Merge pull request #291 from Remi-Gau/pre-commit-ci-update-config #385

	name: Test and coverage

	# This workflow will install Python dependencies, run tests
	# and lint with a variety of Python versions

	# TODO
	# - make sure the tests run online

	# For more information see:
	# https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	on: [push, pull_request]

	jobs:

	build:

	runs-on: ubuntu-latest

	steps:

	- name: Clone repo
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.11

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip setuptools
	pip install -r python/requirements.txt
	cd python && pip install -e . && cd ..
	mkdir -p lib && git clone https://github.com/Remi-Gau/reproschema-py.git lib/reproschema-py
	cd lib/reproschema-py && git checkout remi_schema_creator && pip install -e .

	- name: Run tests and generate coverage report
	run: python -m pytest python/tests --cov=./ --cov-report=xml

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	file: ./coverage.xml
	flags: unittests
	name: codecov-umbrella
	fail_ci_if_error: true
	verbose: true

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