins>
+          <plugin>
+            <groupId>org.graalvm.buildtools</groupId>
+            <artifactId>native-maven-plugin</artifactId>
+            <version>0.10.1</version>
+            <extensions>true</extensions>
+            <executions>
+              <execution>
+                <id>build-native</id>
+                <phase>package</phase>
+                <goals>
+                  <goal>compile-no-fork</goal>
+                </goals>
+              </execution>
+            </executions>
+            <configuration>
+              <imageName>hatch</imageName>
+              <mainClass>edu.stonybrook.bmi.hatch.Hatch</mainClass>
+              <debug>true</debug>
+              <skipNativeTests>true</skipNativeTests>
+              <verbose>true</verbose>
+              <buildArgs>
+                <buildArg>--no-fallback</buildArg>
+                <buildArg>-H:ConfigurationFileDirectories=config</buildArg>
+                <buildArg>--enable-url-protocols=https</buildArg>
+                <buildArg>-H:+AddAllCharsets</buildArg>
+              </buildArgs>
+            </configuration>
+          </plugin>
+        </plugins>
+      </build>
+    </profile>
+  </profiles>
+  <repositories>
+    <repository>
+      <id>central</id>
+      <name>Central Repository</name>
+      <url>https://repo.maven.apache.org/maven2</url>
+    </repository>
+    <repository>
+      <id>ome</id>
+      <name>OME Artifactory</name>
+      <url>https://artifacts.openmicroscopy.org/artifactory/maven/</url>
+    </repository>
+    <repository>
+      <id>halcyon</id>
+      <url>https://cursus.bmi.stonybrookmedicine.edu/releases</url>
+    </repository>
+  </repositories>
+  <dependencies>
+    <dependency>
+      <groupId>org.apache.jena</groupId>
+      <artifactId>apache-jena-libs</artifactId>
+      <version>5.1.0</version>
+      <type>pom</type>
+      <scope>compile</scope>
+    </dependency>
+  </dependencies>
+  <properties>
+    <maven.compiler.target>21</maven.compiler.target>
+    <twelvemonkeys.version>3.10.1</twelvemonkeys.version>
+    <maven.compiler.source>21</maven.compiler.source>
+    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+    <ver.bioformats>7.3.1</ver.bioformats>
+  </properties>
+</project>
diff --git a/error.log b/error.log
index 7c4d7ba..e69de29 100644
--- a/error.log
+++ b/error.log
@@ -1,2 +0,0 @@
-2024-05-15 12:34:25 SEVERE edu.stonybrook.bmi.hatch.Validate.file: D:\bad\dest\Image_01_M200_40X_A36.tif ==> index >= numImages (0 >= 0) 
-2024-05-15 12:34:25 SEVERE edu.stonybrook.bmi.hatch.Validate.file: D:\bad\dest\ugh.tif ==> Invalid TIFF byte order mark 'sd', expected: 'II' or 'MM' 
diff --git a/nbactions-hatchjar.xml b/nbactions-hatchjar.xml
index 8c1adf6..8b84a2b 100644
--- a/nbactions-hatchjar.xml
+++ b/nbactions-hatchjar.xml
@@ -1,55 +1,55 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<actions>
-        <action>
-            <actionName>run</actionName>
-            <packagings>
-                <packaging>jar</packaging>
-            </packagings>
-            <goals>
-                <goal>process-classes</goal>
-                <goal>org.codehaus.mojo:exec-maven-plugin:3.0.0:exec</goal>
-            </goals>
-            <properties>
-                <exec.vmArgs></exec.vmArgs>
-                <exec.args>${exec.vmArgs} -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
-                <exec.appArgs>-v -src D:\bad\src -dest D:\bad\dest -validate</exec.appArgs>
-                <exec.mainClass>edu.stonybrook.bmi.hatch.Hatch</exec.mainClass>
-                <exec.executable>java</exec.executable>
-            </properties>
-        </action>
-        <action>
-            <actionName>debug</actionName>
-            <packagings>
-                <packaging>jar</packaging>
-            </packagings>
-            <goals>
-                <goal>process-classes</goal>
-                <goal>org.codehaus.mojo:exec-maven-plugin:3.0.0:exec</goal>
-            </goals>
-            <properties>
-                <exec.vmArgs>-agentlib:jdwp=transport=dt_socket,server=n,address=${jpda.address}</exec.vmArgs>
-                <exec.args>${exec.vmArgs} -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
-                <exec.appArgs>-v -src D:\bad\src -dest D:\bad\dest -validate</exec.appArgs>
-                <exec.mainClass>edu.stonybrook.bmi.hatch.Hatch</exec.mainClass>
-                <exec.executable>java</exec.executable>
-                <jpda.listen>true</jpda.listen>
-            </properties>
-        </action>
-        <action>
-            <actionName>profile</actionName>
-            <packagings>
-                <packaging>jar</packaging>
-            </packagings>
-            <goals>
-                <goal>process-classes</goal>
-                <goal>org.codehaus.mojo:exec-maven-plugin:3.0.0:exec</goal>
-            </goals>
-            <properties>
-                <exec.vmArgs></exec.vmArgs>
-                <exec.args>${exec.vmArgs} -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
-                <exec.mainClass>edu.stonybrook.bmi.hatch.Hatch</exec.mainClass>
-                <exec.executable>java</exec.executable>
-                <exec.appArgs>-v -src D:\bad\src -dest D:\bad\dest -validate</exec.appArgs>
-            </properties>
-        </action>
-    </actions>
+<?xml version="1.0" encoding="UTF-8"?>
+<actions>
+        <action>
+            <actionName>run</actionName>
+            <packagings>
+                <packaging>jar</packaging>
+            </packagings>
+            <goals>
+                <goal>process-classes</goal>
+                <goal>org.codehaus.mojo:exec-maven-plugin:3.0.0:exec</goal>
+            </goals>
+            <properties>
+                <exec.vmArgs></exec.vmArgs>
+                <exec.args>${exec.vmArgs} -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
+                <exec.appArgs>-v -src D:\miami\umiami_converted_image\image -dest D:\miami\umiami_converted_image\output2 -validate</exec.appArgs>
+                <exec.mainClass>edu.stonybrook.bmi.hatch.Hatch</exec.mainClass>
+                <exec.executable>java</exec.executable>
+            </properties>
+        </action>
+        <action>
+            <actionName>debug</actionName>
+            <packagings>
+                <packaging>jar</packaging>
+            </packagings>
+            <goals>
+                <goal>process-classes</goal>
+                <goal>org.codehaus.mojo:exec-maven-plugin:3.0.0:exec</goal>
+            </goals>
+            <properties>
+                <exec.vmArgs>-agentlib:jdwp=transport=dt_socket,server=n,address=${jpda.address}</exec.vmArgs>
+                <exec.args>${exec.vmArgs} -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
+                <exec.appArgs>-v -src D:\miami\umiami_converted_image\image -dest D:\miami\umiami_converted_image\output2 -validate</exec.appArgs>
+                <exec.mainClass>edu.stonybrook.bmi.hatch.Hatch</exec.mainClass>
+                <exec.executable>java</exec.executable>
+                <jpda.listen>true</jpda.listen>
+            </properties>
+        </action>
+        <action>
+            <actionName>profile</actionName>
+            <packagings>
+                <packaging>jar</packaging>
+            </packagings>
+            <goals>
+                <goal>process-classes</goal>
+                <goal>org.codehaus.mojo:exec-maven-plugin:3.0.0:exec</goal>
+            </goals>
+            <properties>
+                <exec.vmArgs></exec.vmArgs>
+                <exec.args>${exec.vmArgs} -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
+                <exec.mainClass>edu.stonybrook.bmi.hatch.Hatch</exec.mainClass>
+                <exec.executable>java</exec.executable>
+                <exec.appArgs>-v -src D:\miami\umiami_converted_image\image -dest D:\miami\umiami_converted_image\output2 -validate</exec.appArgs>
+            </properties>
+        </action>
+    </actions>
diff --git a/pom.xml b/pom.xml
index 4bce4ec..d8e1a21 100644
--- a/pom.xml
+++ b/pom.xml
@@ -3,13 +3,13 @@
 	<modelVersion>4.0.0</modelVersion>
 	<groupId>edu.stonybrook.bmi</groupId>
 	<artifactId>hatch</artifactId>
-	<version>4.0.0</version>
+	<version>4.0.1</version>
 	<packaging>jar</packaging>
 	<properties>
 		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
 		<maven.compiler.source>21</maven.compiler.source>
 		<maven.compiler.target>21</maven.compiler.target>
-		<ver.bioformats>7.3.0</ver.bioformats>
+		<ver.bioformats>7.3.1</ver.bioformats>
                 <twelvemonkeys.version>3.10.1</twelvemonkeys.version>
 	</properties>
 	<dependencies>
@@ -38,7 +38,7 @@
             <dependency>
                 <groupId>org.apache.jena</groupId>
                 <artifactId>apache-jena-libs</artifactId>
-                <version>5.0.0</version>
+                <version>5.1.0</version>
                 <type>pom</type>
             </dependency>
             <dependency>