diff --git a/.github/workflows/build-images.yaml b/.github/workflows/build-images.yaml
index 5ab2de7..dd18f4e 100644
--- a/.github/workflows/build-images.yaml
+++ b/.github/workflows/build-images.yaml
@@ -74,12 +74,12 @@ jobs:
         shell: bash
         run: |
           if [[ -z "${{ inputs.appsToBuild }}" ]]; then
-              matrices=$(python ./scripts/actions/prepare-matrices.py "all" "${{ inputs.pushImages }}" "${{ inputs.force }}")
+              matrices=$(python ./scripts/prepare-matrices.py "all" "${{ inputs.pushImages }}" "${{ inputs.force }}")
           else
               if [[ -z "${{ inputs.channelsToBuild }}" ]]; then
-                  matrices=$(python ./scripts/actions/prepare-matrices.py "${{ inputs.appsToBuild }}" "${{ inputs.pushImages }}" "${{ inputs.force }}")
+                  matrices=$(python ./scripts/prepare-matrices.py "${{ inputs.appsToBuild }}" "${{ inputs.pushImages }}" "${{ inputs.force }}")
               else
-                  matrices=$(python ./scripts/actions/prepare-matrices.py "${{ inputs.appsToBuild }}" "${{ inputs.pushImages }}" "${{ inputs.force }}" "${{ inputs.channelsToBuild }}")
+                  matrices=$(python ./scripts/prepare-matrices.py "${{ inputs.appsToBuild }}" "${{ inputs.pushImages }}" "${{ inputs.force }}" "${{ inputs.channelsToBuild }}")
               fi
           fi
           echo "matrices=${matrices}" >> $GITHUB_OUTPUT
diff --git a/.github/workflows/render-readme.yaml b/.github/workflows/render-readme.yaml
index 9ed0e2a..ce9a13d 100644
--- a/.github/workflows/render-readme.yaml
+++ b/.github/workflows/render-readme.yaml
@@ -43,7 +43,7 @@ jobs:
         env:
           GITHUB_TOKEN: "${{ steps.app-token.outputs.token }}"
         shell: bash
-        run: python ./scripts/actions/render-readme.py
+        run: python ./scripts/render-readme.py
 
       - name: Commit Changes
         shell: bash
diff --git a/apps/boltz/Dockerfile b/apps/boltz/Dockerfile
index 4b446a7..97366be 100644
--- a/apps/boltz/Dockerfile
+++ b/apps/boltz/Dockerfile
@@ -28,7 +28,6 @@ ENV \
 USER root
 WORKDIR /app
 
-# TODO: Add uv
 RUN \
   groupadd --gid ${GID} ${USERNAME} \
   && useradd --uid ${UID} --gid ${GID} --create-home --shell /bin/bash ${USERNAME} \
@@ -64,6 +63,7 @@ RUN \
   && rm -rf /root/.cache /var/lib/apt/lists/* /tmp/* /var/tmp/*
 
 COPY --chown=${UID}:${GID} ./apps/boltz/entrypoint.sh /entrypoint.sh
+RUN chmod -R 755 /entrypoint.sh
 
 USER ${USERNAME}
 WORKDIR /cache
@@ -72,4 +72,6 @@ VOLUME ["/cache"]
 WORKDIR /data
 VOLUME ["/data"]
 
+WORKDIR /app
+
 ENTRYPOINT ["/usr/bin/catatonit", "--", "/entrypoint.sh"]
diff --git a/apps/boltz/README.md b/apps/boltz/README.md
index 1d98c38..d3dc645 100644
--- a/apps/boltz/README.md
+++ b/apps/boltz/README.md
@@ -14,10 +14,9 @@ You can configure the docker image using the below environment variables
 
 | Environment Variable   | CLI Flag                 | Type                 | Default Value               | Description                                                         |
 | ---------------------- | ------------------------ | -------------------- | --------------------------- | ------------------------------------------------------------------- |
-| `SHELL`                | N/A                      | `FLAG`               | `False`                     | Start docker container as a shell                                   |
 | `USERNAME`             | N/A                      | `STR`                | `rare`                      | Username for the container                                          |
-| `UID`                  | N/A                      | `INTEGER`            | `900`                       | UID to use for the container                                        |
-| `GID`                  | N/A                      | `INTEGER`            | `900`                       | GID to use for the container                                        |
+| `UID`                  | N/A                      | `INTEGER`            | `900`                       | UID for the container                                               |
+| `GID`                  | N/A                      | `INTEGER`            | `900`                       | GID for the container                                               |
 | `DATA_PATH`            | `--out_dir`              | `PATH`               | `/data`                     | The path where predictions will be saved.                           |
 | `CACHE_PATH`           | `--cache`                | `PATH`               | `/cache`                    | The directory for downloading data and models.                      |
 | `DEVICE_TYPE`          | `--accelerator`          | `[gpu, cpu, tpu]`    | `gpu`                       | The type of accelerator to use for predictions.                     |
diff --git a/scripts/actions/prepare-matrices.py b/scripts/prepare-matrices.py
similarity index 100%
rename from scripts/actions/prepare-matrices.py
rename to scripts/prepare-matrices.py
diff --git a/scripts/actions/render-readme.py b/scripts/render-readme.py
similarity index 100%
rename from scripts/actions/render-readme.py
rename to scripts/render-readme.py
diff --git a/scripts/wip.sh b/scripts/wip.sh
index b254c83..ca444f0 100755
--- a/scripts/wip.sh
+++ b/scripts/wip.sh
@@ -23,7 +23,7 @@ function git_current_branch {
 function gwip {
   git add -A
   git rm $(git ls-files --deleted) 2> /dev/null
-  git commit --no-gpg-sign -m "--wip-- [skipci]"
+  git commit --no-gpg-sign -m "--wip--"
 }
 
 function gunwip {