Moved tests folder out of src (#261)

* Moved tests folder out of src * run-tests points at correct folder --------- Co-authored-by: ruaridhg <[email protected]>
SAFEHR-data · Jan 29, 2024 · 23b0917 · 23b0917
1 parent fc2ea7c
commit 23b0917
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Showing 6 changed files with 4 additions and 4 deletions.
diff --git a/pixl_dcmd/bin/run-tests.sh b/pixl_dcmd/bin/run-tests.sh
@@ -18,4 +18,4 @@ BIN_DIR=$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)
 PACKAGE_DIR="${BIN_DIR%/*}"
 cd "$PACKAGE_DIR"
 
-pytest src/pixl_dcmd/tests
+pytest tests
diff --git a/pixl_dcmd/src/pixl_dcmd/tests/__init__.py → pixl_dcmd/tests/__init__.py b/pixl_dcmd/src/pixl_dcmd/tests/__init__.py → pixl_dcmd/tests/__init__.py
diff --git a/pixl_dcmd/src/pixl_dcmd/tests/conftest.py → pixl_dcmd/tests/conftest.py b/pixl_dcmd/src/pixl_dcmd/tests/conftest.py → pixl_dcmd/tests/conftest.py
diff --git a/...dcmd/src/pixl_dcmd/tests/test_datetime.py → pixl_dcmd/tests/test_datetime.py b/...dcmd/src/pixl_dcmd/tests/test_datetime.py → pixl_dcmd/tests/test_datetime.py
diff --git a/.../src/pixl_dcmd/tests/test_deid_helpers.py → pixl_dcmd/tests/test_deid_helpers.py b/.../src/pixl_dcmd/tests/test_deid_helpers.py → pixl_dcmd/tests/test_deid_helpers.py
diff --git a/pixl_dcmd/src/pixl_dcmd/tests/test_main.py → pixl_dcmd/tests/test_main.py b/pixl_dcmd/src/pixl_dcmd/tests/test_main.py → pixl_dcmd/tests/test_main.py
@@ -32,7 +32,7 @@
 def tag_scheme() -> dict:
     """Read the tag scheme from orthanc raw."""
     tag_file = (
-        pathlib.Path(__file__).parents[4]
+        pathlib.Path(__file__).parents[2]
         / "orthanc/orthanc-anon/plugin/tag-operations.yaml"
     )
     return yaml.safe_load(tag_file.read_text())
@@ -57,7 +57,7 @@ def test_image_already_exported_throws(rows_in_session, tag_scheme):
     WHEN the dicom tag scheme is applied
     THEN an exception will be thrown as
     """
-    exported_dicom = pathlib.Path(__file__).parents[4] / "test/resources/Dicom1.dcm"
+    exported_dicom = pathlib.Path(__file__).parents[2] / "test/resources/Dicom1.dcm"
     input_dataset = pydicom.dcmread(exported_dicom)
 
     with pytest.raises(sqlalchemy.exc.NoResultFound):
@@ -71,7 +71,7 @@ def test_pseudo_identifier_processing(rows_in_session, tag_scheme):
     THEN the patient identifier tag should be the mrn and accession hashed
       and the pipeline db row should now have the fake hash
     """
-    exported_dicom = pathlib.Path(__file__).parents[4] / "test/resources/Dicom2.dcm"
+    exported_dicom = pathlib.Path(__file__).parents[2] / "test/resources/Dicom2.dcm"
     input_dataset = pydicom.dcmread(exported_dicom)
 
     accession_number = "AA12345605"