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Have script for finding the top 80% most frequent individual labs from EPIC that are in EXM
Find the lab procedure/battery that for each of these labs that we have in EXM. e.g. map from red blood cell count, neutrophil count etc. to the grouping full blood count
many {bundle_id}.csv files (can use the procedure code from EPIC as the bundle_id), would be nice to have the OMOP concept human readable name in there as well
a single bundle_names.csv mapping (can use the human readable name for the lab procedure from EPIC as the bundle name). e.g. FBC -> Full blood count
copy these csv files to omop-bundles repo with these files. inst/data-raw/measurement
We know when we're done when we have the csv files in the omop-bundles, via pull request
The text was updated successfully, but these errors were encountered:
@anabarbararc@stefpiatek Going to close this as we've been using the data currently in the repo for a while now and it seems sufficient for now. Can always open a new issue when more work is needed.
We know when we're done when we have the csv files in the omop-bundles, via pull request
The text was updated successfully, but these errors were encountered: