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Conditionally independent (secondary) QTLs #11

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jackhump opened this issue Jun 10, 2020 · 1 comment

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jackhump commented Jun 10, 2020

tensorQTL has this option:

python3 -m tensorqtl ${plink_prefix_path} ${expression_bed} ${prefix} \
    --covariates ${covariates_file} \
    --cis_results ${cis_results_file} \
    --mode cis_independent

Plug it in, could be useful for COLOCing.

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jackhump commented Sep 14, 2020

Leaving for now as there's no way to pull out the distributions of conditional P-values right now.

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