From 611a43b6812136da298e9bd91e5d97340899de03 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 11 Nov 2024 19:03:27 -0500
Subject: [PATCH 01/22] Bump parsl[monitoring] from 2024.10.28 to 2024.11.4
 (#2528)

Bumps [parsl[monitoring]](https://github.com/Parsl/parsl) from
2024.10.28 to 2024.11.4.
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/Parsl/parsl/commit/6dd5845baff745ae012b6c681926e3ca20278033"><code>6dd5845</code></a>
Make monitoring radio send() signature consistent with radio.send (<a
href="https://redirect.github.com/Parsl/parsl/issues/3672">#3672</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/7fe576e0d15618521d9306151024e1d5f5d7f8fa"><code>7fe576e</code></a>
Remove unused monitoring radio source ID (<a
href="https://redirect.github.com/Parsl/parsl/issues/3670">#3670</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/4f20b3ee96d488eb9842a99a8b074811e0bf454c"><code>4f20b3e</code></a>
Add <code>shared_fs</code> and <code>staging_required</code> test
markers (<a
href="https://redirect.github.com/Parsl/parsl/issues/3669">#3669</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/05121111b07cf1a0e122f6d0471a1d5423e799dd"><code>0512111</code></a>
Remove bad cut/paste from PR <a
href="https://redirect.github.com/Parsl/parsl/issues/2439">#2439</a> (<a
href="https://redirect.github.com/Parsl/parsl/issues/3671">#3671</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/06b4f28017aeb1d166dfceba8237825139052b1a"><code>06b4f28</code></a>
Remove deprecated CobaltProvider (<a
href="https://redirect.github.com/Parsl/parsl/issues/3667">#3667</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/1e272349c78827432dea7a321bf6f2f779f6707e"><code>1e27234</code></a>
Test monitoring filesystem radio (<a
href="https://redirect.github.com/Parsl/parsl/issues/3665">#3665</a>)</li>
<li>See full diff in <a
href="https://github.com/Parsl/parsl/compare/2024.10.28...2024.11.04">compare
view</a></li>
</ul>
</details>
<br />


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---
 tests/requirements-parsl.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-parsl.txt b/tests/requirements-parsl.txt
index 3d62bc05e2..0065cd53da 100644
--- a/tests/requirements-parsl.txt
+++ b/tests/requirements-parsl.txt
@@ -1 +1 @@
-parsl[monitoring]==2024.10.28
+parsl[monitoring]==2024.11.4

From e5e7d7b54a5c700539a22a151ec356355a09abaf Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 11 Nov 2024 19:03:37 -0500
Subject: [PATCH 02/22] Bump dask[distributed] from 2024.10.0 to 2024.11.1
 (#2530)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps [dask[distributed]](https://github.com/dask/dask) from 2024.10.0
to 2024.11.1.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/dask/dask/releases">dask[distributed]'s
releases</a>.</em></p>
<blockquote>
<h2>2024.11.1</h2>
<h2>Changes</h2>
<ul>
<li>Ensure subgraphs release intermediate results <a
href="https://github.com/fjetter"><code>@​fjetter</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11510">#11510</a>)</li>
<li>Implement faster tokenize for np dtype <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11508">#11508</a>)</li>
<li>Add quantile to array compat doc <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11504">#11504</a>)</li>
</ul>
<p>See the <a
href="https://docs.dask.org/en/stable/changelog.html">Changelog</a> for
more information.</p>
<h2>2024.11.0</h2>
<h2>Changes</h2>
<ul>
<li>Add changelog for Dask release <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11502">#11502</a>)</li>
<li>Minor updates to optional dependencies table <a
href="https://github.com/jrbourbeau"><code>@​jrbourbeau</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11503">#11503</a>)</li>
<li>Add push for ffill like operations <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11501">#11501</a>)</li>
<li>Remove func packing for TaskSpec <a
href="https://github.com/fjetter"><code>@​fjetter</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11496">#11496</a>)</li>
<li>Make tokenization for vindex more efficient <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11493">#11493</a>)</li>
<li>Cut down runtime of einstein summation test <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11499">#11499</a>)</li>
<li>Improve test runtime for test_rot90 <a
href="https://github.com/fjetter"><code>@​fjetter</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11498">#11498</a>)</li>
<li>Disable low level optimization for TaskSpec in Bags <a
href="https://github.com/fjetter"><code>@​fjetter</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11495">#11495</a>)</li>
<li>Add automatic rechunking to sliding-window-view <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11479">#11479</a>)</li>
<li>Add <code>load_stored</code> kwarg to <code>dask.array.store</code>.
<a href="https://github.com/dcherian"><code>@​dcherian</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11465">#11465</a>)</li>
<li>Fix quantile error in two dimensions <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11489">#11489</a>)</li>
<li>Bump conda-incubator/setup-miniconda from 3.0.4 to 3.1.0 <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11490">#11490</a>)</li>
<li>Update map_blocks docstring <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11491">#11491</a>)</li>
<li>Fix einsum with empty arrays <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11488">#11488</a>)</li>
<li>Implement non gil-blocking quantile method <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11473">#11473</a>)</li>
<li>Use internal keyword for trimming in map_overlap to reduce graph
size <a href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11486">#11486</a>)</li>
<li>minor dask order refactor <a
href="https://github.com/fjetter"><code>@​fjetter</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11467">#11467</a>)</li>
<li>Remove empty tasks from map_overlap <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11483">#11483</a>)</li>
<li>Fixup auto chunks calculation if single chunk goes below 1 <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11485">#11485</a>)</li>
<li>Fix CI after pandas upstream changes <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11482">#11482</a>)</li>
<li>Make sure that block_id and block_info don't create extra tasks <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11484">#11484</a>)</li>
<li>Use repeat to build nearest boundary <a
href="https://github.com/j2bbayle"><code>@​j2bbayle</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/9666">#9666</a>)</li>
<li>Remove dead code from make_blockwise <a
href="https://github.com/fjetter"><code>@​fjetter</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11478">#11478</a>)</li>
<li>Patch auto-chunks calculation for rioxarray <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11480">#11480</a>)</li>
<li>Skip legacy test because of flaky warning <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11475">#11475</a>)</li>
<li>Unskip a few dask-expr tests <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11474">#11474</a>)</li>
<li>Keep chunk sizes consistent in einsum <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11464">#11464</a>)</li>
<li>Improve how normalize_chunks squashes together chunks when
&quot;auto&quot; is set <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11468">#11468</a>)</li>
<li>Fix resolve_aliases when multiple aliases are in graph <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11469">#11469</a>)</li>
<li>Avoid cyclic import in dask.array <a
href="https://github.com/hendrikmakait"><code>@​hendrikmakait</code></a>
(<a
href="https://redirect.github.com/dask/dask/issues/11472">#11472</a>)</li>
<li>Unskip daraframe test <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11471">#11471</a>)</li>
<li>Improve dask.order performance for large graphs <a
href="https://github.com/fjetter"><code>@​fjetter</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11466">#11466</a>)</li>
<li>Ensure that <code>slice(None)</code> just maps the keys <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11450">#11450</a>)</li>
<li>Fix <code>Task.__repr__()</code> of unpickled object <a
href="https://github.com/pentschev"><code>@​pentschev</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11463">#11463</a>)</li>
<li>Use TaskSpec in local dask execution <a
href="https://github.com/fjetter"><code>@​fjetter</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11378">#11378</a>)</li>
<li>Adjust accuracy in test_solve_triangular_vector <a
href="https://github.com/fjetter"><code>@​fjetter</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11461">#11461</a>)</li>
<li>Update Aggregation docstring to better reflext the input argument of
… <a
href="https://github.com/guillaumeeb"><code>@​guillaumeeb</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11459">#11459</a>)</li>
<li>Implement fuse option for delayed objects <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11441">#11441</a>)</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/dask/dask/commit/d2daa380bbf77dd47a78e2b5a3fdd8fe5309763a"><code>d2daa38</code></a>
Version 2024.11.1</li>
<li><a
href="https://github.com/dask/dask/commit/5da4a7b94aa3aaf61afe513ddadf38762f5e7907"><code>5da4a7b</code></a>
Ensure subgraphs release intermediate results (<a
href="https://redirect.github.com/dask/dask/issues/11510">#11510</a>)</li>
<li><a
href="https://github.com/dask/dask/commit/583a7e2b9d661066f79f11e10140af95632f5908"><code>583a7e2</code></a>
Implement faster tokenize for np dtype (<a
href="https://redirect.github.com/dask/dask/issues/11508">#11508</a>)</li>
<li><a
href="https://github.com/dask/dask/commit/f802292755cbcdb70ecbad6e11f665b2ca813ae2"><code>f802292</code></a>
Add quantile to array compat doc (<a
href="https://redirect.github.com/dask/dask/issues/11504">#11504</a>)</li>
<li><a
href="https://github.com/dask/dask/commit/e8c15baeb23178f31f2426512786c15948163ec4"><code>e8c15ba</code></a>
Version 2024.11.0</li>
<li><a
href="https://github.com/dask/dask/commit/5cf7ee73640e0e1416762adb1824a0c30cdf3bab"><code>5cf7ee7</code></a>
Add changelog for Dask release (<a
href="https://redirect.github.com/dask/dask/issues/11502">#11502</a>)</li>
<li><a
href="https://github.com/dask/dask/commit/28a7e36b892ead554b317a96ddc85c1c6e613588"><code>28a7e36</code></a>
Minor updates to optional dependencies table (<a
href="https://redirect.github.com/dask/dask/issues/11503">#11503</a>)</li>
<li><a
href="https://github.com/dask/dask/commit/e357ff13e2222aa106e98441d563a999143afc99"><code>e357ff1</code></a>
Add push for ffill like operations (<a
href="https://redirect.github.com/dask/dask/issues/11501">#11501</a>)</li>
<li><a
href="https://github.com/dask/dask/commit/c912dc3152b9764612b5dcce2be85305c521ef32"><code>c912dc3</code></a>
Remove func packing for TaskSpec (<a
href="https://redirect.github.com/dask/dask/issues/11496">#11496</a>)</li>
<li><a
href="https://github.com/dask/dask/commit/bad6b68f26f61dd1a42ca49dbea8a032abf23e87"><code>bad6b68</code></a>
Make tokenization for vindex more efficient (<a
href="https://redirect.github.com/dask/dask/issues/11493">#11493</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/dask/dask/compare/2024.10.0...2024.11.1">compare
view</a></li>
</ul>
</details>
<br />


[![Dependabot compatibility
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Dependabot will resolve any conflicts with this PR as long as you don't
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You can trigger Dependabot actions by commenting on this PR:
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---
 tests/requirements-dask.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-dask.txt b/tests/requirements-dask.txt
index 6257575ea7..4f4bd7f129 100644
--- a/tests/requirements-dask.txt
+++ b/tests/requirements-dask.txt
@@ -1,2 +1,2 @@
-dask[distributed]==2024.10.0
+dask[distributed]==2024.11.1
 dask-jobqueue==0.9.0

From 387a209556341ac074f2bdecc7f82b9a85a3f1ea Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 11 Nov 2024 19:03:43 -0500
Subject: [PATCH 03/22] Bump phonopy from 2.29.1 to 2.30.0 (#2532)

Bumps [phonopy](https://github.com/phonopy/phonopy) from 2.29.1 to
2.30.0.
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/phonopy/phonopy/blob/develop/doc/changelog.md">phonopy's
changelog</a>.</em></p>
<blockquote>
<h2>Nov-9-2024: Version 2.30.0</h2>
<ul>
<li>The symfc package (<a
href="https://github.com/symfc/symfc">https://github.com/symfc/symfc</a>)
was made a necessary
package from this version.</li>
<li>Default force constants calculator for <code>phonopy-load</code>
command was changed to
<code>symfc</code>. The previous behaviour is recovered by
<code>phonopy-load --fc-calculator traditional</code>.</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/phonopy/phonopy/commit/e6757a1718bf719fdb978af3e23be2ab2e2662ca"><code>e6757a1</code></a>
Merge branch 'develop'</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/bd79d904895c176d8fada5e93cc5a0fdb5700219"><code>bd79d90</code></a>
Merge pull request <a
href="https://redirect.github.com/phonopy/phonopy/issues/447">#447</a>
from phonopy/release</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/f8c2832d17eb75e057c5ada16cdc4c44c2e73c0d"><code>f8c2832</code></a>
Set version 2.30.0</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/c55106b83a3ea882c48a488d1ed08bbfd0022ace"><code>c55106b</code></a>
Merge pull request <a
href="https://redirect.github.com/phonopy/phonopy/issues/446">#446</a>
from phonopy/phonopy-load-symfc</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/35e0d81ee997597a57d3f5ec64d4533b0f7a705d"><code>35e0d81</code></a>
Add python 3.13 in CI</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/eecb5854c506de72d6ab7b13cee9d473d48abc0a"><code>eecb585</code></a>
Symfc as default when phonopy-load</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/ec3ca0eb438bbbdbd3dee5d3a84e7efa963d2190"><code>ec3ca0e</code></a>
Merge pull request <a
href="https://redirect.github.com/phonopy/phonopy/issues/445">#445</a>
from phonopy/pre-commit-ci-update-config</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/4aac706edd0ce5282c7fcb870cca86879ffce54a"><code>4aac706</code></a>
[pre-commit.ci] pre-commit autoupdate</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/ebd51cf5aaa8b8bd4755ea547a54b6cc1be573f5"><code>ebd51cf</code></a>
Merge pull request <a
href="https://redirect.github.com/phonopy/phonopy/issues/443">#443</a>
from phonopy/pre-commit-ci-update-config</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/c6c10f7556a83e91df514d58f154795363029c17"><code>c6c10f7</code></a>
[pre-commit.ci] pre-commit autoupdate</li>
<li>See full diff in <a
href="https://github.com/phonopy/phonopy/compare/v2.29.1...v2.30.0">compare
view</a></li>
</ul>
</details>
<br />


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score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=phonopy&package-manager=pip&previous-version=2.29.1&new-version=2.30.0)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores)

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---
 tests/requirements-phonons.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-phonons.txt b/tests/requirements-phonons.txt
index db15c092de..037797dd51 100644
--- a/tests/requirements-phonons.txt
+++ b/tests/requirements-phonons.txt
@@ -1,2 +1,2 @@
-phonopy==2.29.1
+phonopy==2.30.0
 seekpath==2.1.0

From 48773d526c6f1631e445d99345e47eccc377c849 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Wed, 13 Nov 2024 13:58:31 -0500
Subject: [PATCH 04/22] Bump prefect[dask] from 3.1.0 to 3.1.1 (#2529)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps [prefect[dask]](https://github.com/PrefectHQ/prefect) from 3.1.0
to 3.1.1.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/PrefectHQ/prefect/releases">prefect[dask]'s
releases</a>.</em></p>
<blockquote>
<h2>3.1.1: Around the Codebase in 80 PRs</h2>
<h3>Enhancements ➕➕</h3>
<ul>
<li>Hook <code>prefect-kubernetes</code> into setting framework by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15888">PrefectHQ/prefect#15888</a></li>
<li>Enable PREFECT_PROFILES_PATH in source files by <a
href="https://github.com/GalLadislav"><code>@​GalLadislav</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15914">PrefectHQ/prefect#15914</a></li>
<li>Include worker ID with worker-originated flow run logs by <a
href="https://github.com/abrookins"><code>@​abrookins</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15941">PrefectHQ/prefect#15941</a></li>
</ul>
<h3>Bug Fixes 🐞</h3>
<ul>
<li>fix <code>wait_for</code> for <code>DaskTaskRunner</code> by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15909">PrefectHQ/prefect#15909</a></li>
<li>fix extra loggers parsing by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15913">PrefectHQ/prefect#15913</a></li>
<li>Fix <code>prefect config view</code> not showing .env file settings
by <a
href="https://github.com/GalLadislav"><code>@​GalLadislav</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15922">PrefectHQ/prefect#15922</a></li>
<li>fix sqlite migration by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15917">PrefectHQ/prefect#15917</a></li>
<li>fix flow run graph endpoint for nested task runs by <a
href="https://github.com/jakekaplan"><code>@​jakekaplan</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15939">PrefectHQ/prefect#15939</a></li>
</ul>
<h3>Integrations &amp; Dependencies 🤝</h3>
<ul>
<li>Update typer requirement from !=0.12.2,<!-- raw HTML omitted
-->=0.12.0,!=0.12.2,&lt;0.14.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15949">PrefectHQ/prefect#15949</a></li>
<li>Setup OpenTelemetry exporters when initializing prefect by <a
href="https://github.com/bunchesofdonald"><code>@​bunchesofdonald</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15946">PrefectHQ/prefect#15946</a></li>
</ul>
<h3>Development &amp; Tidiness 🧹</h3>
<ul>
<li>add internal <code>async_dispatch</code> util by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15813">PrefectHQ/prefect#15813</a></li>
<li>Update <code>@​prefecthq/prefect-ui-library</code> to version
3.11.14 by <a
href="https://github.com/marvin-robot"><code>@​marvin-robot</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15921">PrefectHQ/prefect#15921</a></li>
<li>Bump vue-tsc from 2.1.8 to 2.1.10 in /ui by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15916">PrefectHQ/prefect#15916</a></li>
<li>Begin replatform of UI to React by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15907">PrefectHQ/prefect#15907</a></li>
<li>Set <code>COVERAGE_CORE=sysmon</code> to speed up test on 3.12 by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15905">PrefectHQ/prefect#15905</a></li>
<li>Update docs for task results persistence param by <a
href="https://github.com/frances720"><code>@​frances720</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15931">PrefectHQ/prefect#15931</a></li>
<li>Add in WorkerAPILogger and related functionality by <a
href="https://github.com/sam-phinizy"><code>@​sam-phinizy</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15864">PrefectHQ/prefect#15864</a></li>
<li>Send worker metadata with first heartbeat by <a
href="https://github.com/abrookins"><code>@​abrookins</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15898">PrefectHQ/prefect#15898</a></li>
<li>Fix the direction of our integration string replacement by <a
href="https://github.com/abrookins"><code>@​abrookins</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15959">PrefectHQ/prefect#15959</a></li>
<li>Add in a link to the worker logs page by <a
href="https://github.com/sam-phinizy"><code>@​sam-phinizy</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15958">PrefectHQ/prefect#15958</a></li>
</ul>
<h2>New Contributors</h2>
<ul>
<li><a
href="https://github.com/frances720"><code>@​frances720</code></a> made
their first contribution in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15931">PrefectHQ/prefect#15931</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/PrefectHQ/prefect/compare/3.1.0...3.1.1">https://github.com/PrefectHQ/prefect/compare/3.1.0...3.1.1</a></p>
<h2>3.1.1.dev6: Nightly Development Release</h2>
<!-- raw HTML omitted -->
<h2>What's Changed</h2>
<h3>Enhancements ➕➕</h3>
<ul>
<li>Include worker ID with worker-originated flow run logs by <a
href="https://github.com/abrookins"><code>@​abrookins</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15941">PrefectHQ/prefect#15941</a></li>
</ul>
<h3>Bug Fixes 🐞</h3>
<ul>
<li>fix flow run graph endpoint for nested task runs by <a
href="https://github.com/jakekaplan"><code>@​jakekaplan</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15939">PrefectHQ/prefect#15939</a></li>
</ul>
<h3>Development &amp; Tidiness 🧹</h3>
<ul>
<li>Update <code>@​prefecthq/prefect-ui-library</code> to version
3.11.15 by <a
href="https://github.com/marvin-robot"><code>@​marvin-robot</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15947">PrefectHQ/prefect#15947</a></li>
</ul>
<h3>Uncategorized</h3>
<ul>
<li>Fix typo on self-host.mdx by <a
href="https://github.com/discdiver"><code>@​discdiver</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15936">PrefectHQ/prefect#15936</a></li>
<li>Add documentation on worker logs by <a
href="https://github.com/sam-phinizy"><code>@​sam-phinizy</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15920">PrefectHQ/prefect#15920</a></li>
<li>Fix some nits in the worker logging docs by <a
href="https://github.com/sam-phinizy"><code>@​sam-phinizy</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15948">PrefectHQ/prefect#15948</a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/6b50a2b9f9d4ebf59703c55e1156c6f79151f1c3"><code>6b50a2b</code></a>
Add in a link to the worker logs page (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15958">#15958</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/41d39063d3b548c97c53ba3c33de88acaf84a155"><code>41d3906</code></a>
Fix the direction of our integration string replacement (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15959">#15959</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/d6a4842caa5501049c0f8665f24e80c792398cdb"><code>d6a4842</code></a>
Setup OpenTelemetry exporters when initializing prefect (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15946">#15946</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/2624409ffcaa9a0f46ac0190a19fafe6954125d4"><code>2624409</code></a>
Update typer requirement from !=0.12.2,&lt;0.13.0,&gt;=0.12.0 to
&gt;=0.12.0,!=0.12.2,...</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/11ce49a934476cf845fe6cc935756e784b8000c9"><code>11ce49a</code></a>
Fix some nits in the worker logging docs (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15948">#15948</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/31568a61b33698a82362eef799cc7e2698acc506"><code>31568a6</code></a>
Update <code>@​prefecthq/prefect-ui-library</code> to version 3.11.15
(<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15947">#15947</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/a7d270b8dc99a901d0bc05f62bf8c1ff3e7cbeaf"><code>a7d270b</code></a>
Add documentation on worker logs (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15920">#15920</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/1c0dbaa8720696e7c9ebff9e04391557704b4821"><code>1c0dbaa</code></a>
Include worker ID with worker-originated flow run logs (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15941">#15941</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/6d357da4e5a06e4971699518b5dd771c067c68a4"><code>6d357da</code></a>
fix flow run graph endpoint for nested task runs (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15939">#15939</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/f184d0abe72e59078b1dca005daba78a0b42b931"><code>f184d0a</code></a>
Fix typo on self-host.mdx (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15936">#15936</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/PrefectHQ/prefect/compare/3.1.0...3.1.1">compare
view</a></li>
</ul>
</details>
<br />


[![Dependabot compatibility
score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=prefect[dask]&package-manager=pip&previous-version=3.1.0&new-version=3.1.1)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores)

Dependabot will resolve any conflicts with this PR as long as you don't
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You can trigger Dependabot actions by commenting on this PR:
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---
 tests/requirements-prefect.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-prefect.txt b/tests/requirements-prefect.txt
index 4c6612b720..2fe2c822a1 100644
--- a/tests/requirements-prefect.txt
+++ b/tests/requirements-prefect.txt
@@ -1,2 +1,2 @@
 dask-jobqueue==0.9.0
-prefect[dask]==3.1.0
+prefect[dask]==3.1.1

From 8e4b778770402872df987e9fbee1d5f0c72aab3b Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Wed, 13 Nov 2024 21:41:12 -0500
Subject: [PATCH 05/22] Bump typer from 0.12.5 to 0.13.0 (#2531)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps [typer](https://github.com/fastapi/typer) from 0.12.5 to 0.13.0.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/fastapi/typer/releases">typer's
releases</a>.</em></p>
<blockquote>
<h2>0.13.0</h2>
<h3>Features</h3>
<ul>
<li>✨ Handle <code>KeyboardInterrupt</code> separately from other
exceptions. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1039">#1039</a> by
<a
href="https://github.com/patrick91"><code>@​patrick91</code></a>.</li>
<li>✨ Update <code>launch</code> to not print anything when opening
urls. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1035">#1035</a> by
<a
href="https://github.com/patrick91"><code>@​patrick91</code></a>.</li>
<li>✨ Show help items in order of definition. PR <a
href="https://redirect.github.com/fastapi/typer/pull/944">#944</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
</ul>
<h3>Fixes</h3>
<ul>
<li>🐛 Fix equality check for custom classes. PR <a
href="https://redirect.github.com/fastapi/typer/pull/979">#979</a> by <a
href="https://github.com/AryazE"><code>@​AryazE</code></a>.</li>
<li>🐛 Allow colon in zsh autocomplete values and descriptions. PR <a
href="https://redirect.github.com/fastapi/typer/pull/988">#988</a> by <a
href="https://github.com/snapbug"><code>@​snapbug</code></a>.</li>
</ul>
<h3>Refactors</h3>
<ul>
<li>🗑️ Deprecate support for <code>is_flag</code> and
<code>flag_value</code> parameters. PR <a
href="https://redirect.github.com/fastapi/typer/pull/987">#987</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>🔥 Remove unused functionality from <code>_typing.py</code> file. PR
<a href="https://redirect.github.com/fastapi/typer/pull/805">#805</a> by
<a
href="https://github.com/ivantodorovich"><code>@​ivantodorovich</code></a>.</li>
<li>✏️ Fix typo in function name <code>_make_rich_text</code>. PR <a
href="https://redirect.github.com/fastapi/typer/pull/959">#959</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
</ul>
<h3>Internal</h3>
<ul>
<li>✅ Only run completion installation tests when the env var
<code>_TYPER_RUN_INSTALL_COMPLETION_TESTS</code> is set. PR <a
href="https://redirect.github.com/fastapi/typer/pull/995">#995</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>📝 Update the docstring of the <code>_make_rich_text</code> method.
PR <a href="https://redirect.github.com/fastapi/typer/pull/972">#972</a>
by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1040">#1040</a> by
<a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>⬆ Bump mkdocs-material from 9.5.42 to 9.5.44. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1042">#1042</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump ruff from 0.7.1 to 0.7.2. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1038">#1038</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump mkdocs-macros-plugin from 1.3.6 to 1.3.7. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1031">#1031</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1032">#1032</a> by
<a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>⬆ Bump ruff from 0.7.0 to 0.7.1. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1029">#1029</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump pillow from 10.4.0 to 11.0.0. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1023">#1023</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump mkdocs-material from 9.5.35 to 9.5.42. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1027">#1027</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump ruff from 0.6.5 to 0.7.0. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1026">#1026</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump mkdocs-macros-plugin from 1.2.0 to 1.3.6. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1025">#1025</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Update pre-commit requirement from <!-- raw HTML omitted
-->=2.17.0,&lt;5.0.0. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1012">#1012</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump pypa/gh-action-pypi-publish from 1.10.1 to 1.10.3. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1009">#1009</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1001">#1001</a> by
<a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>👷 Update Deploy docs CI to use uv. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1021">#1021</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>👷 Fix smokeshow, checkout files on CI. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1020">#1020</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>👷 Use uv in CI. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1019">#1019</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>👷 Update <code>labeler.yml</code>. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1014">#1014</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>👷 Update worfkow deploy-docs-notify URL. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1011">#1011</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>👷 Upgrade Cloudflare GitHub Action. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1010">#1010</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>⬆ Bump mkdocs-macros-plugin from 1.0.5 to 1.2.0. PR <a
href="https://redirect.github.com/fastapi/typer/pull/992">#992</a> by <a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump ruff from 0.6.4 to 0.6.5. PR <a
href="https://redirect.github.com/fastapi/typer/pull/991">#991</a> by <a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump mkdocs-material from 9.5.34 to 9.5.35. PR <a
href="https://redirect.github.com/fastapi/typer/pull/996">#996</a> by <a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/993">#993</a> by <a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/982">#982</a> by <a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>⬆ Bump tiangolo/issue-manager from 0.5.0 to 0.5.1. PR <a
href="https://redirect.github.com/fastapi/typer/pull/980">#980</a> by <a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>👷 Update <code>issue-manager.yml</code>. PR <a
href="https://redirect.github.com/fastapi/typer/pull/978">#978</a> by <a
href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>⬆ Bump ruff from 0.6.3 to 0.6.4. PR <a
href="https://redirect.github.com/fastapi/typer/pull/975">#975</a> by <a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump mkdocs-material from 9.5.33 to 9.5.34. PR <a
href="https://redirect.github.com/fastapi/typer/pull/963">#963</a> by <a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/fastapi/typer/blob/master/docs/release-notes.md">typer's
changelog</a>.</em></p>
<blockquote>
<h2>0.13.0</h2>
<h3>Features</h3>
<ul>
<li>✨ Handle <code>KeyboardInterrupt</code> separately from other
exceptions. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1039">#1039</a> by
<a
href="https://github.com/patrick91"><code>@​patrick91</code></a>.</li>
<li>✨ Update <code>launch</code> to not print anything when opening
urls. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1035">#1035</a> by
<a
href="https://github.com/patrick91"><code>@​patrick91</code></a>.</li>
<li>✨ Show help items in order of definition. PR <a
href="https://redirect.github.com/fastapi/typer/pull/944">#944</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
</ul>
<h3>Fixes</h3>
<ul>
<li>🐛 Fix equality check for custom classes. PR <a
href="https://redirect.github.com/fastapi/typer/pull/979">#979</a> by <a
href="https://github.com/AryazE"><code>@​AryazE</code></a>.</li>
<li>🐛 Allow colon in zsh autocomplete values and descriptions. PR <a
href="https://redirect.github.com/fastapi/typer/pull/988">#988</a> by <a
href="https://github.com/snapbug"><code>@​snapbug</code></a>.</li>
</ul>
<h3>Refactors</h3>
<ul>
<li>🗑️ Deprecate support for <code>is_flag</code> and
<code>flag_value</code> parameters. PR <a
href="https://redirect.github.com/fastapi/typer/pull/987">#987</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>🔥 Remove unused functionality from <code>_typing.py</code> file. PR
<a href="https://redirect.github.com/fastapi/typer/pull/805">#805</a> by
<a
href="https://github.com/ivantodorovich"><code>@​ivantodorovich</code></a>.</li>
<li>✏️ Fix typo in function name <code>_make_rich_text</code>. PR <a
href="https://redirect.github.com/fastapi/typer/pull/959">#959</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
</ul>
<h3>Internal</h3>
<ul>
<li>✅ Only run completion installation tests when the env var
<code>_TYPER_RUN_INSTALL_COMPLETION_TESTS</code> is set. PR <a
href="https://redirect.github.com/fastapi/typer/pull/995">#995</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>📝 Update the docstring of the <code>_make_rich_text</code> method.
PR <a href="https://redirect.github.com/fastapi/typer/pull/972">#972</a>
by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1040">#1040</a> by
<a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>⬆ Bump mkdocs-material from 9.5.42 to 9.5.44. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1042">#1042</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump ruff from 0.7.1 to 0.7.2. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1038">#1038</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump mkdocs-macros-plugin from 1.3.6 to 1.3.7. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1031">#1031</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1032">#1032</a> by
<a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>⬆ Bump ruff from 0.7.0 to 0.7.1. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1029">#1029</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump pillow from 10.4.0 to 11.0.0. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1023">#1023</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump mkdocs-material from 9.5.35 to 9.5.42. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1027">#1027</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump ruff from 0.6.5 to 0.7.0. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1026">#1026</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump mkdocs-macros-plugin from 1.2.0 to 1.3.6. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1025">#1025</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Update pre-commit requirement from <!-- raw HTML omitted
-->=2.17.0,&lt;5.0.0. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1012">#1012</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump pypa/gh-action-pypi-publish from 1.10.1 to 1.10.3. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1009">#1009</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1001">#1001</a> by
<a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>👷 Update Deploy docs CI to use uv. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1021">#1021</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>👷 Fix smokeshow, checkout files on CI. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1020">#1020</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>👷 Use uv in CI. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1019">#1019</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>👷 Update <code>labeler.yml</code>. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1014">#1014</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>👷 Update worfkow deploy-docs-notify URL. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1011">#1011</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>👷 Upgrade Cloudflare GitHub Action. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1010">#1010</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>⬆ Bump mkdocs-macros-plugin from 1.0.5 to 1.2.0. PR <a
href="https://redirect.github.com/fastapi/typer/pull/992">#992</a> by <a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump ruff from 0.6.4 to 0.6.5. PR <a
href="https://redirect.github.com/fastapi/typer/pull/991">#991</a> by <a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump mkdocs-material from 9.5.34 to 9.5.35. PR <a
href="https://redirect.github.com/fastapi/typer/pull/996">#996</a> by <a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/993">#993</a> by <a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/982">#982</a> by <a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>⬆ Bump tiangolo/issue-manager from 0.5.0 to 0.5.1. PR <a
href="https://redirect.github.com/fastapi/typer/pull/980">#980</a> by <a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>👷 Update <code>issue-manager.yml</code>. PR <a
href="https://redirect.github.com/fastapi/typer/pull/978">#978</a> by <a
href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
<li>⬆ Bump ruff from 0.6.3 to 0.6.4. PR <a
href="https://redirect.github.com/fastapi/typer/pull/975">#975</a> by <a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/fastapi/typer/commit/7bf84ab4bcbf0fc262fb076b7a41c648be0b545f"><code>7bf84ab</code></a>
🔖 Release version 0.13.0</li>
<li><a
href="https://github.com/fastapi/typer/commit/e80ba57e44ba0b4b2a22092d0c6e0d8fcbbacc53"><code>e80ba57</code></a>
📝 Update release notes</li>
<li><a
href="https://github.com/fastapi/typer/commit/c5233c0c18211fd9c8c90de202b124e6fcb96e67"><code>c5233c0</code></a>
✨ Handle <code>KeyboardInterrupt</code> separately from other exceptions
(<a
href="https://redirect.github.com/fastapi/typer/issues/1039">#1039</a>)</li>
<li><a
href="https://github.com/fastapi/typer/commit/e31fc5733aaf0d088dcaca55d773130e144a78e3"><code>e31fc57</code></a>
📝 Update release notes</li>
<li><a
href="https://github.com/fastapi/typer/commit/ee072d8ccf1c70166d162ca7873d1e6fa3ffa495"><code>ee072d8</code></a>
✨ Update <code>launch</code> to not print anything when opening urls (<a
href="https://redirect.github.com/fastapi/typer/issues/1035">#1035</a>)</li>
<li><a
href="https://github.com/fastapi/typer/commit/af49fda24d64759ef29400c4aab97fe3401cfb4a"><code>af49fda</code></a>
📝 Update release notes</li>
<li><a
href="https://github.com/fastapi/typer/commit/dc1bf3cff6b2f696f3904db355ade3d70aa6c009"><code>dc1bf3c</code></a>
🐛 Fix equality check for custom classes (<a
href="https://redirect.github.com/fastapi/typer/issues/979">#979</a>)</li>
<li><a
href="https://github.com/fastapi/typer/commit/bfb54c06a2822cda01eec0c03d6209035db6bbe3"><code>bfb54c0</code></a>
📝 Update release notes</li>
<li><a
href="https://github.com/fastapi/typer/commit/ebb968e4ca5d573be6cfc357f85e2e476bdbf9da"><code>ebb968e</code></a>
🐛 Allow colon in zsh autocomplete values and descriptions (<a
href="https://redirect.github.com/fastapi/typer/issues/988">#988</a>)</li>
<li><a
href="https://github.com/fastapi/typer/commit/438ae44e15d88e9fcf5d5c0364bf6dd91b647350"><code>438ae44</code></a>
📝 Update release notes</li>
<li>Additional commits viewable in <a
href="https://github.com/fastapi/typer/compare/0.12.5...0.13.0">compare
view</a></li>
</ul>
</details>
<br />


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You can trigger Dependabot actions by commenting on this PR:
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---
 tests/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements.txt b/tests/requirements.txt
index bd434fb1bb..e554d7269d 100644
--- a/tests/requirements.txt
+++ b/tests/requirements.txt
@@ -9,4 +9,4 @@ pydantic==2.9.2
 pydantic-settings==2.6.1
 pymatgen==2024.10.3
 ruamel.yaml==0.18.6
-typer==0.12.5
+typer==0.13.0

From 70be3d677115773c30c67efedd08ce3c5e770905 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 18 Nov 2024 20:27:16 -0500
Subject: [PATCH 06/22] Bump codecov/codecov-action from 4 to 5 (#2544)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps
[codecov/codecov-action](https://github.com/codecov/codecov-action) from
4 to 5.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/codecov/codecov-action/releases">codecov/codecov-action's
releases</a>.</em></p>
<blockquote>
<h2>v5.0.0</h2>
<h2>v5 Release</h2>
<p><code>v5</code> of the Codecov GitHub Action will use the <a
href="https://github.com/codecov/wrapper">Codecov Wrapper</a> to
encapsulate the <a
href="https://github.com/codecov/codecov-cli">CLI</a>. This will help
ensure that the Action gets updates quicker.</p>
<h3>Migration Guide</h3>
<p>The <code>v5</code> release also coincides with the opt-out feature
for tokens for public repositories. In the <code>Global Upload
Token</code> section of the settings page of an organization in
codecov.io, you can set the ability for Codecov to receive a coverage
reports from any source. This will allow contributors or other members
of a repository to upload without needing access to the Codecov token.
For more details see <a
href="https://docs.codecov.com/docs/codecov-tokens#uploading-without-a-token">how
to upload without a token</a>.</p>
<blockquote>
<p>[!WARNING]<br />
<strong>The following arguments have been changed</strong></p>
<ul>
<li><code>file</code> (this has been deprecated in favor of
<code>files</code>)</li>
<li><code>plugin</code> (this has been deprecated in favor of
<code>plugins</code>)</li>
</ul>
</blockquote>
<p>The following arguments have been added:</p>
<ul>
<li><code>binary</code></li>
<li><code>gcov_args</code></li>
<li><code>gcov_executable</code></li>
<li><code>gcov_ignore</code></li>
<li><code>gcov_include</code></li>
<li><code>report_type</code></li>
<li><code>skip_validation</code></li>
<li><code>swift_project</code></li>
</ul>
<p>You can see their usage in the <code>action.yml</code> <a
href="https://github.com/codecov/codecov-action/blob/main/action.yml">file</a>.</p>
<h2>What's Changed</h2>
<ul>
<li>chore(deps): bump to eslint9+ and remove eslint-config-google by <a
href="https://github.com/thomasrockhu-codecov"><code>@​thomasrockhu-codecov</code></a>
in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1591">codecov/codecov-action#1591</a></li>
<li>build(deps-dev): bump <code>@​octokit/webhooks-types</code> from
7.5.1 to 7.6.1 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1595">codecov/codecov-action#1595</a></li>
<li>build(deps-dev): bump typescript from 5.6.2 to 5.6.3 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1604">codecov/codecov-action#1604</a></li>
<li>build(deps-dev): bump <code>@​typescript-eslint/parser</code> from
8.8.0 to 8.8.1 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1601">codecov/codecov-action#1601</a></li>
<li>build(deps): bump <code>@​actions/core</code> from 1.11.0 to 1.11.1
by <a href="https://github.com/dependabot"><code>@​dependabot</code></a>
in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1597">codecov/codecov-action#1597</a></li>
<li>build(deps): bump github/codeql-action from 3.26.9 to 3.26.11 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1596">codecov/codecov-action#1596</a></li>
<li>build(deps-dev): bump <code>@​typescript-eslint/eslint-plugin</code>
from 8.8.0 to 8.8.1 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1600">codecov/codecov-action#1600</a></li>
<li>build(deps-dev): bump eslint from 9.11.1 to 9.12.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1598">codecov/codecov-action#1598</a></li>
<li>build(deps): bump github/codeql-action from 3.26.11 to 3.26.12 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1609">codecov/codecov-action#1609</a></li>
<li>build(deps): bump actions/checkout from 4.2.0 to 4.2.1 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1608">codecov/codecov-action#1608</a></li>
<li>build(deps): bump actions/upload-artifact from 4.4.0 to 4.4.3 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1607">codecov/codecov-action#1607</a></li>
<li>build(deps-dev): bump <code>@​typescript-eslint/parser</code> from
8.8.1 to 8.9.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1612">codecov/codecov-action#1612</a></li>
<li>build(deps-dev): bump <code>@​typescript-eslint/eslint-plugin</code>
from 8.8.1 to 8.9.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1611">codecov/codecov-action#1611</a></li>
<li>build(deps-dev): bump <code>@​typescript-eslint/eslint-plugin</code>
from 8.9.0 to 8.10.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1615">codecov/codecov-action#1615</a></li>
<li>build(deps-dev): bump eslint from 9.12.0 to 9.13.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1618">codecov/codecov-action#1618</a></li>
<li>build(deps): bump github/codeql-action from 3.26.12 to 3.26.13 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1617">codecov/codecov-action#1617</a></li>
<li>build(deps-dev): bump <code>@​typescript-eslint/parser</code> from
8.9.0 to 8.10.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1614">codecov/codecov-action#1614</a></li>
<li>build(deps-dev): bump <code>@​typescript-eslint/eslint-plugin</code>
from 8.10.0 to 8.11.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1620">codecov/codecov-action#1620</a></li>
<li>build(deps-dev): bump <code>@​typescript-eslint/parser</code> from
8.10.0 to 8.11.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1619">codecov/codecov-action#1619</a></li>
<li>build(deps-dev): bump <code>@​types/jest</code> from 29.5.13 to
29.5.14 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1622">codecov/codecov-action#1622</a></li>
<li>build(deps): bump actions/checkout from 4.2.1 to 4.2.2 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1625">codecov/codecov-action#1625</a></li>
<li>build(deps): bump github/codeql-action from 3.26.13 to 3.27.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1624">codecov/codecov-action#1624</a></li>
<li>build(deps-dev): bump <code>@​typescript-eslint/eslint-plugin</code>
from 8.11.0 to 8.12.1 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1626">codecov/codecov-action#1626</a></li>
<li>build(deps-dev): bump <code>@​typescript-eslint/eslint-plugin</code>
from 8.12.1 to 8.12.2 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/codecov/codecov-action/pull/1629">codecov/codecov-action#1629</a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md">codecov/codecov-action's
changelog</a>.</em></p>
<blockquote>
<h2>4.0.0-beta.2</h2>
<h3>Fixes</h3>
<ul>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/1085">#1085</a>
not adding -n if empty to do-upload command</li>
</ul>
<h2>4.0.0-beta.1</h2>
<p><code>v4</code> represents a move from the <a
href="https://github.com/codecov/uploader">universal uploader</a> to the
<a href="https://github.com/codecov/codecov-cli">Codecov CLI</a>.
Although this will unlock new features for our users, the CLI is not yet
at feature parity with the universal uploader.</p>
<h3>Breaking Changes</h3>
<ul>
<li>No current support for <code>aarch64</code> and <code>alpine</code>
architectures.</li>
<li>Tokenless uploading is unsuported</li>
<li>Various arguments to the Action have been removed</li>
</ul>
<h2>3.1.4</h2>
<h3>Fixes</h3>
<ul>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/967">#967</a>
Fix typo in README.md</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/971">#971</a>
fix: add back in working dir</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/969">#969</a>
fix: CLI option names for uploader</li>
</ul>
<h3>Dependencies</h3>
<ul>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/970">#970</a>
build(deps-dev): bump <code>@​types/node</code> from 18.15.12 to
18.16.3</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/979">#979</a>
build(deps-dev): bump <code>@​types/node</code> from 20.1.0 to
20.1.2</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/981">#981</a>
build(deps-dev): bump <code>@​types/node</code> from 20.1.2 to
20.1.4</li>
</ul>
<h2>3.1.3</h2>
<h3>Fixes</h3>
<ul>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/960">#960</a>
fix: allow for aarch64 build</li>
</ul>
<h3>Dependencies</h3>
<ul>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/957">#957</a>
build(deps-dev): bump jest-junit from 15.0.0 to 16.0.0</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/958">#958</a>
build(deps): bump openpgp from 5.7.0 to 5.8.0</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/959">#959</a>
build(deps-dev): bump <code>@​types/node</code> from 18.15.10 to
18.15.12</li>
</ul>
<h2>3.1.2</h2>
<h3>Fixes</h3>
<ul>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/718">#718</a>
Update README.md</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/851">#851</a>
Remove unsupported path_to_write_report argument</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/898">#898</a>
codeql-analysis.yml</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/901">#901</a>
Update README to contain correct information - inputs and negate
feature</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/955">#955</a>
fix: add in all the extra arguments for uploader</li>
</ul>
<h3>Dependencies</h3>
<ul>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/819">#819</a>
build(deps): bump openpgp from 5.4.0 to 5.5.0</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/835">#835</a>
build(deps): bump node-fetch from 3.2.4 to 3.2.10</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/840">#840</a>
build(deps): bump ossf/scorecard-action from 1.1.1 to 2.0.4</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/841">#841</a>
build(deps): bump <code>@​actions/core</code> from 1.9.1 to 1.10.0</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/843">#843</a>
build(deps): bump <code>@​actions/github</code> from 5.0.3 to 5.1.1</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/869">#869</a>
build(deps): bump node-fetch from 3.2.10 to 3.3.0</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/872">#872</a>
build(deps-dev): bump jest-junit from 13.2.0 to 15.0.0</li>
<li><a
href="https://redirect.github.com/codecov/codecov-action/issues/879">#879</a>
build(deps): bump decode-uri-component from 0.2.0 to 0.2.2</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/codecov/codecov-action/commit/5c47607acb93fed5485fdbf7232e8a31425f672a"><code>5c47607</code></a>
fix: override commit and pr values for PR cases (<a
href="https://redirect.github.com/codecov/codecov-action/issues/1657">#1657</a>)</li>
<li><a
href="https://github.com/codecov/codecov-action/commit/3b1354a6c45db9f1008891f4eafc1a7e94ce1d18"><code>3b1354a</code></a>
chore(release): 5.0.1 (<a
href="https://redirect.github.com/codecov/codecov-action/issues/1656">#1656</a>)</li>
<li><a
href="https://github.com/codecov/codecov-action/commit/2e2a9c6d5862d22e0f8cfb59d46bc47bf8eb1fe0"><code>2e2a9c6</code></a>
fix: update tokenless branch logic (<a
href="https://redirect.github.com/codecov/codecov-action/issues/1650">#1650</a>)</li>
<li><a
href="https://github.com/codecov/codecov-action/commit/cfc521b7a1dcdbcf0ecf149c162c19ff9bd9568c"><code>cfc521b</code></a>
Update README.md</li>
<li><a
href="https://github.com/codecov/codecov-action/commit/06425412c8015bc1ab2385b41c7ea204f77b91bf"><code>0642541</code></a>
fix: use marketplace v5 badge (<a
href="https://redirect.github.com/codecov/codecov-action/issues/1646">#1646</a>)</li>
<li><a
href="https://github.com/codecov/codecov-action/commit/968872560f81e7bdde9272853e65f2507c0eca7c"><code>9688725</code></a>
Update README.md</li>
<li><a
href="https://github.com/codecov/codecov-action/commit/2112eaec1bedbdabc7e93d5312449d0d62b07c60"><code>2112eae</code></a>
chore(deps): bump wrapper to 0.0.23 (<a
href="https://redirect.github.com/codecov/codecov-action/issues/1644">#1644</a>)</li>
<li><a
href="https://github.com/codecov/codecov-action/commit/193421c5b3d1aca4209c9754f224ca0d85729414"><code>193421c</code></a>
fixL use the correct source (<a
href="https://redirect.github.com/codecov/codecov-action/issues/1642">#1642</a>)</li>
<li><a
href="https://github.com/codecov/codecov-action/commit/6018df70b05b191502ce08196e76e30ea3578615"><code>6018df7</code></a>
fix: update container builds (<a
href="https://redirect.github.com/codecov/codecov-action/issues/1640">#1640</a>)</li>
<li><a
href="https://github.com/codecov/codecov-action/commit/eff1a643d6887ee5935d4ca343e9076dc377d416"><code>eff1a64</code></a>
fix: add missing vars (<a
href="https://redirect.github.com/codecov/codecov-action/issues/1638">#1638</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/codecov/codecov-action/compare/v4...v5">compare
view</a></li>
</ul>
</details>
<br />


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You can trigger Dependabot actions by commenting on this PR:
- `@dependabot rebase` will rebase this PR
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---
 .github/workflows/tests.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index f19e1b6edf..747fd9d673 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -380,7 +380,7 @@ jobs:
         uses: actions/download-artifact@v4
 
       - name: Upload coverage to Codecov
-        uses: codecov/codecov-action@v4
+        uses: codecov/codecov-action@v5
         env:
           CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
         with:

From 920a6173c55d8ff27c11be808796cbff6fbdcf5b Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 18 Nov 2024 20:27:31 -0500
Subject: [PATCH 07/22] Bump tblite from 0.3.0 to 0.4.0 (#2533)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps [tblite](https://github.com/tblite/tblite) from 0.3.0 to 0.4.0.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/tblite/tblite/releases">tblite's
releases</a>.</em></p>
<blockquote>
<h2>v0.4.0</h2>
<h2>Changelog</h2>
<ul>
<li>Fixing the spGFN gradient by <a
href="https://github.com/haneug"><code>@​haneug</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/90">tblite/tblite#90</a></li>
<li>Hamiltonian gradient: Avoid some repeated computations by <a
href="https://github.com/marvinfriede"><code>@​marvinfriede</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/92">tblite/tblite#92</a></li>
<li>Added new spin constants by <a
href="https://github.com/benbaed"><code>@​benbaed</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/96">tblite/tblite#96</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/99">tblite/tblite#99</a></li>
<li>Add support for spin polarization to Python and C API by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/117">tblite/tblite#117</a></li>
<li>Simplify electronic entropy calculation by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/79">tblite/tblite#79</a></li>
<li>Implementation of Charge-Extended Hückel method by <a
href="https://github.com/marcelmbn"><code>@​marcelmbn</code></a> and <a
href="https://github.com/thfroitzheim"><code>@​thfroitzheim</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/124">tblite/tblite#124</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/133">tblite/tblite#133</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/185">tblite/tblite#185</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/190">tblite/tblite#190</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/192">tblite/tblite#192</a></li>
<li>Add bind(C) to callback function of context by <a
href="https://github.com/pitsteinbach"><code>@​pitsteinbach</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/127">tblite/tblite#127</a></li>
<li>Add double dictionary by <a
href="https://github.com/pitsteinbach"><code>@​pitsteinbach</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/125">tblite/tblite#125</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/157">tblite/tblite#157</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/158">tblite/tblite#158</a></li>
<li>Add C and python API calls for solvation by <a
href="https://github.com/pitsteinbach"><code>@​pitsteinbach</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/130">tblite/tblite#130</a></li>
<li>Seperate exception module, add custom callback, add getter and
setter to results by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/149">tblite/tblite#149</a></li>
<li>Add error handling to callback API for logger by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/135">tblite/tblite#135</a></li>
<li>Handle mismatching number of total and unpaired electron by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/151">tblite/tblite#151</a></li>
<li>Add possibility to set all calculator parameters from ASE by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/150">tblite/tblite#150</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/160">tblite/tblite#160</a></li>
<li>Add QCSchema support by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/152">tblite/tblite#152</a></li>
<li>Adding post processing container by <a
href="https://github.com/pitsteinbach"><code>@​pitsteinbach</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/128">tblite/tblite#128</a></li>
<li>Remove redundant empty results tests by <a
href="https://github.com/pitsteinbach"><code>@​pitsteinbach</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/174">tblite/tblite#174</a></li>
<li>Python-interface: Loading spin-polarized quantities by <a
href="https://github.com/pro7onmatrix"><code>@​pro7onmatrix</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/170">tblite/tblite#170</a></li>
<li>Refactor <code>driver_guess</code> by <a
href="https://github.com/marcelmbn"><code>@​marcelmbn</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/189">tblite/tblite#189</a></li>
<li>Raise error for too heavy elements by <a
href="https://github.com/marcelmbn"><code>@​marcelmbn</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/188">tblite/tblite#188</a></li>
<li>adding symbols to atomic numbers conversion by <a
href="https://github.com/V-Alizade"><code>@​V-Alizade</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/218">tblite/tblite#218</a></li>
<li>Fix OMP memory leak in Coulomb matrix derivatives by <a
href="https://github.com/pprcht"><code>@​pprcht</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/154">tblite/tblite#154</a></li>
<li>Fix for integral transformation and diatomic frame overlap by <a
href="https://github.com/thfroitzheim"><code>@​thfroitzheim</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/186">tblite/tblite#186</a></li>
<li>Fix memory leak behavior of tblite when using MKL as LAPACK and BLAS
backend by <a
href="https://github.com/pitsteinbach"><code>@​pitsteinbach</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/173">tblite/tblite#173</a></li>
<li>Fix real precisions by <a
href="https://github.com/foxtran"><code>@​foxtran</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/204">tblite/tblite#204</a></li>
</ul>
<h2>Documentation</h2>
<ul>
<li>Add missing documentation for available matrices by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/102">tblite/tblite#102</a></li>
<li>README: No longer highly experimental? :) by <a
href="https://github.com/Andrew-S-Rosen"><code>@​Andrew-S-Rosen</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/153">tblite/tblite#153</a></li>
<li>Add parallel section to documentation by <a
href="https://github.com/pitsteinbach"><code>@​pitsteinbach</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/168">tblite/tblite#168</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/172">tblite/tblite#172</a></li>
<li>Update tblite-guess.1.adoc by <a
href="https://github.com/Albkat"><code>@​Albkat</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/177">tblite/tblite#177</a></li>
<li>Fix code block rendering by <a
href="https://github.com/marvinfriede"><code>@​marvinfriede</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/171">tblite/tblite#171</a></li>
</ul>
<h2>Infrastructure</h2>
<ul>
<li>Update CI by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/119">tblite/tblite#119</a></li>
<li>Fix wheel workflow by <a
href="https://github.com/marvinfriede"><code>@​marvinfriede</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/187">tblite/tblite#187</a></li>
<li>Upgrade to TOML Fortran 0.4.0 by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/108">tblite/tblite#108</a></li>
<li>Add config for RTD by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/141">tblite/tblite#141</a></li>
<li>Format Python directory, apply isort, fixes by ruff by <a
href="https://github.com/awvwgk"><code>@​awvwgk</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/148">tblite/tblite#148</a></li>
<li>Update CI to latest state by <a
href="https://github.com/marcelmbn"><code>@​marcelmbn</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/196">tblite/tblite#196</a></li>
<li>Add py.typed file to indicate support for type checkers by <a
href="https://github.com/Andrew-S-Rosen"><code>@​Andrew-S-Rosen</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/199">tblite/tblite#199</a></li>
<li>Fix wheel workflow by <a
href="https://github.com/marcelmbn"><code>@​marcelmbn</code></a> in <a
href="https://redirect.github.com/tblite/tblite/pull/197">tblite/tblite#197</a></li>
<li>Fix doc build by <a
href="https://github.com/thfroitzheim"><code>@​thfroitzheim</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/207">tblite/tblite#207</a></li>
<li>Gradient of the electrostatics potential by <a
href="https://github.com/thfroitzheim"><code>@​thfroitzheim</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/193">tblite/tblite#193</a></li>
<li>Update subproject versions in meson, cmake and fpm (simple-dftd3,
dftd4, ...) by <a
href="https://github.com/foxtran"><code>@​foxtran</code></a> and <a
href="https://github.com/thfroitzheim"><code>@​thfroitzheim</code></a>
in <a
href="https://redirect.github.com/tblite/tblite/pull/209">tblite/tblite#209</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/210">tblite/tblite#210</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/212">tblite/tblite#212</a>,
<a
href="https://redirect.github.com/tblite/tblite/pull/215">tblite/tblite#215</a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/tblite/tblite/commit/28b8d2927ebcba0cf72f225dc78c053f7a781fa8"><code>28b8d29</code></a>
Release version 0.4.0 (<a
href="https://redirect.github.com/tblite/tblite/issues/122">#122</a>)</li>
<li><a
href="https://github.com/tblite/tblite/commit/5346e8e53a054583b37d7df315b036df639f6284"><code>5346e8e</code></a>
Add symbols to atomic numbers conversion (<a
href="https://redirect.github.com/tblite/tblite/issues/218">#218</a>)</li>
<li><a
href="https://github.com/tblite/tblite/commit/1b74889ff8cf4f1f64fadaf46a8e8482fbfc154b"><code>1b74889</code></a>
Pin dependency versions also in meson.build (<a
href="https://redirect.github.com/tblite/tblite/issues/215">#215</a>)</li>
<li><a
href="https://github.com/tblite/tblite/commit/98fc504e9fc4c81d23bb40e163a0cf03c7306254"><code>98fc504</code></a>
Update subproject versions in meson, cmake and fpm (simple-dftd3, dftd4,
...)...</li>
<li><a
href="https://github.com/tblite/tblite/commit/ba9c91e8708b332fad67bcb021c7054b544ef7fb"><code>ba9c91e</code></a>
Update toml-f to v0.4.1 (<a
href="https://redirect.github.com/tblite/tblite/issues/212">#212</a>)</li>
<li><a
href="https://github.com/tblite/tblite/commit/8c701d12e37369454276cdfbf0ef7c1bd7b5c615"><code>8c701d1</code></a>
Update dftd4 to latest version (<a
href="https://redirect.github.com/tblite/tblite/issues/210">#210</a>)</li>
<li><a
href="https://github.com/tblite/tblite/commit/a3e3c16a0e54da454a48c9559b9d99484a018d67"><code>a3e3c16</code></a>
Gradient of the electrostatics potential (<a
href="https://redirect.github.com/tblite/tblite/issues/193">#193</a>)</li>
<li><a
href="https://github.com/tblite/tblite/commit/7cca87044fd1dd932f4f9dd634cf6af791129135"><code>7cca870</code></a>
Change to setup-micromamba (<a
href="https://redirect.github.com/tblite/tblite/issues/207">#207</a>)</li>
<li><a
href="https://github.com/tblite/tblite/commit/e1928210227909de951b4431676a4b5e5c330c26"><code>e192821</code></a>
Fix real precisions (<a
href="https://redirect.github.com/tblite/tblite/issues/204">#204</a>)</li>
<li><a
href="https://github.com/tblite/tblite/commit/36ff0cd9064138fe5e59e45190710522865a4c3a"><code>36ff0cd</code></a>
Fix wheel workflow (<a
href="https://redirect.github.com/tblite/tblite/issues/197">#197</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/tblite/tblite/compare/v0.3.0...v0.4.0">compare
view</a></li>
</ul>
</details>
<br />


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---
 tests/requirements-tblite.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-tblite.txt b/tests/requirements-tblite.txt
index 646c216c68..b7fe55c4aa 100644
--- a/tests/requirements-tblite.txt
+++ b/tests/requirements-tblite.txt
@@ -1 +1 @@
-tblite==0.3.0
+tblite==0.4.0

From 3b1f72a4dfa8b594363c2015229952328ae6705c Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 18 Nov 2024 20:27:40 -0500
Subject: [PATCH 08/22] Bump typer from 0.13.0 to 0.13.1 (#2536)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps [typer](https://github.com/fastapi/typer) from 0.13.0 to 0.13.1.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/fastapi/typer/releases">typer's
releases</a>.</em></p>
<blockquote>
<h2>0.13.1</h2>
<h3>Features</h3>
<ul>
<li>✨ Remove Rich tags when showing completion text. PR <a
href="https://redirect.github.com/fastapi/typer/pull/877">#877</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>✨ Render Rich markup as HTML in Markdown docs. PR <a
href="https://redirect.github.com/fastapi/typer/pull/847">#847</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>✨ Support cp850 encoding for auto-completion in PowerShell. PR <a
href="https://redirect.github.com/fastapi/typer/pull/808">#808</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>✨ Allow gettext translation of help message. PR <a
href="https://redirect.github.com/fastapi/typer/pull/886">#886</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
</ul>
<h3>Refactors</h3>
<ul>
<li>🐛 Fix printing HTML from Rich output. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1055">#1055</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
</ul>
<h3>Docs</h3>
<ul>
<li>📝 Update markdown includes to use the new simpler format. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1054">#1054</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
</ul>
<h3>Internal</h3>
<ul>
<li>⬆ Bump ruff from 0.7.3 to 0.7.4. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1051">#1051</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1047">#1047</a> by
<a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>⬆ Bump ruff from 0.7.2 to 0.7.3. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1046">#1046</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump tiangolo/latest-changes from 0.3.1 to 0.3.2. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1044">#1044</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Update pytest-cov requirement from <!-- raw HTML omitted
-->=2.10.0,&lt;7.0.0. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1033">#1033</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
</ul>
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/fastapi/typer/blob/master/docs/release-notes.md">typer's
changelog</a>.</em></p>
<blockquote>
<h2>0.13.1</h2>
<h3>Features</h3>
<ul>
<li>✨ Remove Rich tags when showing completion text. PR <a
href="https://redirect.github.com/fastapi/typer/pull/877">#877</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>✨ Render Rich markup as HTML in Markdown docs. PR <a
href="https://redirect.github.com/fastapi/typer/pull/847">#847</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>✨ Support cp850 encoding for auto-completion in PowerShell. PR <a
href="https://redirect.github.com/fastapi/typer/pull/808">#808</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
<li>✨ Allow gettext translation of help message. PR <a
href="https://redirect.github.com/fastapi/typer/pull/886">#886</a> by <a
href="https://github.com/svlandeg"><code>@​svlandeg</code></a>.</li>
</ul>
<h3>Refactors</h3>
<ul>
<li>🐛 Fix printing HTML from Rich output. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1055">#1055</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
</ul>
<h3>Docs</h3>
<ul>
<li>📝 Update markdown includes to use the new simpler format. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1054">#1054</a> by
<a href="https://github.com/tiangolo"><code>@​tiangolo</code></a>.</li>
</ul>
<h3>Internal</h3>
<ul>
<li>⬆ Bump ruff from 0.7.3 to 0.7.4. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1051">#1051</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ [pre-commit.ci] pre-commit autoupdate. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1047">#1047</a> by
<a
href="https://github.com/apps/pre-commit-ci"><code>@​pre-commit-ci[bot]</code></a>.</li>
<li>⬆ Bump ruff from 0.7.2 to 0.7.3. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1046">#1046</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Bump tiangolo/latest-changes from 0.3.1 to 0.3.2. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1044">#1044</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
<li>⬆ Update pytest-cov requirement from <!-- raw HTML omitted
-->=2.10.0,&lt;7.0.0. PR <a
href="https://redirect.github.com/fastapi/typer/pull/1033">#1033</a> by
<a
href="https://github.com/apps/dependabot"><code>@​dependabot[bot]</code></a>.</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/fastapi/typer/commit/53e21fdc09fe2ef2310a7e4a7e353f42712d5770"><code>53e21fd</code></a>
🔖 Release version 0.13.1</li>
<li><a
href="https://github.com/fastapi/typer/commit/77a7216818c3b37128e4e85cf60f6af87e7e0bd4"><code>77a7216</code></a>
📝 Update release notes</li>
<li><a
href="https://github.com/fastapi/typer/commit/12459d21f2026dd806259702d934db0138196921"><code>12459d2</code></a>
📝 Update markdown includes to use the new simpler format (<a
href="https://redirect.github.com/fastapi/typer/issues/1054">#1054</a>)</li>
<li><a
href="https://github.com/fastapi/typer/commit/f802688f1c35f9ba07c2e2ce5b9e845f01fff3b6"><code>f802688</code></a>
📝 Update release notes</li>
<li><a
href="https://github.com/fastapi/typer/commit/603f39d2bfbe283b6138ff87188022d5535ae772"><code>603f39d</code></a>
✨ Remove Rich tags when showing completion text (<a
href="https://redirect.github.com/fastapi/typer/issues/877">#877</a>)</li>
<li><a
href="https://github.com/fastapi/typer/commit/20d4e5c76739ddb21e78d3f3166d6f73a09f5aad"><code>20d4e5c</code></a>
📝 Update release notes</li>
<li><a
href="https://github.com/fastapi/typer/commit/376b907e3cd8f9cc05afa4f77b24e26d19f60e71"><code>376b907</code></a>
🐛 Fix printing HTML from Rich output (<a
href="https://redirect.github.com/fastapi/typer/issues/1055">#1055</a>)</li>
<li><a
href="https://github.com/fastapi/typer/commit/2f9ce51b2716b22014d82f13cc1ecdfc34e75ad7"><code>2f9ce51</code></a>
📝 Update release notes</li>
<li><a
href="https://github.com/fastapi/typer/commit/5996fc18cb4cf29854b592061581f42957ce6257"><code>5996fc1</code></a>
✨ Render Rich markup as HTML in Markdown docs (<a
href="https://redirect.github.com/fastapi/typer/issues/847">#847</a>)</li>
<li><a
href="https://github.com/fastapi/typer/commit/a6167b381a5d270fb44848a492bea6f3547178c8"><code>a6167b3</code></a>
📝 Update release notes</li>
<li>Additional commits viewable in <a
href="https://github.com/fastapi/typer/compare/0.13.0...0.13.1">compare
view</a></li>
</ul>
</details>
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---
 tests/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements.txt b/tests/requirements.txt
index e554d7269d..13bfd0d7a9 100644
--- a/tests/requirements.txt
+++ b/tests/requirements.txt
@@ -9,4 +9,4 @@ pydantic==2.9.2
 pydantic-settings==2.6.1
 pymatgen==2024.10.3
 ruamel.yaml==0.18.6
-typer==0.13.0
+typer==0.13.1

From c0b7dbb320a90c648d9d0be97a92150306dd4072 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 18 Nov 2024 20:27:45 -0500
Subject: [PATCH 09/22] Bump parsl[monitoring] from 2024.11.4 to 2024.11.11
 (#2537)

Bumps [parsl[monitoring]](https://github.com/Parsl/parsl) from 2024.11.4
to 2024.11.11.
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/Parsl/parsl/commit/45d60a8b6913fcc79c4f9ed4b00f6aa5b8ccc2dc"><code>45d60a8</code></a>
Remove some SSH channel related test infrastructure (<a
href="https://redirect.github.com/Parsl/parsl/issues/3693">#3693</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/3151ca84e083524645e7989c337573f8f773d4cd"><code>3151ca8</code></a>
TaskVine Executor: add vine tune to manager config (<a
href="https://redirect.github.com/Parsl/parsl/issues/3692">#3692</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/166cb03ba3b651f088bfb0403d66baee22973241"><code>166cb03</code></a>
Fix filesystem radio type annotation: the wrong kind of Queue (<a
href="https://redirect.github.com/Parsl/parsl/issues/3691">#3691</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/3fa1599477f83214e85adc1127a7aa953304afa4"><code>3fa1599</code></a>
Remove unused channel directory handling code (<a
href="https://redirect.github.com/Parsl/parsl/issues/3689">#3689</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/e27f16207e724cb8f0cb7150687bad93042754c6"><code>e27f162</code></a>
Remove remote channel script directory handling (<a
href="https://redirect.github.com/Parsl/parsl/issues/3688">#3688</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/0fec4a0b0992621fdf20de2a56c854299937bcbd"><code>0fec4a0</code></a>
Remove constant LocalChannel.hostname attribute (<a
href="https://redirect.github.com/Parsl/parsl/issues/3687">#3687</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/b0921956fcfc2dd5127dce6c3731a5d5458246b1"><code>b092195</code></a>
Remove channel closing at shutdown (<a
href="https://redirect.github.com/Parsl/parsl/issues/3685">#3685</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/b531ecc34fb8815bcf31183ba9406cb8a14b97ae"><code>b531ecc</code></a>
Remove the opportunity to configure script_dir for LocalChannel (<a
href="https://redirect.github.com/Parsl/parsl/issues/3684">#3684</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/0fe4ead52803f2f2d9c2533f46d995cf3d777609"><code>0fe4ead</code></a>
Move Channel plugin documentation to a removed section (<a
href="https://redirect.github.com/Parsl/parsl/issues/3686">#3686</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/6683f5b0835c8f291d2ea87487a9997889ec7012"><code>6683f5b</code></a>
Remove Channel.execute_wait environment wait handling, part of <a
href="https://redirect.github.com/Parsl/parsl/issues/3515">#3515</a> (<a
href="https://redirect.github.com/Parsl/parsl/issues/3682">#3682</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/Parsl/parsl/compare/2024.11.04...2024.11.11">compare
view</a></li>
</ul>
</details>
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---
 tests/requirements-parsl.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-parsl.txt b/tests/requirements-parsl.txt
index 0065cd53da..b4d5c1ce14 100644
--- a/tests/requirements-parsl.txt
+++ b/tests/requirements-parsl.txt
@@ -1 +1 @@
-parsl[monitoring]==2024.11.4
+parsl[monitoring]==2024.11.11

From 9364a64375819928a065c888ea28e15fd5de32a2 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 18 Nov 2024 20:27:52 -0500
Subject: [PATCH 10/22] Bump torch-dftd from 0.4.0 to 0.5.0 (#2539)

Bumps torch-dftd from 0.4.0 to 0.5.0.


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---
 tests/requirements-mlp.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-mlp.txt b/tests/requirements-mlp.txt
index 24f5e823e1..c9b689f95f 100644
--- a/tests/requirements-mlp.txt
+++ b/tests/requirements-mlp.txt
@@ -1,3 +1,3 @@
 chgnet==0.4.0
 mace-torch==0.3.6
-torch-dftd==0.4.0
+torch-dftd==0.5.0

From 0bfd70e403d13894fb4ba300391eecacaf7e570d Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 18 Nov 2024 20:27:57 -0500
Subject: [PATCH 11/22] Bump covalent-cloud from 0.81.0 to 0.84.0 (#2540)

Bumps [covalent-cloud](https://github.com/AgnostiqHQ/covalent-cloud-sdk)
from 0.81.0 to 0.84.0.
<details>
<summary>Commits</summary>
<ul>
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---
 tests/requirements-covalent.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-covalent.txt b/tests/requirements-covalent.txt
index f5a39f9877..ecfba01a42 100644
--- a/tests/requirements-covalent.txt
+++ b/tests/requirements-covalent.txt
@@ -1,3 +1,3 @@
 covalent==0.235.1rc0
-covalent-cloud==0.81.0
+covalent-cloud==0.84.0
 covalent-slurm-plugin==0.18.0

From d8fe181931f8ddd0f05954868922a03ac441580b Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 18 Nov 2024 20:28:19 -0500
Subject: [PATCH 12/22] Bump mace-torch from 0.3.6 to 0.3.8 (#2541)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps [mace-torch](https://github.com/ACEsuit/mace) from 0.3.6 to 0.3.8.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/ACEsuit/mace/releases">mace-torch's
releases</a>.</em></p>
<blockquote>
<h2>v0.3.8</h2>
<h2>What's Changed</h2>
<ul>
<li>Fix compile_mode in MACECalculator by <a
href="https://github.com/hatemhelal"><code>@​hatemhelal</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/632">ACEsuit/mace#632</a></li>
<li>Update README.md using bibtex by <a
href="https://github.com/jcwang587"><code>@​jcwang587</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/628">ACEsuit/mace#628</a></li>
<li>Fix multihead prediction for eval_configs.py by <a
href="https://github.com/beckobert"><code>@​beckobert</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/642">ACEsuit/mace#642</a></li>
<li>Updating compiler support and test cases by <a
href="https://github.com/hatemhelal"><code>@​hatemhelal</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/634">ACEsuit/mace#634</a></li>
<li>Turn json keys representing elements into ints by <a
href="https://github.com/ThomasWarford"><code>@​ThomasWarford</code></a>
in <a
href="https://redirect.github.com/ACEsuit/mace/pull/652">ACEsuit/mace#652</a></li>
<li>Fix file name of swa checkpoints by <a
href="https://github.com/beckobert"><code>@​beckobert</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/648">ACEsuit/mace#648</a></li>
<li>Increasing loss output digits by <a
href="https://github.com/vue1999"><code>@​vue1999</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/658">ACEsuit/mace#658</a></li>
<li>Fix model paths by <a
href="https://github.com/ElliottKasoar"><code>@​ElliottKasoar</code></a>
in <a
href="https://redirect.github.com/ACEsuit/mace/pull/654">ACEsuit/mace#654</a></li>
<li>Density normalization by <a
href="https://github.com/ilyes319"><code>@​ilyes319</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/667">ACEsuit/mace#667</a></li>
<li>Bug fix and density normalization by <a
href="https://github.com/ilyes319"><code>@​ilyes319</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/668">ACEsuit/mace#668</a></li>
<li>List default arguments with --help by <a
href="https://github.com/vue1999"><code>@​vue1999</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/670">ACEsuit/mace#670</a></li>
<li>Fixing multihead finetuning with density normalization by <a
href="https://github.com/CheukHinHoJerry"><code>@​CheukHinHoJerry</code></a>
in <a
href="https://redirect.github.com/ACEsuit/mace/pull/682">ACEsuit/mace#682</a></li>
<li>Add default argparser to main by <a
href="https://github.com/ilyes319"><code>@​ilyes319</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/671">ACEsuit/mace#671</a></li>
<li>fix case with multihead foundation model by <a
href="https://github.com/ilyes319"><code>@​ilyes319</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/687">ACEsuit/mace#687</a></li>
<li>Add DOI badge by <a
href="https://github.com/ilyes319"><code>@​ilyes319</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/688">ACEsuit/mace#688</a></li>
<li>fix name in foundation head args by <a
href="https://github.com/ilyes319"><code>@​ilyes319</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/689">ACEsuit/mace#689</a></li>
<li>bump version by <a
href="https://github.com/ilyes319"><code>@​ilyes319</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/690">ACEsuit/mace#690</a></li>
</ul>
<h2>New Contributors</h2>
<ul>
<li><a href="https://github.com/jcwang587"><code>@​jcwang587</code></a>
made their first contribution in <a
href="https://redirect.github.com/ACEsuit/mace/pull/628">ACEsuit/mace#628</a></li>
<li><a href="https://github.com/beckobert"><code>@​beckobert</code></a>
made their first contribution in <a
href="https://redirect.github.com/ACEsuit/mace/pull/642">ACEsuit/mace#642</a></li>
<li><a
href="https://github.com/ThomasWarford"><code>@​ThomasWarford</code></a>
made their first contribution in <a
href="https://redirect.github.com/ACEsuit/mace/pull/652">ACEsuit/mace#652</a></li>
<li><a
href="https://github.com/CheukHinHoJerry"><code>@​CheukHinHoJerry</code></a>
made their first contribution in <a
href="https://redirect.github.com/ACEsuit/mace/pull/682">ACEsuit/mace#682</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/ACEsuit/mace/compare/v0.3.7...v0.3.8">https://github.com/ACEsuit/mace/compare/v0.3.7...v0.3.8</a></p>
<h2>v0.3.7</h2>
<h2>Main new features</h2>
<ul>
<li>Finetuning with multiheads : <a
href="https://mace-docs.readthedocs.io/en/latest/guide/finetuning.html">https://mace-docs.readthedocs.io/en/latest/guide/finetuning.html</a></li>
<li>Training with multiheads: <a
href="https://mace-docs.readthedocs.io/en/latest/guide/multihead_training.html">https://mace-docs.readthedocs.io/en/latest/guide/multihead_training.html</a></li>
</ul>
<h2>What's Changed</h2>
<ul>
<li>Add Intel XPU device by <a
href="https://github.com/jharrymoore"><code>@​jharrymoore</code></a> in
<a
href="https://redirect.github.com/ACEsuit/mace/pull/340">ACEsuit/mace#340</a></li>
<li>Intel by <a
href="https://github.com/ilyes319"><code>@​ilyes319</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/356">ACEsuit/mace#356</a></li>
<li>Fix logic that deals with IsolatedAtom and 1-atom configuration by
<a href="https://github.com/bernstei"><code>@​bernstei</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/393">ACEsuit/mace#393</a></li>
<li>Fix bug that overwrote REF_* keys when those were the explicitly
specified keys for the training reference quantities by <a
href="https://github.com/bernstei"><code>@​bernstei</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/403">ACEsuit/mace#403</a></li>
<li>Fix check for patience that fails if swa start was not specified by
<a href="https://github.com/bernstei"><code>@​bernstei</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/405">ACEsuit/mace#405</a></li>
<li>fix incorrect conversion of forces from calculator to atoms.arrays
for finetuning pbe mp replay head by <a
href="https://github.com/bernstei"><code>@​bernstei</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/409">ACEsuit/mace#409</a></li>
<li>Better fix for PR <a
href="https://redirect.github.com/ACEsuit/mace/issues/405">#405</a>, fix
patience check when swa is not active by <a
href="https://github.com/bernstei"><code>@​bernstei</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/411">ACEsuit/mace#411</a></li>
<li>fix np.random.choice issue when subselecting from pre-trained
configs for multihead fine tune by <a
href="https://github.com/bernstei"><code>@​bernstei</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/448">ACEsuit/mace#448</a></li>
<li>validation loss printed during training is not actually for the
specific head by <a
href="https://github.com/bernstei"><code>@​bernstei</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/449">ACEsuit/mace#449</a></li>
<li>get rid of all stress/n_atoms by <a
href="https://github.com/bernstei"><code>@​bernstei</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/443">ACEsuit/mace#443</a></li>
<li>Stage two weights by <a
href="https://github.com/vue1999"><code>@​vue1999</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/522">ACEsuit/mace#522</a></li>
<li>remove mypy from checks by <a
href="https://github.com/ilyes319"><code>@​ilyes319</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/529">ACEsuit/mace#529</a></li>
<li>Fix MAE table for universal loss by <a
href="https://github.com/ilyes319"><code>@​ilyes319</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/548">ACEsuit/mace#548</a></li>
<li>Create py.typed by <a
href="https://github.com/Andrew-S-Rosen"><code>@​Andrew-S-Rosen</code></a>
in <a
href="https://redirect.github.com/ACEsuit/mace/pull/554">ACEsuit/mace#554</a></li>
<li>Improve Log Details by <a
href="https://github.com/vue1999"><code>@​vue1999</code></a> in <a
href="https://redirect.github.com/ACEsuit/mace/pull/553">ACEsuit/mace#553</a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/ACEsuit/mace/commit/bd412319b11c5f56c37cec6c4cfae74b2a49ff43"><code>bd41231</code></a>
Merge pull request <a
href="https://redirect.github.com/ACEsuit/mace/issues/690">#690</a> from
ACEsuit/develop</li>
<li><a
href="https://github.com/ACEsuit/mace/commit/eca0bb27f9fb9141a10129bfb7a978f68d35d99d"><code>eca0bb2</code></a>
bump version</li>
<li><a
href="https://github.com/ACEsuit/mace/commit/8ffece8dcdc6d2ee0ac4ec7d7b0a10321d333393"><code>8ffece8</code></a>
Merge pull request <a
href="https://redirect.github.com/ACEsuit/mace/issues/689">#689</a> from
ACEsuit/develop</li>
<li><a
href="https://github.com/ACEsuit/mace/commit/c57b6dac8922b9d2a32e3790fe1b9bfc967ccb7d"><code>c57b6da</code></a>
fix name in foundation head args</li>
<li><a
href="https://github.com/ACEsuit/mace/commit/624e55779f6892658264e409a9981d55f7a9d660"><code>624e557</code></a>
Merge pull request <a
href="https://redirect.github.com/ACEsuit/mace/issues/688">#688</a> from
ACEsuit/develop</li>
<li><a
href="https://github.com/ACEsuit/mace/commit/b32b3e2df1b4a99f690f9c0b9956462888c75ed5"><code>b32b3e2</code></a>
Add DOI badge</li>
<li><a
href="https://github.com/ACEsuit/mace/commit/83b30b8ac27ceacedfbc7b4c6dc0ad4a337a8a9f"><code>83b30b8</code></a>
Merge pull request <a
href="https://redirect.github.com/ACEsuit/mace/issues/687">#687</a> from
ACEsuit/develop</li>
<li><a
href="https://github.com/ACEsuit/mace/commit/68149a7b691aaa5e8576d8391b8e0a843f7cdd22"><code>68149a7</code></a>
add selection head script to cli</li>
<li><a
href="https://github.com/ACEsuit/mace/commit/1300ad13dfce29d25b6492e7fd7699bc104b11fb"><code>1300ad1</code></a>
fix case with multihead foundation model</li>
<li><a
href="https://github.com/ACEsuit/mace/commit/f1e671d634bb828fd4ad6f77ac2c131ba6d0c45b"><code>f1e671d</code></a>
Merge pull request <a
href="https://redirect.github.com/ACEsuit/mace/issues/671">#671</a> from
ACEsuit/develop</li>
<li>Additional commits viewable in <a
href="https://github.com/ACEsuit/mace/compare/v0.3.6...v0.3.8">compare
view</a></li>
</ul>
</details>
<br />


[![Dependabot compatibility
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---
 tests/requirements-mlp.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-mlp.txt b/tests/requirements-mlp.txt
index c9b689f95f..ff5a7d2095 100644
--- a/tests/requirements-mlp.txt
+++ b/tests/requirements-mlp.txt
@@ -1,3 +1,3 @@
 chgnet==0.4.0
-mace-torch==0.3.6
+mace-torch==0.3.8
 torch-dftd==0.5.0

From feb8e2b475a0a91cf0d346c96c103c116d8ea93f Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 18 Nov 2024 20:28:25 -0500
Subject: [PATCH 13/22] Bump dask[distributed] from 2024.11.1 to 2024.11.2
 (#2542)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps [dask[distributed]](https://github.com/dask/dask) from 2024.11.1
to 2024.11.2.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/dask/dask/releases">dask[distributed]'s
releases</a>.</em></p>
<blockquote>
<h2>2024.11.2</h2>
<h2>Changes</h2>
<ul>
<li>Remove only_refs parsing option for TaskSpec <a
href="https://github.com/fjetter"><code>@​fjetter</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11511">#11511</a>)</li>
<li>Fix upstream ci pandas Series repr error <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11514">#11514</a>)</li>
<li>Implement <code>nanpercentile</code> for dask arrays <a
href="https://github.com/phofl"><code>@​phofl</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11505">#11505</a>)</li>
<li>Bump JamesIves/github-pages-deploy-action from 4.6.8 to 4.6.9 <a
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<li>Add fuse method for TaskSpec <a
href="https://github.com/fjetter"><code>@​fjetter</code></a> (<a
href="https://redirect.github.com/dask/dask/issues/11509">#11509</a>)</li>
</ul>
<p>See the <a
href="https://docs.dask.org/en/stable/changelog.html">Changelog</a> for
more information.</p>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/dask/dask/commit/f0e08da769e5bdf5de74df66cfa504d6b294d1e0"><code>f0e08da</code></a>
Version 2024.11.2</li>
<li><a
href="https://github.com/dask/dask/commit/74e35d1830b756233edcd298024557ed84c2c0ec"><code>74e35d1</code></a>
Remove only_refs parsing option for TaskSpec (<a
href="https://redirect.github.com/dask/dask/issues/11511">#11511</a>)</li>
<li><a
href="https://github.com/dask/dask/commit/43e58b242fed61985c81300f28354b55d5ab20cd"><code>43e58b2</code></a>
Fix upstream ci pandas Series repr error (<a
href="https://redirect.github.com/dask/dask/issues/11514">#11514</a>)</li>
<li><a
href="https://github.com/dask/dask/commit/16f228444cc1ddae9a498649a19a145689e6a5d8"><code>16f2284</code></a>
Implement <code>nanpercentile</code> for dask arrays (<a
href="https://redirect.github.com/dask/dask/issues/11505">#11505</a>)</li>
<li><a
href="https://github.com/dask/dask/commit/e36e151a3c4ef66f4bfb8cb015d35531761ab507"><code>e36e151</code></a>
Bump JamesIves/github-pages-deploy-action from 4.6.8 to 4.6.9 (<a
href="https://redirect.github.com/dask/dask/issues/11512">#11512</a>)</li>
<li><a
href="https://github.com/dask/dask/commit/bfa88d2b6fc43ae4a1e961f7d2144c5679626498"><code>bfa88d2</code></a>
Add fuse method for TaskSpec (<a
href="https://redirect.github.com/dask/dask/issues/11509">#11509</a>)</li>
<li>See full diff in <a
href="https://github.com/dask/dask/compare/2024.11.1...2024.11.2">compare
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</ul>
</details>
<br />


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---
 tests/requirements-dask.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-dask.txt b/tests/requirements-dask.txt
index 4f4bd7f129..591ec87b69 100644
--- a/tests/requirements-dask.txt
+++ b/tests/requirements-dask.txt
@@ -1,2 +1,2 @@
-dask[distributed]==2024.11.1
+dask[distributed]==2024.11.2
 dask-jobqueue==0.9.0

From b6fa94348021cea9edfe08dcabd083ac64d0a3ff Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 18 Nov 2024 20:28:30 -0500
Subject: [PATCH 14/22] Bump prefect[dask] from 3.1.1 to 3.1.2 (#2543)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps [prefect[dask]](https://github.com/PrefectHQ/prefect) from 3.1.1
to 3.1.2.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/PrefectHQ/prefect/releases">prefect[dask]'s
releases</a>.</em></p>
<blockquote>
<h2>3.1.2: Bug Fixes, Chicago Style, Hold the Ketchup</h2>
<h3>Bug Fixes 🐞</h3>
<ul>
<li>Fixes the arguments for the url generation in BaseWorker by <a
href="https://github.com/sam-phinizy"><code>@​sam-phinizy</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15982">PrefectHQ/prefect#15982</a></li>
<li>Fix formatting of <code>list</code> and <code>set</code> settings
values when marshaling to environment variables by <a
href="https://github.com/GalLadislav"><code>@​GalLadislav</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15979">PrefectHQ/prefect#15979</a></li>
<li>fix delete block type prompt by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15989">PrefectHQ/prefect#15989</a></li>
<li>Ensure <code>.env</code> files load only Prefect environment
variables by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15975">PrefectHQ/prefect#15975</a></li>
<li>Fix bugs in precedence of settings sources for settings with
multiple validation aliases by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15995">PrefectHQ/prefect#15995</a></li>
<li>Persist failed data at random locations by <a
href="https://github.com/cicdw"><code>@​cicdw</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15991">PrefectHQ/prefect#15991</a></li>
<li>Fixes the worker url slug by <a
href="https://github.com/sam-phinizy"><code>@​sam-phinizy</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15964">PrefectHQ/prefect#15964</a></li>
<li>Add in ability to pass additional formatting kwargs to
<code>url_for</code> by <a
href="https://github.com/sam-phinizy"><code>@​sam-phinizy</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15974">PrefectHQ/prefect#15974</a></li>
<li>Fix the key for worker metadata: it's is just &quot;metadata&quot;
by <a href="https://github.com/abrookins"><code>@​abrookins</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15965">PrefectHQ/prefect#15965</a></li>
</ul>
<h3>Integrations &amp; Dependencies 🤝</h3>
<ul>
<li>adopt <code>async_dispatch</code> for slack collection by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15973">PrefectHQ/prefect#15973</a></li>
</ul>
<h3>Development &amp; Tidiness 🧹</h3>
<ul>
<li>Update <code>@​prefecthq/prefect-design</code> to version 2.14.9 by
<a
href="https://github.com/marvin-robot"><code>@​marvin-robot</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15961">PrefectHQ/prefect#15961</a></li>
<li>Update <code>@​prefecthq/prefect-ui-library</code> to version
3.11.16 by <a
href="https://github.com/marvin-robot"><code>@​marvin-robot</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15956">PrefectHQ/prefect#15956</a></li>
<li>handle possible <code>None</code> value by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15966">PrefectHQ/prefect#15966</a></li>
<li>Add sidebar to v2 UI by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15925">PrefectHQ/prefect#15925</a></li>
<li>[UI v2] Add ability to create new variables by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15962">PrefectHQ/prefect#15962</a></li>
<li>update <code>asyncio_default_fixture_loop_scope</code> in all
collections by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15976">PrefectHQ/prefect#15976</a></li>
<li>Update <code>@​prefecthq/prefect-ui-library</code> to version
3.11.18 by <a
href="https://github.com/marvin-robot"><code>@​marvin-robot</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15994">PrefectHQ/prefect#15994</a></li>
<li>Update worker to give worker labels to flow runs during submittal by
<a
href="https://github.com/bunchesofdonald"><code>@​bunchesofdonald</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15983">PrefectHQ/prefect#15983</a></li>
<li>clarify state hook docs by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15977">PrefectHQ/prefect#15977</a></li>
<li>Fix documentation link to deployment concept by <a
href="https://github.com/sandertan"><code>@​sandertan</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15988">PrefectHQ/prefect#15988</a></li>
</ul>
<h2>New Contributors</h2>
<ul>
<li><a href="https://github.com/sandertan"><code>@​sandertan</code></a>
made their first contribution in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15988">PrefectHQ/prefect#15988</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/PrefectHQ/prefect/compare/3.1.1...3.1.2">https://github.com/PrefectHQ/prefect/compare/3.1.1...3.1.2</a></p>
<h2>3.1.2.dev2: Nightly Development Release</h2>
<!-- raw HTML omitted -->
<h2>What's Changed</h2>
<h3>Bug Fixes 🐞</h3>
<ul>
<li>Fixes the arguments for the url generation in BaseWorker by <a
href="https://github.com/sam-phinizy"><code>@​sam-phinizy</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15982">PrefectHQ/prefect#15982</a></li>
</ul>
<h3>Integrations &amp; Dependencies 🤝</h3>
<ul>
<li>adopt <code>async_dispatch</code> for slack collection by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15973">PrefectHQ/prefect#15973</a></li>
</ul>
<h3>Development &amp; Tidiness 🧹</h3>
<ul>
<li>Add sidebar to v2 UI by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15925">PrefectHQ/prefect#15925</a></li>
<li>[UI v2] Add ability to create new variables by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15962">PrefectHQ/prefect#15962</a></li>
</ul>
<h3>Uncategorized</h3>
<ul>
<li>Fixes the worker url slug by <a
href="https://github.com/sam-phinizy"><code>@​sam-phinizy</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15964">PrefectHQ/prefect#15964</a></li>
<li>Fix the key for worker metadata: it's is just &quot;metadata&quot;
by <a href="https://github.com/abrookins"><code>@​abrookins</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15965">PrefectHQ/prefect#15965</a></li>
<li>Add in ability to pass additional formatting kwargs to
<code>url_for</code> by <a
href="https://github.com/sam-phinizy"><code>@​sam-phinizy</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15974">PrefectHQ/prefect#15974</a></li>
<li>clarify state hook docs by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15977">PrefectHQ/prefect#15977</a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/02b99f0a756f0395e4292952dcb2d963fc839750"><code>02b99f0</code></a>
Persist failed data at random locations (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15991">#15991</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/a8767707f9d04484aed731332bb615987092c627"><code>a876770</code></a>
Fix bugs in precedence of settings sources for settings with multiple
validat...</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/db20a141fa5e258b19df4f8785aeb9627ec2bec6"><code>db20a14</code></a>
Update <code>@​prefecthq/prefect-ui-library</code> to version 3.11.18
(<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15994">#15994</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/62b263701465db8ff9d22fc0e8bf06bdc0b04c0d"><code>62b2637</code></a>
update <code>asyncio_default_fixture_loop_scope</code> in all
collections (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15976">#15976</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/f562ab6ab58515fcf944022661798e019382e335"><code>f562ab6</code></a>
Ensure <code>.env</code> files load only Prefect environment variables
(<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15975">#15975</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/46fa10ba63a24400a523d94c1c4663dc14aec723"><code>46fa10b</code></a>
Update worker to give worker labels to flow runs during submittal (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15983">#15983</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/61daf53f5859d36e07baf0cf3ca3e664328d4f67"><code>61daf53</code></a>
fix delete block type prompt (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15989">#15989</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/a93c7fd29f4a7a933fbebfa1c772b60bc4560511"><code>a93c7fd</code></a>
Fix formatting of <code>list</code> and <code>set</code> settings values
when marshaling to environ...</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/2b018eaad29e061f7695e147a29f23f231b87ab6"><code>2b018ea</code></a>
Fix documentation link to deployment concept (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15988">#15988</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/98592bd40e9457718248345f21a5463bf9eab689"><code>98592bd</code></a>
Fixes the arguments for the url generation in BaseWorker (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15982">#15982</a>)</li>
<li>Additional commits viewable in <a
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---
 tests/requirements-prefect.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-prefect.txt b/tests/requirements-prefect.txt
index 2fe2c822a1..6779ba9298 100644
--- a/tests/requirements-prefect.txt
+++ b/tests/requirements-prefect.txt
@@ -1,2 +1,2 @@
 dask-jobqueue==0.9.0
-prefect[dask]==3.1.1
+prefect[dask]==3.1.2

From 00edecde354a0bca0a01c37b203cd05db126417e Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 18 Nov 2024 20:28:44 -0500
Subject: [PATCH 15/22] Bump phonopy from 2.30.0 to 2.30.1 (#2534)

Bumps [phonopy](https://github.com/phonopy/phonopy) from 2.30.0 to
2.30.1.
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/phonopy/phonopy/blob/develop/doc/changelog.md">phonopy's
changelog</a>.</em></p>
<blockquote>
<h2>Nov-13-2024: Version 2.30.1</h2>
<ul>
<li>Release for attempting conda-forge packaging except for a few very
minor
change.</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
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Merge branch 'develop'</li>
<li><a
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Merge pull request <a
href="https://redirect.github.com/phonopy/phonopy/issues/450">#450</a>
from phonopy/release</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/388f2b26f8cf14ff26208e2e6f796f73c301108a"><code>388f2b2</code></a>
Remove numpy-v2 specific github workflow</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/b8784875b6d79cb7336840b84f92df3446c673b6"><code>b878487</code></a>
Set version 2.30.1</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/fa4ea15feae060d41f1a3d32ec170eafcfcc71b5"><code>fa4ea15</code></a>
Merge pull request <a
href="https://redirect.github.com/phonopy/phonopy/issues/449">#449</a>
from phonopy/pre-commit-ci-update-config</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/f2c29ca6871488818ca433f0f1e3f5b476eef83b"><code>f2c29ca</code></a>
[pre-commit.ci] pre-commit autoupdate</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/51ff056f0ca2b0b328d5da8a039cf967d50bddb6"><code>51ff056</code></a>
Minor update of display log</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/643b864e505ca6462f1883c91de7e2282d89e187"><code>643b864</code></a>
Merge pull request <a
href="https://redirect.github.com/phonopy/phonopy/issues/448">#448</a>
from phonopy/clean-phonopy-load</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/2be1176cdf3bd512f69ce91c87a8d71901989622"><code>2be1176</code></a>
Bump requires-python &gt;=3.9</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/a259232566d4ac84e3e73d8c749b421a67e1d296"><code>a259232</code></a>
Refactor phonopy-load command and document</li>
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---
 tests/requirements-phonons.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-phonons.txt b/tests/requirements-phonons.txt
index 037797dd51..89770f322a 100644
--- a/tests/requirements-phonons.txt
+++ b/tests/requirements-phonons.txt
@@ -1,2 +1,2 @@
-phonopy==2.30.0
+phonopy==2.30.1
 seekpath==2.1.0

From 538f7e66d0879da765fc0fd820e634a55845fd34 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 25 Nov 2024 18:25:17 -0500
Subject: [PATCH 16/22] Bump jobflow from 0.1.18 to 0.1.19 (#2551)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
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Bumps [jobflow](https://github.com/materialsproject/jobflow) from 0.1.18
to 0.1.19.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/materialsproject/jobflow/releases">jobflow's
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<blockquote>
<h2>v0.1.19</h2>
<h3>Bug Fixes 🐛</h3>
<ul>
<li>fix <a href="https://github.com/job"><code>@​job</code></a>
annotation again (again) by <a
href="https://github.com/FabiPi3"><code>@​FabiPi3</code></a> in <a
href="https://redirect.github.com/materialsproject/jobflow/pull/654">materialsproject/jobflow#654</a></li>
</ul>
<h3>Enhancements 🛠</h3>
<ul>
<li><code>JobflowSettings</code> add <code>LOG_FORMAT</code>, also
directly passable to <code>run_locally</code> by <a
href="https://github.com/janosh"><code>@​janosh</code></a> in <a
href="https://redirect.github.com/materialsproject/jobflow/pull/706">materialsproject/jobflow#706</a></li>
<li>Add <code>Flow.metadata</code> attribute and
<code>Flow.update_metadata</code> method by <a
href="https://github.com/janosh"><code>@​janosh</code></a> in <a
href="https://redirect.github.com/materialsproject/jobflow/pull/679">materialsproject/jobflow#679</a></li>
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<h3>Documentation 📖</h3>
<ul>
<li>Fix docstring in Job. by <a
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in <a
href="https://redirect.github.com/materialsproject/jobflow/pull/673">materialsproject/jobflow#673</a></li>
</ul>
<h3>House-Keeping 🧹</h3>
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<li>Update commit hooks and fix new <code>ruff</code> and
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href="https://github.com/janosh"><code>@​janosh</code></a> in <a
href="https://redirect.github.com/materialsproject/jobflow/pull/685">materialsproject/jobflow#685</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/materialsproject/jobflow/compare/v0.1.18...v0.1.19">https://github.com/materialsproject/jobflow/compare/v0.1.18...v0.1.19</a></p>
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/materialsproject/jobflow/blob/main/CHANGELOG.md">jobflow's
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<blockquote>
<h2>v0.1.19</h2>
<h3>Bug Fixes 🐛</h3>
<ul>
<li>fix <a href="https://github.com/job"><code>@​job</code></a>
annotation again (again) by <a
href="https://github.com/FabiPi3"><code>@​FabiPi3</code></a> in <a
href="https://redirect.github.com/materialsproject/jobflow/pull/654">materialsproject/jobflow#654</a></li>
</ul>
<h3>Enhancements 🛠</h3>
<ul>
<li><code>JobflowSettings</code> add <code>LOG_FORMAT</code>, also
directly passable to <code>run_locally</code> by <a
href="https://github.com/janosh"><code>@​janosh</code></a> in <a
href="https://redirect.github.com/materialsproject/jobflow/pull/706">materialsproject/jobflow#706</a></li>
<li>Add <code>Flow.metadata</code> attribute and
<code>Flow.update_metadata</code> method by <a
href="https://github.com/janosh"><code>@​janosh</code></a> in <a
href="https://redirect.github.com/materialsproject/jobflow/pull/679">materialsproject/jobflow#679</a></li>
</ul>
<h3>Documentation 📖</h3>
<ul>
<li>Fix docstring in Job. by <a
href="https://github.com/davidwaroquiers"><code>@​davidwaroquiers</code></a>
in <a
href="https://redirect.github.com/materialsproject/jobflow/pull/673">materialsproject/jobflow#673</a></li>
</ul>
<h3>House-Keeping 🧹</h3>
<ul>
<li>Update commit hooks and fix new <code>ruff</code> and
<code>mypy</code> issues by <a
href="https://github.com/janosh"><code>@​janosh</code></a> in <a
href="https://redirect.github.com/materialsproject/jobflow/pull/685">materialsproject/jobflow#685</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/materialsproject/jobflow/compare/v0.1.18...v0.1.19">https://github.com/materialsproject/jobflow/compare/v0.1.18...v0.1.19</a></p>
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<details>
<summary>Commits</summary>
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<li><a
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Update changelog</li>
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Merge pull request <a
href="https://redirect.github.com/materialsproject/jobflow/issues/679">#679</a>
from materialsproject/flow-metadata</li>
<li><a
href="https://github.com/materialsproject/jobflow/commit/b6786caa0b2ccd502972ea9084cf23b7f737e343"><code>b6786ca</code></a>
document metadata + metadata_updates in Flow class doc str</li>
<li><a
href="https://github.com/materialsproject/jobflow/commit/9f16d51c2e673bb04c664ddc3e8e71e9f7cbc3ce"><code>9f16d51</code></a>
cover callback_filter in Flow.update_metadata in combo with
dynamic=True</li>
<li><a
href="https://github.com/materialsproject/jobflow/commit/1993511b9a9ab1eedf1202cd2990335f8163b0fa"><code>1993511</code></a>
delete test_flow_update_metadata_nested_flows</li>
<li><a
href="https://github.com/materialsproject/jobflow/commit/aa4a02f409785dc2dcbe9525a16088d675f416b4"><code>aa4a02f</code></a>
extensive unit tests for Flow and Job update_metadata
callback_filter</li>
<li><a
href="https://github.com/materialsproject/jobflow/commit/dc23d2ef91542e3842d55de6ff8186b532007afc"><code>dc23d2e</code></a>
add keyword callback_filter: Callable[[jobflow.Flow | Job], bool] =
lambda _:...</li>
<li><a
href="https://github.com/materialsproject/jobflow/commit/c374d245424f7aa821c84abf7a51198b16b8699c"><code>c374d24</code></a>
Merge pull request <a
href="https://redirect.github.com/materialsproject/jobflow/issues/673">#673</a>
from davidwaroquiers/fix_Job_docstring</li>
<li><a
href="https://github.com/materialsproject/jobflow/commit/cef358455423a29767bb68d7eac146b705f291f4"><code>cef3584</code></a>
Merge pull request <a
href="https://redirect.github.com/materialsproject/jobflow/issues/706">#706</a>
from materialsproject/custom-log-fmt</li>
<li><a
href="https://github.com/materialsproject/jobflow/commit/ddb53ddc8599ee7b237c6e4cf65bb70de537dd80"><code>ddb53dd</code></a>
initialize_logger test custom log format</li>
<li>Additional commits viewable in <a
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---
 tests/requirements-jobflow.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-jobflow.txt b/tests/requirements-jobflow.txt
index 87f9005461..3fddcf3bdb 100644
--- a/tests/requirements-jobflow.txt
+++ b/tests/requirements-jobflow.txt
@@ -1,3 +1,3 @@
-jobflow==0.1.18
+jobflow==0.1.19
 jobflow-remote==0.1.4
 fireworks==2.0.3

From f79a5935f09815c5aeff5d9e30a967fee25fbaa9 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 25 Nov 2024 18:25:24 -0500
Subject: [PATCH 17/22] Bump covalent-cloud from 0.84.0 to 0.84.1 (#2546)

Bumps [covalent-cloud](https://github.com/AgnostiqHQ/covalent-cloud-sdk)
from 0.84.0 to 0.84.1.
<details>
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---
 tests/requirements-covalent.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-covalent.txt b/tests/requirements-covalent.txt
index ecfba01a42..f82bcc8695 100644
--- a/tests/requirements-covalent.txt
+++ b/tests/requirements-covalent.txt
@@ -1,3 +1,3 @@
 covalent==0.235.1rc0
-covalent-cloud==0.84.0
+covalent-cloud==0.84.1
 covalent-slurm-plugin==0.18.0

From b9cbaec33b5bc4049ded379f31bc16b7dafec3b7 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 25 Nov 2024 18:25:29 -0500
Subject: [PATCH 18/22] Bump prefect[dask] from 3.1.2 to 3.1.4 (#2548)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps [prefect[dask]](https://github.com/PrefectHQ/prefect) from 3.1.2
to 3.1.4.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/PrefectHQ/prefect/releases">prefect[dask]'s
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<li>Omit empty tags in <code>RunnerDeployment</code> by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16075">PrefectHQ/prefect#16075</a></li>
</ul>
<h3>Bug Fixes 🐞</h3>
<ul>
<li>Cast <code>None -&gt; {}</code> in <code>KeyValueLabels</code> by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16067">PrefectHQ/prefect#16067</a></li>
<li>Fix <code>pydantic==2.10</code> compatibility by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16076">PrefectHQ/prefect#16076</a></li>
</ul>
<h3>Integrations &amp; Dependencies 🤝</h3>
<ul>
<li>Update <code>prefect</code> pin to <code>&gt;=3.1.3</code> in
<code>prefect-aws</code> by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16064">PrefectHQ/prefect#16064</a></li>
<li>Update <code>AzureBlobStorageCredentials</code> to close default
credentials when used as a context manager by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16071">PrefectHQ/prefect#16071</a></li>
</ul>
<h3>Development &amp; Tidiness 🧹</h3>
<ul>
<li>New author tutorials by <a
href="https://github.com/daniel-prefect"><code>@​daniel-prefect</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15990">PrefectHQ/prefect#15990</a></li>
<li>Update broken internal links in the docs by <a
href="https://github.com/discdiver"><code>@​discdiver</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16063">PrefectHQ/prefect#16063</a></li>
<li>Remove last remaining links to <code>/docs/3.0</code> by <a
href="https://github.com/daniel-prefect"><code>@​daniel-prefect</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16058">PrefectHQ/prefect#16058</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/PrefectHQ/prefect/compare/3.1.3...3.1.4">https://github.com/PrefectHQ/prefect/compare/3.1.3...3.1.4</a></p>
<h2>Queue The Improvements</h2>
<!-- raw HTML omitted -->
<h2>What's Changed</h2>
<h3>Enhancements ➕➕</h3>
<ul>
<li>helpful error on unhashable parameters by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16049">PrefectHQ/prefect#16049</a></li>
<li>Add <code>new</code> action to <code>OpsGenieWebhook</code> for
<code>apprise==1.9.0</code> compatibility by <a
href="https://github.com/kevingrismore"><code>@​kevingrismore</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16030">PrefectHQ/prefect#16030</a></li>
</ul>
<h3>Bug Fixes 🐞</h3>
<ul>
<li>Adds a dead-letter queue to memory subscriptions to avoid infinite
loops by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16051">PrefectHQ/prefect#16051</a></li>
<li>make sure workers emit stop events by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16002">PrefectHQ/prefect#16002</a></li>
<li>handle UNC paths for windows by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16005">PrefectHQ/prefect#16005</a></li>
<li>fix worker not releasing limit slot on failed propose pending state
by <a href="https://github.com/jdjfisher"><code>@​jdjfisher</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16012">PrefectHQ/prefect#16012</a></li>
<li>refactor: gcp cloud run v2 extend env vars and fix cloud sql by <a
href="https://github.com/matmiad"><code>@​matmiad</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16026">PrefectHQ/prefect#16026</a></li>
<li>Fix env var deep merge order on worker by <a
href="https://github.com/kevingrismore"><code>@​kevingrismore</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16045">PrefectHQ/prefect#16045</a></li>
<li>Prevent workers from running flow runs scheduled for in process
retry by <a
href="https://github.com/desertaxle"><code>@​desertaxle</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15482">PrefectHQ/prefect#15482</a></li>
</ul>
<h3>Integrations &amp; Dependencies 🤝</h3>
<ul>
<li>fix: <code>prefect_redis</code> use of <code>async</code> by <a
href="https://github.com/teocns"><code>@​teocns</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15967">PrefectHQ/prefect#15967</a></li>
<li>Update croniter requirement from <!-- raw HTML omitted
-->=1.0.12,&lt;6.0.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15856">PrefectHQ/prefect#15856</a></li>
<li>Add Flow run OTEL instrumentation by <a
href="https://github.com/collincchoy"><code>@​collincchoy</code></a> in
<a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16010">PrefectHQ/prefect#16010</a></li>
<li>refactor <code>async_dispatch</code> to enable forcing behavior for
instance methods by <a
href="https://github.com/zzstoatzz"><code>@​zzstoatzz</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/15996">PrefectHQ/prefect#15996</a></li>
<li>Bump cross-spawn from 7.0.3 to 7.0.6 in /ui-v2 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16048">PrefectHQ/prefect#16048</a></li>
</ul>
<h3>Development &amp; Tidiness 🧹</h3>
<ul>
<li>Update <code>@​prefecthq/prefect-design</code> to version 2.14.10 by
<a
href="https://github.com/marvin-robot"><code>@​marvin-robot</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16004">PrefectHQ/prefect#16004</a></li>
<li>Fix formatting for output file tree structure in customize.mdx by <a
href="https://github.com/discdiver"><code>@​discdiver</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16006">PrefectHQ/prefect#16006</a></li>
<li>Update <code>@​prefecthq/prefect-design</code> to version 2.14.11 by
<a
href="https://github.com/marvin-robot"><code>@​marvin-robot</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16028">PrefectHQ/prefect#16028</a></li>
<li>Remove experimental worker logs setting by <a
href="https://github.com/abrookins"><code>@​abrookins</code></a> in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16024">PrefectHQ/prefect#16024</a></li>
<li>Update <code>@​prefecthq/prefect-ui-library</code> to version
3.11.19 by <a
href="https://github.com/marvin-robot"><code>@​marvin-robot</code></a>
in <a
href="https://redirect.github.com/PrefectHQ/prefect/pull/16029">PrefectHQ/prefect#16029</a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/78ee41cb26058cc2dfba8aece6a2471ec5ea3675"><code>78ee41c</code></a>
omit empty tags in <code>RunnerDeployment</code> (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/16075">#16075</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/ada7db589c09ff0c46a7c572ef334a66d8551d5e"><code>ada7db5</code></a>
fix pydantic 2.10 compat (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/16076">#16076</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/ad9db0638a4b97a38225206f085a52aa7d5e1e06"><code>ad9db06</code></a>
Remove last remaining links to /docs/3.0 (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/16058">#16058</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/42ea12ae005887d5df3e8c36dcb8eb0831c21312"><code>42ea12a</code></a>
Update <code>AzureBlobStorageCredentials</code> to close default
credentials when used a...</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/a57b324babf8fc25858d5d1d622ea0adf3682ad3"><code>a57b324</code></a>
Update a few internal links in the docs (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/16063">#16063</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/2d3d12f602102a5e738224c77ad379af7bf9e366"><code>2d3d12f</code></a>
cast <code>None -&gt; {}</code> in <code>KeyValueLabels</code> (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/16067">#16067</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/41a40cdb50e3a96a052f90d2a8e236dd0c4a14fc"><code>41a40cd</code></a>
updated <code>async_dispatch</code> requires
<code>prefect&gt;=3.1.3</code> (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/16064">#16064</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/a2c44663bd5da0a17147a06c9fb78a652670a39d"><code>a2c4466</code></a>
New author tutorials (<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/15990">#15990</a>)</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/39b6028cea9f2b0437546ba13cc08bb3bf6d94a4"><code>39b6028</code></a>
Adds a dead-letter queue to memory subscriptions to avoid infinite loops
(<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/16">#16</a>...</li>
<li><a
href="https://github.com/PrefectHQ/prefect/commit/743c4ee82987b01b49e30eb3063b06ddb2b63406"><code>743c4ee</code></a>
migrate <code>prefect_aws.batch</code> off <code>sync_compatible</code>
(<a
href="https://redirect.github.com/PrefectHQ/prefect/issues/16053">#16053</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/PrefectHQ/prefect/compare/3.1.2...3.1.4">compare
view</a></li>
</ul>
</details>
<br />


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You can trigger Dependabot actions by commenting on this PR:
- `@dependabot rebase` will rebase this PR
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---
 tests/requirements-prefect.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-prefect.txt b/tests/requirements-prefect.txt
index 6779ba9298..0c72065734 100644
--- a/tests/requirements-prefect.txt
+++ b/tests/requirements-prefect.txt
@@ -1,2 +1,2 @@
 dask-jobqueue==0.9.0
-prefect[dask]==3.1.2
+prefect[dask]==3.1.4

From ff840f631040d4ebf93c3053bb4185b1483a55f5 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 25 Nov 2024 18:25:36 -0500
Subject: [PATCH 19/22] Bump pydantic from 2.9.2 to 2.10.1 (#2547)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps [pydantic](https://github.com/pydantic/pydantic) from 2.9.2 to
2.10.1.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/pydantic/pydantic/releases">pydantic's
releases</a>.</em></p>
<blockquote>
<h2>v2.10.1 2024-11-21</h2>
<h2>What's Changed</h2>
<h3>Packaging</h3>
<ul>
<li>Bump <code>pydantic-core</code> version to <code>v2.27.1</code> by
<a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10938">#10938</a></li>
</ul>
<h3>Fixes</h3>
<ul>
<li>Use the correct frame when instantiating a parametrized
<code>TypeAdapter</code> by <a
href="https://github.com/Viicos"><code>@​Viicos</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10893">#10893</a></li>
<li>Relax check for validated data in <code>default_factory</code> utils
by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10909">#10909</a></li>
<li>Fix type checking issue with <code>model_fields</code> and
<code>model_computed_fields</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10911">#10911</a></li>
<li>Use the parent configuration during schema generation for stdlib
<code>dataclass</code>es by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10928">#10928</a></li>
<li>Use the <code>globals</code> of the function when evaluating the
return type of serializers and <code>computed_field</code>s by <a
href="https://github.com/Viicos"><code>@​Viicos</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10929">#10929</a></li>
<li>Fix URL constraint application by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10922">#10922</a></li>
<li>Fix URL equality with different validation methods by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10934">#10934</a></li>
<li>Fix JSON schema title when specified as <code>''</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10936">#10936</a></li>
<li>Fix <code>python</code> mode serialization for <code>complex</code>
inference by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic-core/pull/1549">pydantic-core#1549</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/pydantic/pydantic/compare/v2.10.0...v2.10.2">https://github.com/pydantic/pydantic/compare/v2.10.0...v2.10.2</a></p>
<h2>v2.10.0 2024-11-20</h2>
<p>The code released in v2.10.0 is practically identical to that of
v2.10.0b2.
See the <a
href="https://pydantic.dev/articles/pydantic-v2-10-release">v2.10
release blog post</a> for the highlights!</p>
<h2>What's Changed</h2>
<h3>Packaging</h3>
<ul>
<li>Bump <code>pydantic-core</code> to <code>v2.27.0</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10825">#10825</a></li>
<li>Replaced pdm with uv by <a
href="https://github.com/frfahim"><code>@​frfahim</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10727">#10727</a></li>
</ul>
<h3>New Features</h3>
<ul>
<li>Support <code>fractions.Fraction</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10318">#10318</a></li>
<li>Support <code>Hashable</code> for json validation by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10324">#10324</a></li>
<li>Add a <code>SocketPath</code> type for <code>linux</code> systems by
<a href="https://github.com/theunkn0wn1"><code>@​theunkn0wn1</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10378">#10378</a></li>
<li>Allow arbitrary refs in JSON schema <code>examples</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10417">#10417</a></li>
<li>Support <code>defer_build</code> for Pydantic dataclasses by <a
href="https://github.com/Viicos"><code>@​Viicos</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10313">#10313</a></li>
<li>Adding v1 / v2 incompatibility warning for nested v1 model by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10431">#10431</a></li>
<li>Add support for unpacked <code>TypedDict</code> to type hint
variadic keyword arguments with <code>@validate_call</code> by <a
href="https://github.com/Viicos"><code>@​Viicos</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10416">#10416</a></li>
<li>Support compiled patterns in <code>protected_namespaces</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10522">#10522</a></li>
<li>Add support for <code>propertyNames</code> in JSON schema by <a
href="https://github.com/FlorianSW"><code>@​FlorianSW</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10478">#10478</a></li>
<li>Adding <code>__replace__</code> protocol for Python 3.13+ support by
<a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10596">#10596</a></li>
<li>Expose public <code>sort</code> method for JSON schema generation by
<a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10595">#10595</a></li>
<li>Add runtime validation of <code>@validate_call</code> callable
argument by <a
href="https://github.com/kc0506"><code>@​kc0506</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10627">#10627</a></li>
<li>Add <code>experimental_allow_partial</code> support by <a
href="https://github.com/samuelcolvin"><code>@​samuelcolvin</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10748">#10748</a></li>
<li>Support default factories taking validated data as an argument by <a
href="https://github.com/Viicos"><code>@​Viicos</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10678">#10678</a></li>
<li>Allow subclassing <code>ValidationError</code> and
<code>PydanticCustomError</code> by <a
href="https://github.com/Youssefares"><code>@​Youssefares</code></a> in
<a
href="https://redirect.github.com/pydantic/pydantic-core/pull/1413">pydantic/pydantic-core#1413</a></li>
<li>Add <code>trailing-strings</code> support to
<code>experimental_allow_partial</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10825">#10825</a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/pydantic/pydantic/blob/main/HISTORY.md">pydantic's
changelog</a>.</em></p>
<blockquote>
<h2>v2.10.1 (2024-11-21)</h2>
<p><a
href="https://github.com/pydantic/pydantic/releases/tag/v2.10.1">GitHub
release</a></p>
<h3>What's Changed</h3>
<h4>Packaging</h4>
<ul>
<li>Bump <code>pydantic-core</code> version to <code>v2.27.1</code> by
<a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10938">#10938</a></li>
</ul>
<h4>Fixes</h4>
<ul>
<li>Use the correct frame when instantiating a parametrized
<code>TypeAdapter</code> by <a
href="https://github.com/Viicos"><code>@​Viicos</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10893">#10893</a></li>
<li>Relax check for validated data in <code>default_factory</code> utils
by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10909">#10909</a></li>
<li>Fix type checking issue with <code>model_fields</code> and
<code>model_computed_fields</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10911">#10911</a></li>
<li>Use the parent configuration during schema generation for stdlib
<code>dataclass</code>es by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10928">#10928</a></li>
<li>Use the <code>globals</code> of the function when evaluating the
return type of serializers and <code>computed_field</code>s by <a
href="https://github.com/Viicos"><code>@​Viicos</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10929">#10929</a></li>
<li>Fix URL constraint application by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10922">#10922</a></li>
<li>Fix URL equality with different validation methods by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10934">#10934</a></li>
<li>Fix JSON schema title when specified as <code>''</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10936">#10936</a></li>
<li>Fix <code>python</code> mode serialization for <code>complex</code>
inference by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic-core/pull/1549">pydantic-core#1549</a></li>
</ul>
<h3>New Contributors</h3>
<h2>v2.10.0 (2024-11-20)</h2>
<p>The code released in v2.10.0 is practically identical to that of
v2.10.0b2.</p>
<p><a
href="https://github.com/pydantic/pydantic/releases/tag/v2.10.0">GitHub
release</a></p>
<p>See the <a
href="https://pydantic.dev/articles/pydantic-v2-10-release">v2.10
release blog post</a> for the highlights!</p>
<h3>What's Changed</h3>
<h4>Packaging</h4>
<ul>
<li>Bump <code>pydantic-core</code> to <code>v2.27.0</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10825">#10825</a></li>
<li>Replaced pdm with uv by <a
href="https://github.com/frfahim"><code>@​frfahim</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10727">#10727</a></li>
</ul>
<h4>New Features</h4>
<ul>
<li>Support <code>fractions.Fraction</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10318">#10318</a></li>
<li>Support <code>Hashable</code> for json validation by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10324">#10324</a></li>
<li>Add a <code>SocketPath</code> type for <code>linux</code> systems by
<a href="https://github.com/theunkn0wn1"><code>@​theunkn0wn1</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10378">#10378</a></li>
<li>Allow arbitrary refs in JSON schema <code>examples</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10417">#10417</a></li>
<li>Support <code>defer_build</code> for Pydantic dataclasses by <a
href="https://github.com/Viicos"><code>@​Viicos</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10313">#10313</a></li>
<li>Adding v1 / v2 incompatibility warning for nested v1 model by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10431">#10431</a></li>
<li>Add support for unpacked <code>TypedDict</code> to type hint
variadic keyword arguments with <code>@validate_call</code> by <a
href="https://github.com/Viicos"><code>@​Viicos</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10416">#10416</a></li>
<li>Support compiled patterns in <code>protected_namespaces</code> by <a
href="https://github.com/sydney-runkle"><code>@​sydney-runkle</code></a>
in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10522">#10522</a></li>
<li>Add support for <code>propertyNames</code> in JSON schema by <a
href="https://github.com/FlorianSW"><code>@​FlorianSW</code></a> in <a
href="https://redirect.github.com/pydantic/pydantic/pull/10478">#10478</a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/pydantic/pydantic/commit/17e60fafd66133be47352cb0a9b887664b5a6f2d"><code>17e60fa</code></a>
spacing</li>
<li><a
href="https://github.com/pydantic/pydantic/commit/369b355dbafccb4fa9dd080d328f770d56fb0678"><code>369b355</code></a>
remove typo</li>
<li><a
href="https://github.com/pydantic/pydantic/commit/4c75404d6b8faa7dbfe229f11b3bd68fc51b09ca"><code>4c75404</code></a>
Prepare for v2.10.1 release (<a
href="https://redirect.github.com/pydantic/pydantic/issues/10939">#10939</a>)</li>
<li><a
href="https://github.com/pydantic/pydantic/commit/e0fc82fc8bc695559c5e0155adba50802f612002"><code>e0fc82f</code></a>
Bump <code>pydantic-core</code> version to v2.27.1 (<a
href="https://redirect.github.com/pydantic/pydantic/issues/10938">#10938</a>)</li>
<li><a
href="https://github.com/pydantic/pydantic/commit/30b31da7b46b83eb363f211466b9e7bf937cf68f"><code>30b31da</code></a>
Fix JSON schema title when specified as <code>''</code> (<a
href="https://redirect.github.com/pydantic/pydantic/issues/10936">#10936</a>)</li>
<li><a
href="https://github.com/pydantic/pydantic/commit/45bd7a7fcce73969f51e42c8967cfe392f4b44bb"><code>45bd7a7</code></a>
Fix URL equality with different validation methods (<a
href="https://redirect.github.com/pydantic/pydantic/issues/10934">#10934</a>)</li>
<li><a
href="https://github.com/pydantic/pydantic/commit/61530547e3b912b7d711c9f6aa9da5733bf17ac0"><code>6153054</code></a>
Fix url constraint application (<a
href="https://redirect.github.com/pydantic/pydantic/issues/10922">#10922</a>)</li>
<li><a
href="https://github.com/pydantic/pydantic/commit/71168ba54dcdca452b048b3e2759f7bcca66079e"><code>71168ba</code></a>
Use the <code>globals</code> of the function when evaluating the return
type of serializ...</li>
<li><a
href="https://github.com/pydantic/pydantic/commit/4def331d9b91751063593e037c3ea0f2c3e3ba19"><code>4def331</code></a>
Use the parent configuration during schema generation for stdlib
dataclasses ...</li>
<li><a
href="https://github.com/pydantic/pydantic/commit/a2acc52b4e1e4a56281ebec51f0c36bc2850adb3"><code>a2acc52</code></a>
Fix type checking issue with <code>model_fields</code> and
<code>model_computed_fields</code> (<a
href="https://redirect.github.com/pydantic/pydantic/issues/10911">#10911</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/pydantic/pydantic/compare/v2.9.2...v2.10.1">compare
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---
 tests/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements.txt b/tests/requirements.txt
index 13bfd0d7a9..583183e2ed 100644
--- a/tests/requirements.txt
+++ b/tests/requirements.txt
@@ -5,7 +5,7 @@ maggma==0.70.0
 monty==2024.10.21
 numpy==1.26.4
 psutil==6.1.0
-pydantic==2.9.2
+pydantic==2.10.1
 pydantic-settings==2.6.1
 pymatgen==2024.10.3
 ruamel.yaml==0.18.6

From 7eb6921896a46834d9f94d9239bf442b9076ee4b Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 25 Nov 2024 18:25:43 -0500
Subject: [PATCH 20/22] Bump parsl[monitoring] from 2024.11.11 to 2024.11.18
 (#2545)

Bumps [parsl[monitoring]](https://github.com/Parsl/parsl) from
2024.11.11 to 2024.11.18.
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/Parsl/parsl/commit/9fb5269099bec16a66df12f17ad87d9aabccd69d"><code>9fb5269</code></a>
Remove ability to set monitoring log directory separate from rundir (<a
href="https://redirect.github.com/Parsl/parsl/issues/3699">#3699</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/3eb7e932f3054ce911920866746db55599441e22"><code>3eb7e93</code></a>
Make ZMQ, UDP and filesystem monitoring routers send via radios (<a
href="https://redirect.github.com/Parsl/parsl/issues/3700">#3700</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/5cb58d153e402b2dcb972ecfdd849ebe5d94d23e"><code>5cb58d1</code></a>
Adds clusters option for slurm (<a
href="https://redirect.github.com/Parsl/parsl/issues/3694">#3694</a>)</li>
<li><a
href="https://github.com/Parsl/parsl/commit/92ab47fa45c254d400af42ae1336d14208649996"><code>92ab47f</code></a>
Update quickstart example config (<a
href="https://redirect.github.com/Parsl/parsl/issues/3695">#3695</a>)</li>
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---
 tests/requirements-parsl.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-parsl.txt b/tests/requirements-parsl.txt
index b4d5c1ce14..c9dd670c3b 100644
--- a/tests/requirements-parsl.txt
+++ b/tests/requirements-parsl.txt
@@ -1 +1 @@
-parsl[monitoring]==2024.11.11
+parsl[monitoring]==2024.11.18

From f352113ed6dff4a1b3e52e581a90eee5de52e53c Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 25 Nov 2024 18:25:52 -0500
Subject: [PATCH 21/22] Bump phonopy from 2.30.1 to 2.31.0 (#2550)

Bumps [phonopy](https://github.com/phonopy/phonopy) from 2.30.1 to
2.31.0.
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/phonopy/phonopy/blob/develop/doc/changelog.md">phonopy's
changelog</a>.</em></p>
<blockquote>
<h2>Nov-13-2024: Version 2.31.0</h2>
<ul>
<li>Maintenance release along with refactoring of MLP interface.</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/phonopy/phonopy/commit/d7ab2e5ff33e4237c9b0291f5683b853121a24a7"><code>d7ab2e5</code></a>
Merge branch 'develop'</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/fec24de4bbb3a9e93ec4d5df0595f1a248f02616"><code>fec24de</code></a>
Merge pull request <a
href="https://redirect.github.com/phonopy/phonopy/issues/458">#458</a>
from phonopy/release</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/4ba23a3fd834f31193048dfaa8d501aa2dcfae3e"><code>4ba23a3</code></a>
Set version 2.31.0</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/cf27ef5a8c319edb7b724dd58ffa8d5f4b1059aa"><code>cf27ef5</code></a>
Merge pull request <a
href="https://redirect.github.com/phonopy/phonopy/issues/456">#456</a>
from phonopy/mlpsscha</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/98ba7028982c2c0e3d77643c339089a245c825f5"><code>98ba702</code></a>
Add MLPSSCHA class</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/5be99fd2cb3eb87d5c8d1278b1014be826797794"><code>5be99fd</code></a>
Remove legacy setup.py and setup.cfg</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/cfd64ad56b699694cafc43eb999c04008ad29828"><code>cfd64ad</code></a>
Merge pull request <a
href="https://redirect.github.com/phonopy/phonopy/issues/454">#454</a>
from phonopy/remove-init-py</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/91014cebd71cb0815d7867cdfdd34230f740cf9d"><code>91014ce</code></a>
Remove unnecessary <strong>init</strong>.py</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/0bb47c98a1a64a2570a3f182e48904f3baed7a92"><code>0bb47c9</code></a>
Remove sort for another random displacement scheme</li>
<li><a
href="https://github.com/phonopy/phonopy/commit/58451e2777ad63021f787e3cf3f4ab0032cbbc60"><code>58451e2</code></a>
Merge pull request <a
href="https://redirect.github.com/phonopy/phonopy/issues/453">#453</a>
from phonopy/random-disp</li>
<li>Additional commits viewable in <a
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---
 tests/requirements-phonons.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-phonons.txt b/tests/requirements-phonons.txt
index 89770f322a..c0da4b8487 100644
--- a/tests/requirements-phonons.txt
+++ b/tests/requirements-phonons.txt
@@ -1,2 +1,2 @@
-phonopy==2.30.1
+phonopy==2.31.0
 seekpath==2.1.0

From 4696bd8d6caaef685c75cb31caf6a7da4fb0e7d9 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 25 Nov 2024 18:30:47 -0500
Subject: [PATCH 22/22] Bump torch-dftd from 0.5.0 to 0.5.1 (#2549)

Bumps torch-dftd from 0.5.0 to 0.5.1.


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---
 tests/requirements-mlp.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/requirements-mlp.txt b/tests/requirements-mlp.txt
index ff5a7d2095..6f157ccd87 100644
--- a/tests/requirements-mlp.txt
+++ b/tests/requirements-mlp.txt
@@ -1,3 +1,3 @@
 chgnet==0.4.0
 mace-torch==0.3.8
-torch-dftd==0.5.0
+torch-dftd==0.5.1