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Ways to determine regions #3

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davmlaw opened this issue Nov 17, 2021 · 0 comments

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davmlaw commented Nov 17, 2021

When there is eg both "antisense" and "snoRNA" at a locus, how do we want to count them?

4 ways:

alphabetically sorted and joined
Count all of them (adds up to more than 100%)
Probabalistically - ie fractionally count (ie .5 if 2)
Count the "most important" (ie in an order)

These should be command line options in bam-biotype

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