From 5c42ce6020c3b653e33f72453487ac1fce8d9d67 Mon Sep 17 00:00:00 2001
From: Rose Orenbuch <rose.orenbuch@columbia.edu>
Date: Thu, 14 Mar 2019 22:03:46 +0000
Subject: [PATCH] Changed version number to comply with semantic versioning

---
 arcasHLA                   | 4 ++--
 scripts/arcas_utilities.py | 4 ++--
 scripts/extract.py         | 4 ++--
 scripts/genotype.py        | 4 ++--
 scripts/merge.py           | 3 +++
 scripts/partial.py         | 4 ++--
 scripts/reference.py       | 4 ++--
 7 files changed, 15 insertions(+), 12 deletions(-)

diff --git a/arcasHLA b/arcasHLA
index 758d2cc..8c2cd87 100755
--- a/arcasHLA
+++ b/arcasHLA
@@ -4,8 +4,8 @@
 #-----------------------------------------------------------------------------
 #
 #   Authors:    Rose Orenbuch, Ioan Filip, Itsik Pe'er
-#   Date:       November 2018
-#   Version:    1.0
+#   Date:       2018-12-11
+#   Version:    0.0
 #   License:    GNU
 #
 #-----------------------------------------------------------------------------
diff --git a/scripts/arcas_utilities.py b/scripts/arcas_utilities.py
index 656b038..f59f7b9 100644
--- a/scripts/arcas_utilities.py
+++ b/scripts/arcas_utilities.py
@@ -27,8 +27,8 @@
 import logging as log
 from subprocess import PIPE, run
 
-__version__     = '1.0'
-__date__        = 'November 2018'
+__version__     = '0.0'
+__date__        = '2018-12-11'
 
 #-------------------------------------------------------------------------------
 
diff --git a/scripts/extract.py b/scripts/extract.py
index 1f07d57..46c30ae 100644
--- a/scripts/extract.py
+++ b/scripts/extract.py
@@ -35,8 +35,8 @@
 from arcas_utilities import (process_allele, check_path, 
                              remove_files, run_command, hline)
 
-__version__     = '1.0'
-__date__        = 'November 2018'
+__version__     = '0.0'
+__date__        = '2018-12-11'
 
 #-------------------------------------------------------------------------------
 #   Extract Reads
diff --git a/scripts/genotype.py b/scripts/genotype.py
index e64ee98..e0229d0 100644
--- a/scripts/genotype.py
+++ b/scripts/genotype.py
@@ -44,8 +44,8 @@
 from arcas_utilities import (process_allele, check_path, remove_files, 
                             run_command, get_gene, hline)
 
-__version__     = '1.0'
-__date__        = 'November 2018'
+__version__     = '0.0'
+__date__        = '2018-12-11'
 
 #-------------------------------------------------------------------------------
 #   Paths and filenames
diff --git a/scripts/merge.py b/scripts/merge.py
index b01c34f..c6a01b9 100644
--- a/scripts/merge.py
+++ b/scripts/merge.py
@@ -30,6 +30,9 @@
 
 from arcas_utilities import check_path
 
+__version__     = '0.0'
+__date__        = '2018-12-11'
+
 #-------------------------------------------------------------------------------
 
 def get_paths(indir):
diff --git a/scripts/partial.py b/scripts/partial.py
index b066557..87d504e 100644
--- a/scripts/partial.py
+++ b/scripts/partial.py
@@ -43,8 +43,8 @@
                              run_command, hline)
 from genotype import pseudoalign, expectation_maximization
 
-__version__     = '1.0'
-__date__        = 'November 2018'
+__version__     = '0.0'
+__date__        = '2018-12-11'
 
 #-------------------------------------------------------------------------------
 #   Paths and filenames
diff --git a/scripts/reference.py b/scripts/reference.py
index e6c389c..1a82815 100644
--- a/scripts/reference.py
+++ b/scripts/reference.py
@@ -44,8 +44,8 @@
 from arcas_utilities import (process_allele, run_command, get_gene, 
                              hline, check_path)
 
-__version__     = '1.0'
-__date__        = 'November 2018'
+__version__     = '0.0'
+__date__        = '2018-12-11'
 
 #-------------------------------------------------------------------------------
 #   Paths and filenames