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ChangeLog
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2007-03-22 author <author@laotse>
* doc/prog-manual.lyx: fixed examples
* @trace/withinPeriod.m: better error messages
* @trace/plotData.m: doc fix
* @tests_db/vertcat.m: fix
* @tests_db/transpose.m: works
* @tests_db/plot_abstract.m: pass props
* @tests_db/addColumns.m, @plot_superpose/plot_superpose.m:
fix for Matlab R2006b
* @physiol_cip_traceset/physiol_cip_traceset.m:
added test property for loading HDF5 files
* @params_tests_fileset/params_tests_fileset.m, @params_tests_fileset/getItemParams.m:
better error messages
* @params_tests_dataset/readDBItems.m:
better error messages and stack trace
* @dataset_db_bundle/reportNeuron.m: better control of traces to choose
* TODO: new things to do
2007-01-24 author <author@laotse>
* doc/func-ref.tex: some initial version, but works fine.
* utils/growRange.m: moved from cen_matlab
* @trace/plot.m: propagates props.
* @tests_db/vertcat.m: modularized checkConsistentCols
* @tests_db/plot_bars.m: bugfix
* @tests_db/plotXRows.m:
calls plotScatter after adding row index column.
* @tests_db/plot.m: passes props
* @tests_db/minus.m: works
* @tests_db/compareRows.m: converted to tail recursion and fixed docs.
* @tests_db/checkConsistentCols.m:
modularized by taking out from vertcat
* @plot_abstract/decorate.m: remade axis tick processing.
* @params_cip_trace_fileset/ctFromRows.m: gets neuronLabel
* @params_tests_dataset/subsasgn.m: works.
* @params_cip_trace_fileset/cip_trace.m:
added neuronLabel prop for specifying a display name for ct.
* @model_ct_bundle/ctFromRows.m, @model_ct_bundle/getNeuronLabel.m, @model_ct_bundle/getNeuronRowIndex.m, @model_ct_bundle/getTrialNum.m:
made sure models are named consistently.
* @histogram_db/plot_abstract.m:
support multidimensional arrays of histogram DBs.
* @histogram_db/plotRowMatrix.m, @dataset_db_bundle/subsasgn.m:
initial version, works.
* @dataset_db_bundle/plotfICurve.m:
Now gets current values from unique values in DB.
2006-12-05 author <author@laotse>
* @params_cip_trace_fileset/ctFromRows.m:
new method to conform to advances in other bundle classes.
* @params_cip_trace_fileset/cip_trace.m:
look for optional parameter instead of trial, if specified. Also bridged the gap to load raw data even though no trial information is provided in fileset.
* @model_ct_bundle/reportRankingToPhysiolNeuronsTeXFile.m: doc fix
* @model_ct_bundle/model_ct_bundle.m:
doc fix and made looking for trial parameter optional.
* @model_ct_bundle/ctFromRows.m, @model_ct_bundle/addToDB.m, @histogram_db/plotPages.m:
doc fix.
* @histogram_db/histogram_db.m: added example
* @histogram_db/calcMode.m: doc fix.
* @dataset_db_bundle/ctFromRows.m: only gives an error when called.
* @cip_trace/measureNames.m:
initial version, helps with picking measures for DBs.
* @params_cip_trace_fileset/set.m, @plot_simple/set.m: generic method.
* @plot_abstract/plot_abstract.m, @physiol_bundle/ctFromRows.m:
updated docs.
* utils/findspikes.m: Alfonso's function modified by CG.
* @tests_db/vertcat.m, @tests_db/testsHists.m: updated docs
* @tests_db/histogram.m: added docs
2006-12-02 author <author@laotse>
* @params_cip_trace_fileset/cip_trace.m:
added using the special trial parameter name
* @params_tests_db/invarParams.m:
added sort command, otherwise it was wrong.
* @tests_db/sortrows.m: entered warning into doc.
* @trace/trace.m: added docs and extensin for .gbin
* @trace/analyzeSpikesInPeriod.m: fixed histogram access to ().
* utils/collectspikes.m: need to include in pandora
2006-11-27 author <author@laotse>
* @params_tests_fileset/paramNames.m:
fixed logic error with trial param.
* @params_tests_fileset/getItemParams.m, @params_tests_fileset/params_tests_fileset.m, @params_tests_fileset/set.m:
patched to load Dieter's simulation data. quick fix to load par files from project files.
2006-11-15 author <author@laotse>
* doc/cip_trace_plot_compact.eps, doc/params_tests_db_plot_param_hists.eps, doc/prog-manual.lyx, doc/tests_db_plot_tests.eps:
added few more plots before lab presentation
2006-10-11 author <author@laotse>
* @cip_trace/calcPulsePotAvg.m, @cip_trace/calcPulsePotSag.m, @cip_trace/calcRecSpontPotAvg.m, @cip_trace/cip_trace.m, @cip_trace/display.m, @cip_trace/get.m, @cip_trace/getBurstResults.m, @cip_trace/getCIPResults.m, @cip_trace/getProfileAllSpikes.m, @cip_trace/getPulseSpike.m, @cip_trace/getRateResults.m, @cip_trace/getRecSpontSpike.m, @cip_trace/getResults.m, @cip_trace/periodIniSpont.m, @cip_trace/periodPulse.m, @cip_trace/periodPulseHalf1.m, @cip_trace/periodPulseIni100ms.m, @cip_trace/periodPulseIni100msRest1.m, @cip_trace/periodPulseIni100msRest2.m, @cip_trace/periodPulseIni50ms.m, @cip_trace/periodPulseIni50msRest1.m, @cip_trace/periodPulseIni50msRest2.m, @cip_trace/periodRecSpont.m, @cip_trace/periodRecSpont1.m, @cip_trace/periodRecSpont2.m, @cip_trace/periodRecSpontIniPeriod.m, @cip_trace/periodRecSpontRestPeriod.m, @cip_trace/set.m, @cip_trace/spikes.m, @cip_trace/subsref.m, @cip_trace_allspikes_profile/cip_trace_allspikes_profile.m, @cip_trace_allspikes_profile/display.m, @cip_trace_allspikes_profile/get.m, @cip_trace_allspikes_profile/plotRowSpontSpikeAnal.m, @cip_trace_allspikes_profile/set.m, @cip_trace_profile/cip_trace_profile.m, @cip_trace_profile/display.m, @cip_trace_profile/get.m, @cip_trace_profile/plot.m, @cip_trace_profile/set.m, @cip_trace_profile/subsref.m, @cip_traces_dataset/cip_trace_profile.m, @cip_traces_dataset/cip_traces_dataset.m, @cip_traces_dataset/display.m, @cip_traces_dataset/get.m, @cip_traces_dataset/getItemParams.m, @cip_traces_dataset/loadItemProfile.m, @cip_traces_dataset/paramNames.m, @cip_traces_dataset/set.m, @cip_traces_dataset/subsref.m, @cip_traceset/cip_trace_profile.m, @cip_traceset/cip_traceset.m, @cip_traceset/display.m, @cip_traceset/get.m, @cip_traceset/getItemParams.m, @cip_traceset/loadItemProfile.m, @cip_traceset/paramNames.m, @cip_traceset_dataset/cip_traceset_dataset.m, @cip_traceset_dataset/display.m, @cip_traceset_dataset/get.m, @cip_traceset_dataset/loadItemProfile.m, @cip_traceset_dataset/readDBItems.m, @cluster_db/cluster_db.m, @cluster_db/display.m, @cluster_db/get.m, @cluster_db/plotHist.m, @cluster_db/plotQuality.m, @cluster_db/plot_abstract.m, @corrcoefs_db/corrcoefs_db.m, @dataset_db_bundle/constrainedMeasuresPreset.m, @dataset_db_bundle/dataset_db_bundle.m, @dataset_db_bundle/display.m, @dataset_db_bundle/get.m, @dataset_db_bundle/getNeuronRowIndex.m, @dataset_db_bundle/matchingRow.m, @dataset_db_bundle/plotfICurve.m, @dataset_db_bundle/rankingReportTeX.m, @dataset_db_bundle/reportNeuron.m, @dataset_db_bundle/set.m, @dataset_db_bundle/subsref.m, @doc_generate/display.m, @doc_generate/doc_generate.m, @doc_generate/get.m, @doc_generate/getTeXString.m, @doc_generate/printTeXFile.m, @doc_generate/set.m, @doc_multi/doc_multi.m, @doc_multi/get.m, @doc_multi/getTeXString.m, @doc_multi/set.m, @doc_plot/doc_plot.m, @doc_plot/get.m, @doc_plot/getTeXString.m, @doc_plot/plot.m, @doc_plot/set.m, @histogram_db/calcMode.m, @histogram_db/get.m, @histogram_db/histogram_db.m, @histogram_db/plotEqSpaced.m, @histogram_db/plotPages.m, @histogram_db/plot_abstract.m, @model_ct_bundle/addToDB.m, @model_ct_bundle/collectPhysiolMatches.m, @model_ct_bundle/ctFromRows.m, @model_ct_bundle/get.m, @model_ct_bundle/getNeuronLabel.m, @model_ct_bundle/getNeuronRowIndex.m, @model_ct_bundle/model_ct_bundle.m, @model_ct_bundle/plotCompareRanks.m, @model_ct_bundle/plotComparefICurve.m, @model_ct_bundle/rankMatching.m, @model_ct_bundle/reportCompareModelToPhysiolNeuron.m, @model_ct_bundle/reportRankingToPhysiolNeuronsTeXFile.m, @model_ct_bundle/set.m, @model_ranked_to_physiol_bundle/comparisonReport.m, @model_ranked_to_physiol_bundle/model_ranked_to_physiol_bundle.m, @model_ranked_to_physiol_bundle/plotCompareRanks.m, @model_ranked_to_physiol_bundle/plotfICurve.m, @params_cip_trace_fileset/cip_trace.m, @params_cip_trace_fileset/cip_trace_profile.m, @params_cip_trace_fileset/display.m, @params_cip_trace_fileset/get.m, @params_cip_trace_fileset/loadItemProfile.m, @params_cip_trace_fileset/params_cip_trace_fileset.m, @params_tests_dataset/addItem.m, @params_tests_dataset/display.m, @params_tests_dataset/get.m, @params_tests_dataset/getItem.m, @params_tests_dataset/getItemParams.m, @params_tests_dataset/itemResultsRow.m, @params_tests_dataset/params_tests_dataset.m, @params_tests_dataset/params_tests_db.m, TAGS, TODO, @params_tests_dataset/readDBItems.m, @params_tests_dataset/set.m, @params_tests_dataset/testNames.m, @params_tests_db/addParams.m, @params_tests_db/crossProd.m, @params_tests_db/delColumns.m, @params_tests_db/display.m, @params_tests_db/displayRankingsTeX.m, @params_tests_db/get.m, @params_tests_db/getDualCIPdb.m, @params_tests_db/getParamRowIndices.m, @params_tests_db/getProfile.m, @params_tests_db/invarParam.m, @params_tests_db/invarParams.m, @params_tests_db/joinRows.m, @params_tests_db/makeGenesisParFile.m, @params_tests_db/matchingRow.m, @params_tests_db/mergeMultipleCIPsInOne.m, @params_tests_db/onlyRowsTests.m, @params_tests_db/paramsCoefs.m, @params_tests_db/paramsHists.m, @params_tests_db/paramsParamsCoefs.m, @params_tests_db/paramsTestsCoefsHists.m, @params_tests_db/params_tests_db.m, @params_tests_db/plotParamsHists.m, @params_tests_db/plotVarBoxMatrix.m, @params_tests_db/rankVsAllDB.m, @params_tests_db/rankVsDB.m, @params_tests_db/scaleParamsOneRow.m, @params_tests_db/scanParamAllRows.m, @params_tests_db/set.m, @params_tests_db/testsHists.m, @params_tests_fileset/addFiles.m, @params_tests_fileset/display.m, @params_tests_fileset/get.m, @params_tests_fileset/getItemParams.m, @params_tests_fileset/loadItemProfile.m, @params_tests_fileset/paramNames.m, @params_tests_fileset/params_tests_fileset.m, @params_tests_fileset/trace.m, @params_tests_fileset/trace_profile.m, @params_tests_profile/get.m, @params_tests_profile/params_tests_profile.m, @period/SpikeTimesinPeriod.m, @period/display.m, @period/get.m, @period/period.m, @period/set.m, @physiol_bundle/constrainedMeasuresPreset.m, @physiol_bundle/ctFromRows.m, @physiol_bundle/get.m, @physiol_bundle/getNeuronLabel.m, @physiol_bundle/getNeuronRowIndex.m, @physiol_bundle/matchingControlNeuron.m, @physiol_bundle/matchingRow.m, @physiol_bundle/physiol_bundle.m, @physiol_bundle/plotfICurveStats.m, @physiol_bundle/set.m, @physiol_cip_traceset/CIPform.m, @physiol_cip_traceset/cip_trace.m, @physiol_cip_traceset/cip_trace_profile.m, @physiol_cip_traceset/get.m, @physiol_cip_traceset/getItemParams.m, @physiol_cip_traceset/itemResultsRow.m, @physiol_cip_traceset/loadItemProfile.m, @physiol_cip_traceset/paramNames.m, @physiol_cip_traceset/physiol_cip_traceset.m, @physiol_cip_traceset/set.m, @physiol_cip_traceset/setProp.m, @physiol_cip_traceset_fileset/cip_trace.m, @physiol_cip_traceset_fileset/display.m, @physiol_cip_traceset_fileset/get.m, @physiol_cip_traceset_fileset/loadItemProfile.m, @physiol_cip_traceset_fileset/physiol_cip_traceset_fileset.m, @physiol_cip_traceset_fileset/readDBItems.m, @physiol_cip_traceset_fileset/set.m, @physiol_cip_traceset_fileset/setProp.m, @plot_abstract/axis.m, @plot_abstract/decorate.m, @plot_abstract/display.m, @plot_abstract/get.m, @plot_abstract/matrixPlots.m, @plot_abstract/openAxis.m, @plot_abstract/plot.m, @plot_abstract/plotFigure.m, @plot_abstract/plot_abstract.m, @plot_abstract/set.m, @plot_abstract/setProp.m, @plot_abstract/subsasgn.m, @plot_abstract/superposePlots.m, @plot_bars/plot_bars.m, @plot_bars/set.m, @plot_errorbar/axis.m, @plot_errorbar/get.m, @plot_errorbar/plot_errorbar.m, @plot_errorbars/plot_errorbars.m, @plot_simple/get.m, @plot_simple/plot_simple.m, @plot_stack/decorate.m, @plot_stack/display.m, @plot_stack/get.m, @plot_stack/plot.m, @plot_stack/plot_stack.m, @plot_stack/set.m, @plot_stack/superposePlots.m, @plot_superpose/axis.m, @plot_superpose/decorate.m, @plot_superpose/display.m, @plot_superpose/get.m, @plot_superpose/plot.m, @plot_superpose/plot_superpose.m, @plot_superpose/set.m, @plot_superpose/superposePlots.m, @ranked_db/blockedDistances.m, @ranked_db/displayRows.m, @ranked_db/get.m, @ranked_db/getDistMatrix.m, @ranked_db/joinOriginal.m, @ranked_db/plotCompareDistMatx.m, @ranked_db/plotDistMatrix.m, @ranked_db/plotRowErrors.m, @ranked_db/ranked_db.m, @ranked_db/renameColumns.m, @ranked_db/set.m, @results_profile/display.m, @results_profile/get.m, @results_profile/getResults.m, @results_profile/plot.m, @results_profile/results_profile.m, @script_array/get.m, @script_array/runFirst.m, @script_array/runJob.m, @script_array/runLast.m, @script_array/script_array.m, @script_array/set.m, @script_array/subsasgn.m, @script_array/subsref.m, @script_array_for_cluster/get.m, @script_array_for_cluster/runFirst.m, @script_array_for_cluster/script_array_for_cluster.m, @script_array_for_cluster/set.m, @script_factory/get.m, @script_factory/script_factory.m, @spike_shape/calcInitVm.m, @spike_shape/calcInitVmLtdMaxCurv.m, @spike_shape/calcInitVmMaxCurvPhasePlane.m, @spike_shape/calcInitVmMaxCurvature.m, @spike_shape/calcInitVmSekerliV2.m, @spike_shape/calcInitVmSlopeThreshold.m, @spike_shape/calcInitVmSlopeThresholdSupsample.m, @spike_shape/calcInitVmV2PPLocal.m, @spike_shape/calcInitVmV3hKpTinterp.m, @spike_shape/calcMaxVm.m, @spike_shape/calcMinVm.m, @spike_shape/calcWidthFall.m, @spike_shape/display.m, @spike_shape/get.m, @spike_shape/getResults.m, @spike_shape/plotCompareMethods.m, @spike_shape/plotCompareMethodsSimple.m, @spike_shape/plotPP.m, @spike_shape/plotResults.m, @spike_shape/plotTPP.m, @spike_shape/set.m, @spike_shape/spike_shape.m, @spike_shape_profile/get.m, @spike_shape_profile/plot_abstract.m, @spike_shape_profile/spike_shape_profile.m, @spikes/ISICV.m, @spikes/SFA.m, @spikes/addSpikes.m, @spikes/display.m, @spikes/get.m, @spikes/getISIs.m, @spikes/getResults.m, @spikes/intoPeriod.m, @spikes/periodWhole.m, @spikes/plot.m, @spikes/plotData.m, @spikes/plotFreqVsTime.m, @spikes/plotISIs.m, @spikes/set.m, @spikes/spikeAmpSlope.m, @spikes/spikeRate.m, @spikes/spikeRateISI.m, @spikes/spikes.m, @spikes/subsref.m, @spikes/vertcat.m, @spikes/withinPeriod.m, @spikes/withinPeriodWOffset.m, @spikes_db/plot_abstract.m, @spikes_db/spikes_db.m, @stats_db/compareStats.m, @stats_db/get.m, @stats_db/onlyRowsTests.m, @stats_db/plotColorVar.m, @stats_db/plotVar.m, @stats_db/plotVarMatrix.m, @stats_db/plotYTests.m, @stats_db/plot_abstract.m, @stats_db/plot_bars.m, @stats_db/set.m, @stats_db/stats_db.m, @tests_3D_db/diff2D.m, @tests_3D_db/display.m, @tests_3D_db/get.m, @tests_3D_db/histograms.m, @tests_3D_db/joinPages.m, @tests_3D_db/mergePages.m, @tests_3D_db/paramsTestsHistsStats.m, @tests_3D_db/plotParamPairImage.m, @tests_3D_db/plotVarBox.m, @tests_3D_db/set.m, @tests_3D_db/swapRowsPages.m, @tests_3D_db/tests_3D_db.m, @tests_db/addColumns.m, @tests_db/addLastRow.m, @tests_db/addRow.m, @tests_db/allocateRows.m, @tests_db/assignRowsTests.m, @tests_db/compareRows.m, @tests_db/corrCoefs.m, @tests_db/crossProd.m, @tests_db/dbsize.m, @tests_db/delColumns.m, @tests_db/diff.m, @tests_db/display.m, @tests_db/displayRows.m, @tests_db/displayRowsTeX.m, @tests_db/end.m, @tests_db/enumerateColumns.m, @tests_db/eq.m, @tests_db/factoran.m, @tests_db/ge.m, @tests_db/get.m, @tests_db/getColNames.m, @tests_db/gt.m, @tests_db/histogram.m, @tests_db/invarValues.m, @tests_db/isinf.m, @tests_db/isnan.m, @tests_db/isnanrows.m, @tests_db/joinRows.m, @tests_db/kmeansCluster.m, @tests_db/le.m, @tests_db/lt.m, @tests_db/matchingRow.m, @tests_db/mean.m, @tests_db/meanDuplicateRows.m, @tests_db/mtimes.m, @tests_db/ne.m, @tests_db/noNaNRows.m, @tests_db/onlyRowsTests.m, @tests_db/plot.m, @tests_db/plotScatter.m, @tests_db/plotTestsHistsMatrix.m, @tests_db/plotYTests.m, @tests_db/plot_abstract.m, @tests_db/plot_bars.m, @tests_db/plotrow.m, @tests_db/plotrows.m, @tests_db/princomp.m, @tests_db/rankMatching.m, @tests_db/renameColumns.m, @tests_db/rows2Struct.m, @tests_db/set.m, @tests_db/setProp.m, @tests_db/setRows.m, @tests_db/shufflerows.m, @tests_db/sortrows.m, @tests_db/statsAll.m, @tests_db/statsBounds.m, @tests_db/statsMeanSE.m, @tests_db/statsMeanStd.m, @tests_db/std.m, @tests_db/subsasgn.m, @tests_db/subsref.m, @tests_db/sum.m, @tests_db/tests2cols.m, @tests_db/testsHists.m, @tests_db/tests_db.m, @tests_db/times.m, @tests_db/vertcat.m, @trace/analyzeSpikesInPeriod.m, @trace/calcAvg.m, @trace/calcMax.m, @trace/calcMin.m, @trace/display.m, @trace/findFilteredSpikes.m, @trace/get.m, @trace/getDy.m, @trace/getResults.m, @trace/getSpike.m, @trace/periodWhole.m, @trace/plot.m, @trace/plotData.m, @trace/set.m, @trace/setProp.m, @trace/spike_shape.m, @trace/spikes.m, @trace/subsref.m, @trace/trace.m, @trace/withinPeriod.m, @trace_profile/get.m, @trace_profile/trace_profile.m, utils/colormapBlueCrossRed.m, utils/plotImage.m:
Did global search-replace for changing help comment fields to conform with new autodoc-parger-generator.
* Contents.m: updated some comments.
* utils/readNeuronVecBin.m: Initial version.
* doc/scratch:
added search-replace regexps for multi-line fixes in help documentation.
* doc/prog-manual.lyx:
adapted to generating HTML reports while still keeping PDF and PS generation capabilities. Has function index.
* doc/generate_func_pages.pl: imrpoved and added author lines.
2006-09-21 author <author@laotse>
* doc/generate_func_pages.pl, doc/prog-manual.lyx:
Better layout for function reference pages.
* doc/DB-classes.eps, doc/Dataset-classes.eps, doc/Profile-classes.eps, doc/Profiles.eps, doc/bundle-classes.eps, doc/data-wrapper-diagram.eps, doc/generate_func_pages.pl, doc/plot-classes.eps, doc/plots.eps, doc/prog-manual.lyx:
Updating documentation. Automatic script works, but needs imrpovement.
2006-08-31 author <author@laotse>
* utils/plotImage.m: works.
* @trace/getSpike.m: has only one usage now.
* @trace/get.m: works on arrays.
* @trace/display.m: improved.
* @tests_db/times.m: works.
* @tests_db/testsHists.m: use arrays instead of cells.
* @tests_db/std.m: mean and std now returns DBs.
* @tests_db/statsBounds.m, @tests_db/statsMeanSE.m, @tests_db/statsMeanStd.m, @tests_db/statsAll.m:
fixed the way mean and std is used.
* @tests_db/mtimes.m: works.
* @tests_db/meanDuplicateRows.m: fixed the way mean and std is used.
* @tests_db/mean.m: improved.
* @tests_db/matchingRow.m: fix.
* @tests_db/enumerateColumns.m: added prop for truncating digits.
* @tests_db/end.m: works.
* @tests_db/assignRowsTests.m: fixed doc
* @tests_db/allocateRows.m: fixed doc, logic and bugs.
* @tests_3D_db/plotParamPairImage.m: works.
* @stats_db/plotVarMatrix.m: added rotateYLabel prop.
* @spikes/plotFreqVsTime.m:
added new default manhattan block method of plotting freq w/o any artifacts.
* @spikes/display.m: improved.
* @spike_shape/spike_shape.m: fixed doc.
* @spike_shape/plotResults.m: work on array of objects.
* @spike_shape/display.m: improved display method.
* @ranked_db/plotRowErrors.m:
added a rowSteps prop for skip labeling some rows.
* @plot_superpose/superposePlots.m: works.
* @plot_superpose/plot_superpose.m:
improved the way superposition works to call superposePlots method of object if possible.
* @plot_stack/superposePlots.m: improved the way superposition works.
* @plot_stack/set.m: modernized method.
* @plot_stack/plot.m: simple fix for empty plots.
* @plot_bars/set.m: fixed to correct parent class.
* @plot_bars/plot_bars.m: removed + from errorbars.
* @plot_abstract/superposePlots.m: improved.
* @plot_abstract/setProp.m: simplified.
* @plot_abstract/plot_abstract.m:
introduce doc for ColorOrder and resizeControl props.
* @plot_abstract/plotFigure.m:
set resize and position properties accordingly with new resizeControl prop.
* @plot_abstract/plot.m: line style and color order properties set.
* @plot_abstract/openAxis.m: allow four components in border argument.
* @plot_abstract/matrixPlots.m:
doc update, made verbosity controlled by matlab switch.
* @physiol_bundle/plotfICurveStats.m: works.
* @physiol_bundle/ctFromRows.m: added control of traes to include.
* @params_tests_db/testsHists.m: doc fix and rename of variable.
* @params_tests_db/rankVsDB.m: changed the mean function to use.
* @params_tests_db/paramsCoefs.m, @params_tests_db/paramsParamsCoefs.m:
use array instead of cell.
* @params_tests_db/invarParams.m: return array instead of cell.
* @params_tests_db/invarParam.m: minor.
* @doc_plot/get.m, @doc_multi/get.m: accepts arrays.
* @dataset_db_bundle/reportNeuron.m:
Several additions of presets and range options for better control of output.
* @cip_trace/getPulseSpike.m: better handling of optional arguments.
* @cip_trace/get.m: accepts arrays
* @cip_trace/display.m: fixed
* TAGS, TODO: updated
2006-06-15 author <author@laotse>
* @dataset_db_bundle/reportNeuron.m:
Added options for axis limits for all four types of plots, and used relative size property of plot_stack for nicer organization in layout 5.
* @plot_stack/plot.m, @plot_stack/plot_stack.m:
Added option to specify relative sizes of plot_stack components.
* @plot_stack/superposePlots.m: Incredibly, it works.
* @plot_abstract/subsasgn.m: Relaxed assignment checks.
2006-06-14 author <author@laotse>
* @dataset_db_bundle/reportNeuron.m: Minor quick fixes.
* @trace/trace.m: Removed neuroSAGE from supported datat types list.
* @tests_db/enumerateColumns.m:
Enumerates columns, for example to replace parameter values with levels.
* @spikes/plotFreqVsTime.m: Fixed bug with handling no spikes.
* @params_tests_db/matchingRow.m:
OVerloaded matchingRow for handling params specially.
* @params_tests_db/params_tests_db.m: Made error message more verbose.
* @doc_plot/getTeXString.m, @doc_plot/plot.m:
Added a generic plot command.
* @dataset_db_bundle/plotfICurve.m: minor fix.
* @dataset_db_bundle/constrainedMeasuresPreset.m, @physiol_bundle/constrainedMeasuresPreset.m:
Generalized to be used from all dataset_db_bundles.
2006-06-13 author <author@laotse>
* @trace/trace.m: Added .gbin support, and updated docs.
2006-06-09 author <author@laotse>
* @dataset_db_bundle/dataset_db_bundle.m, @dataset_db_bundle/getNeuronRowIndex.m, @model_ct_bundle/getNeuronRowIndex.m, @physiol_bundle/getNeuronRowIndex.m:
Added polymorphic method to return neuron index from bundles.
* @spike_shape/plotResults.m: Added passing props to plot_abstract.
* @model_ct_bundle/getNeuronRowIndex.m: Works.
* @dataset_db_bundle/plotfICurve.m, @dataset_db_bundle/reportNeuron.m:
Organized, and added new layouts to reportNeuron.
* @trace/plotData.m: Added props for time scale on plot.
* @tests_db/renameColumns.m: Doc update, added example.
* @tests_db/plot_bars.m: Doc update, added xlabels to plot_bars.
* @tests_db/getColNames.m, @tests_db/diff.m: Doc update.
* @tests_3D_db/display.m, @stats_db/subsref.m:
Added support for vector inputs.
* @stats_db/plot_bars.m: Minor, but fatal fix.
* @spikes/plotFreqVsTime.m:
Added prop for changing the timeScale on the plot.
* @ranked_db/renameColumns.m:
Overload method to keep many DBs included consistent.
* @ranked_db/plotRowErrors.m:
Added custom title and fixed font size logic.
* @ranked_db/plotDistMatrix.m: Minor doc fix.
* @plot_stack/plot_stack.m:
Moved some of the logic of not displaying ticks or sparing space to plot_abstract/openAxis. So no need to explicitly specify no tick marks and confuse layout algorithms here.
* @plot_stack/display.m: Minor fix.
* @plot_bars/plot_bars.m: Allow truncating digits on display.
* @plot_stack/plot.m:
Now passes label placement control commands to child instances of plot_stack. Needed to separate the openAxis method in plot_abstract for this.
* @plot_abstract/openAxis.m, @plot_abstract/plot.m:
Moved functionality to open axis to outside of plot.
* @params_tests_db/subsref.m: Added handling for vector inputs.
* @params_tests_db/plotParamsHists.m: Added props and quiet behavior.
* @params_tests_db/invarParams.m, @params_tests_db/paramsTestsHistsStats.m, @params_tests_db/plotVarMatrix.m, @stats_db/plotColorVar.m, @stats_db/plotVarMatrix.m, @tests_3D_db/paramsTestsHistsStats.m:
Changed the analysis of params_tests_db to yield arrays rather than cell arrays. Therefore util method working on these structures moved to appropriate classes; e.g., tests_3D_db, and stats_db.
* @tests_db/sum.m, utils/colormapBlueCrossRed.m:
Initial version, works.
* @params_tests_db/plotVarMatrix.m: Added limit digits on plot display.
* @model_ct_bundle/reportCompareModelToPhysiolNeuron.m, @model_ct_bundle/reportRankingToPhysiolNeuronsTeXFile.m:
minor fixes for changes elsewhere.
* @model_ct_bundle/getNeuronLabel.m:
Missing label for model neurons implemented.
* @doc_generate/set.m, @doc_multi/set.m, @doc_plot/set.m, @plot_bars/set.m, @ranked_db/set.m:
Generic methods.
* @dataset_db_bundle/reportNeuron.m:
Added rudimentary reportLayout, but also organized new props propagation.
2006-05-26 author <author@laotse>
* @plot_abstract/display.m, @plot_abstract/plot.m, @plot_abstract/plotFigure.m, @plot_stack/display.m, TAGS:
Fixed docs, debugging and a bug that caused too much space on plot_stack inits.
* @tests_3D_db/getDiffDB.m: Renamed to diff2D.m
* TODO: Update.
* @tests_db/getColNames.m: Initial version, works.
* @tests_3D_db/diff2D.m, @tests_db/diff.m:
Convenience methods added for diffing 2D/3D DBs.
* @stats_db/plot_bars.m:
Added col_labels and fixed negative error bars.
* @plot_stack/plot.m:
Fixed bug with plot_stack forcing diabled labels in child plots.
* @plot_bars/plot_bars.m:
Added x_labels as parameter, cleaned class def.
* @plot_abstract/plot_abstract.m: Doc update.
* @plot_abstract/axis.m:
Special addition for counting errorbar extents.
* @params_tests_db/plotVarMatrix.m: Doc update
* @params_tests_db/paramsTestsHistsStats.m:
Added diffing 3D DBs as an option.
* @cip_trace/display.m: Fixed bug
2006-05-23 author <author@laotse>
* @tests_db/delColumns.m: Enabled for 3D DBs.
* @tests_3D_db/getDiffDB.m: Return DB of diffed columns. Works.
* @stats_db/plot_bars.m:
Added optional pageVariable to take page-representative values from a test.
* @stats_db/get.m, @stats_db/onlyRowsTests.m, @stats_db/set.m:
Added generic methods to bridge problems.
* @plot_superpose/plot.m:
Fixed problem with layout_axis argument interpretation.
* @plot_superpose/axis.m: Initial version, works.
* @plot_stack/plot.m:
Made title apparition dependent on title positioning props.
* @plot_bars/plot_bars.m:
Added a groupValues prop to specify bar XTickLabels within a group. Fixed doc.
* @plot_abstract/plot_abstract.m:
Added default parameters for convenience of not specifying any.
* @plot_abstract/plot.m:
Fixed interaction with plot_superpose broken after latest fix to plot_stack
* @params_tests_db/plotVarMatrix.m:
Added option to use plot_bars in addition to plotVar.
* @histogram_db/plotPages.m: Fixed doc.
* @cip_trace/getPulseSpike.m, @trace/getSpike.m:
Added simpler usages for convenience.
2006-05-18 author <author@laotse>
* @params_tests_db/plotVarMatrix.m: Minor fix.
* doc/plotVarBoxMatrix_example.eps, doc/prog-manual.lyx:
Added an example for plotVarMatrix
* @plot_stack/plot.m: Fixed minor verbosity issues.
* @plot_abstract/plotFigure.m:
All position calculations left to plot_abstract/plot.m
* @params_tests_db/plotVarMatrix.m:
Fixed bug with putting x-labels on wrong plot_stack, and used tight plot limits.
2006-05-17 author <author@laotse>
* @plot_abstract/plot.m, @plot_abstract/plotFigure.m, @plot_abstract/plot_abstract.m, @plot_stack/plot.m, @plot_stack/plot_stack.m:
Changed way plot_stacks are generated. Delegated all single plot work to plot_abstract, and kept only handling of plot_stack specific props in plot_stack. Recognizes the verbose flag to produce debug output.
* @params_tests_db/plotVarMatrix.m:
Fixed bug with mixing horiz_props with global props.
2006-05-15 author <author@laotse>
* update_tags: Initial version, works.
* @trace/findFilteredSpikes.m:
Added error check if prepended buffers exceed the trace length and give a more sensible error message to the user.
2006-05-12 author <author@laotse>
* ChangeLog, TODO: New docs.
* doc/prog-manual.lyx: Minor addition.
* @trace/analyzeSpikesInPeriod.m: Fixed doc.
* @tests_db/plot_bars.m: Initial version, works.
* @tests_db/invarValues.m, @stats_db/plot_bars.m: Fixed doc.
* @stats_db/plotYTests.m, @stats_db/plotVar.m:
Updated to uppercase version of stats_db abbreviations.
* @spikes/plotFreqVsTime.m: Initial version, works.
* @spike_shape_profile/spike_shape_profile.m: Fixed doc.
* @spike_shape/plotResults.m:
Fixed doc, added a optioanl title parameter.
* @plot_stack/plot.m: Repositioned title.
* @plot_bars/plot_bars.m: Made displaying N values optional.
* @plot_abstract/superposePlots.m: Added special case for single plot.
* @plot_abstract/subsref.m: Improved indexing operator.
* @plot_abstract/setProp.m, @tests_db/setProp.m:
Fixed bug that appeared when more than one pair of props are given.
* @physiol_bundle/getNeuronLabel.m: Simple initial version.
* @params_tests_db/plotVarMatrix.m:
Added optional parameters, but no specific option. Got title from stats_sb directly.
* @params_tests_db/paramsTestsHistsStats.m:
Allowed choosing appropriate stats_db.
* @model_ct_bundle/reportCompareModelToPhysiolNeuron.m:
Polished to initial get paper figures. Still has way to go.
* @dataset_db_bundle/reportNeuron.m:
Initial version, simple trace+spike shape reports possible.
* @dataset_db_bundle/dataset_db_bundle.m: updated doc.
* TAGS: updated
2006-03-14 Cengiz Gunay <[email protected]>
* @script_array_for_cluster/runFirst.m: Minor fix.
2006-03-13 Cengiz Gunay <[email protected]>
* doc/plot_stats_abstract.eps, doc/plot_stats_bars_multi.eps, doc/plot_stats_bars_single.eps, doc/prog-manual.lyx:
Added section on stats_db visualization.
* @tests_db/statsMeanSE.m, @tests_db/statsMeanStd.m:
Made STD and SE uppercase consistently everywhere.
* @tests_db/rankMatching.m: Ignore Infs as well as NaNs.
* @stats_db/plot_abstract.m, @stats_db/plot_bars.m:
Made STD and SE uppercase consistently everywhere.
* @stats_db/compareStats.m: Updated doc.
* @ranked_db/plotCompareDistMatx.m, @ranked_db/plotDistMatrix.m, @ranked_db/getDistMatrix.m:
Added functions to visualize and quantify 2D landscape changes in or between two parameter databases.
* @ranked_db/plotRowErrors.m: Adjusted border and changed font scaling.
* @ranked_db/blockedDistances.m:
Updated doc, but not used anymore anyway.
* @plot_stack/plot.m:
Transferred most border calculations to the plot_abstract class. Still some mistakes exist that make the first in a stack shrink.
* @plot_superpose/display.m, @plot_superpose/plot_superpose.m, @plot_superpose/decorate.m:
Moved props to base class.
* @plot_stack/set.m: Fixed bug.
* @plot_bars/plot_bars.m, @plot_errorbar/plot_errorbar.m, @plot_errorbars/plot_errorbars.m, @plot_simple/plot_simple.m, @plot_stack/display.m, @plot_stack/plot_stack.m:
Moved props to base class. This is hopefully the last place I need to do this.
* @plot_abstract/superposePlots.m: Prop name change.
* @plot_abstract/subsasgn.m: Works.
* @plot_abstract/plot.m, @plot_abstract/plotFigure.m:
Changed the way plotFigure allocated spaces. Now everything is allocated in plot_abstract/plot.m. It is totally based on current figure normalized size/points ratio.
* @plot_abstract/decorate.m, @plot_abstract/plot_abstract.m:
Carried the noLegends prop here from superposePlots. Still exists in the former location, though.
* @physiol_bundle/constrainedMeasuresPreset.m:
Removed all spontanous spike measures. Now more tolerant to non-spont-firing cases, but loses changes between spont and pulse periods.
* @params_tests_db/scanParamAllRows.m:
Now allows external function for scaling of parameter values. NAmely a log-scale can be applied using logLevels.
* @params_tests_db/getBlockedParamRows.m:
Replaced with scanParamAllRows and scaleParamsOneRow. makeModifiedParamDB is still pending.
* @params_tests_db/displayRankingsTeX.m, @model_ranked_to_physiol_bundle/plotCompareRanks.m:
Prop name change.
* @model_ct_bundle/rankMatching.m:
Fixed conflicting contents. Still probably not used. Only exists for conveninence.
* @model_ct_bundle/plotComparefICurve.m: Improved presentation.
* @model_ct_bundle/reportCompareModelToPhysiolNeuron.m:
Prop name change and major change to allow all-in-one-row type representation for comparing a model with a neuron.
* @dataset_db_bundle/rankingReportTeX.m, @model_ct_bundle/plotCompareRanks.m:
Prop name change.
2006-02-27 Cengiz Gunay <[email protected]>
* @trace/trace.m:
Fixed transposition of matrix coming from readgenesis16bit.
* @spike_shape/calcInitVm.m: Added warning.
* @spike_shape/calcInitVmMaxCurvPhasePlane.m:
Fixed subtle bug in finding distinct points before interpolating phase-plane trajectory.
* @script_array_for_cluster/runFirst.m:
Added quoting for spce-including file names.
* @params_tests_dataset/readDBItems.m, @physiol_cip_traceset_fileset/readDBItems.m:
Removed Java-based print statements due to suspect in causing hangs in cluster nodes.
* TAGS: List of files in this project. To be used from Emacs.
2006-02-20 Cengiz Gunay <[email protected]>
* @tests_db/renameColumns.m: Added for in-place renaming of columns.
* @tests_db/addColumns.m:
Throws identifiable error when columns to be added already exist.
* @params_tests_db/scanParamAllRows.m, @params_tests_db/scaleParamsOneRow.m:
Added new methods to generate parameter sequences scanning ranges or modifying existing parameter values by percentage.
* @params_tests_db/makeGenesisParFile.m:
Added optional property to add a counting trial parameter to the file.
* @params_tests_db/getParamRowIndices.m: Doc update.
2006-02-15 Cengiz Gunay <[email protected]>
* @tests_db/compareRows.m: Fixed major bug with array matches.
* ChangeLog, Contents.m, README, TODO:
Updated documentation and labeled for version 0.9b.
* @tests_db/rankMatching.m:
Added prop to specify to only keep a top portion of the best matching ranks. Therefore the sorting is also done here rather than in constructor of ranked_db.
* @tests_db/onlyRowsTests.m: Minor check added.
* @tests_db/subsasgn.m, @tests_db/assignRowsTests.m:
Addressed modification of DB contents now possible.
* @ranked_db/ranked_db.m:
Sorting not done here anymore. See rankMatching?
* @ranked_db/plotRowErrors.m: Put a limit to font resizing.
* @plot_abstract/plot_abstract.m:
Legend location and orientation props.
* @plot_abstract/plotFigure.m:
Found missing semicolon causing unwanted messages.
* @plot_abstract/decorate.m:
Added props for controlling location and orientation of figure legends.
* @physiol_bundle/constrainedMeasuresPreset.m:
Added minimal set of measures as presets 5 and 6.
* @physiol_bundle/matchingRow.m:
Now returns a crit_db rather than a crit_bundle. Unnecessary bundling needs to be avoided for memory reasons.
* @model_ranked_to_physiol_bundle/comparisonReport.m, @model_ranked_to_physiol_bundle/model_ranked_to_physiol_bundle.m, @model_ranked_to_physiol_bundle/plotCompareRanks.m, @model_ranked_to_physiol_bundle/plotfICurve.m:
OBSOLETE, because putting a copy of the model_ct_bundle bundle in here duplicates the memory required for the huge data matrix. Methods moved out to model_ct_bundle.
* @model_ct_bundle/addToDB.m, @model_ct_bundle/plotCompareRanks.m, @model_ct_bundle/plotComparefICurve.m, @model_ct_bundle/rankMatching.m, @model_ct_bundle/reportRankingToPhysiolNeuronsTeXFile.m:
Adding to existing DB and more memory-optimized version of generating rankings now work. Obsoleted the model_ranked_to_physiol_bundle class. Those methods are now in this model_ct_bundle class.
2006-02-08 Cengiz Gunay <[email protected]>
* @model_ct_bundle/addToDB.m: Initial version, not tested.
* @cip_trace/getBurstResults.m: No change.
2006-02-07 Cengiz Gunay <[email protected]>
* @spike_shape/calcInitVmLtdMaxCurv.m, @spike_shape/calcInitVmSekerliV2.m, @spike_shape/calcInitVmSlopeThreshold.m, @spike_shape/calcInitVmSlopeThresholdSupsample.m, @spike_shape/calcInitVmV3hKpTinterp.m:
Shameful fixes that came too late after removing props from spike_shape.
* @script_array_for_cluster/script_array_for_cluster.m: Doc update.
* @script_array_for_cluster/runFirst.m:
Fixed bunch of bugs. Now works and submits jobs to SGE.
* @script_array_for_cluster/set.m, @script_array/set.m, @script_array/subsasgn.m:
Getting and setting member variables works.
* @params_tests_fileset/params_tests_fileset.m: Doc update.
* @params_tests_fileset/addFiles.m:
Allowed passing the updated parameter file.
* @params_tests_dataset/readDBItems.m, @params_tests_dataset/testNames.m, @params_tests_fileset/paramNames.m:
Load the first in a set of items rather than the absolute first when looking for parameter and test names.
2006-02-03 Cengiz Gunay <[email protected]>
* @params_tests_fileset/addFiles.m, @params_tests_fileset/params_tests_fileset.m:
Fixed documentation and now allows adding files to existing fileset.
2006-02-02 Cengiz Gunay <[email protected]>
* @script_array/get.m, @script_array/subsref.m: Generic methods.
* @script_array_for_cluster/get.m, @script_array_for_cluster/runFirst.m, @script_array_for_cluster/script_array_for_cluster.m:
Initial version, compiles but not thoroughly tested. Committed to be tested on cluster.
* @script_array/runFirst.m, @script_array/runJob.m, @script_array/runLast.m, @script_array/script_array.m:
Initial version, works.
2006-02-01 Cengiz Gunay <[email protected]>
* ChangeLog: Doc auto-update.
* @trace/trace.m: Added .genflac support.
* @trace/plotData.m: Fixed legend.
* @tests_db/rankMatching.m: Added weighing of measures.
* @tests_db/plotYTests.m: Initial version, works.
* @tests_db/addLastRow.m: Fixed coumentation.
* @stats_db/plotYTests.m:
Initial version copied from test_db/plotYTests. Works.
* @spikes/get.m: Generic method.
* @ranked_db/joinOriginal.m: Documentation update.
* @plot_superpose/decorate.m, @plot_superpose/plot.m, @plot_superpose/plot_superpose.m:
Modified to use cell arrays instead of regular array, because regular array does not accept mixed subclasses. Also keps more info at plot_superpose class, rather than getting decorations from the first given plot.
2006-01-31 Cengiz Gunay <[email protected]>
* @physiol_bundle/set.m: Generic method.
* @physiol_bundle/physiol_bundle.m: Updated doc.
* @physiol_bundle/matchingRow.m: Vectorized function.
* @physiol_bundle/matchingControlNeuron.m: Updated doc.
* @physiol_bundle/constrainedMeasuresPreset.m, @model_ranked_to_physiol_bundle/plotfICurve.m:
Initial version, works.
* @model_ranked_to_physiol_bundle/plotCompareRanks.m:
Return more in plots struct.
* @model_ranked_to_physiol_bundle/comparisonReport.m:
Started modularizing, and uniformalized filenames. Also minimized filenames. Still need to call the reportCompareModelToPhysiolNeuron from here?
* @model_ct_bundle/reportCompareModelToPhysiolNeuron.m, @model_ct_bundle/reportRankingToPhysiolNeuronsTeXFile.m:
Working version, but needs improvement.
* @model_ct_bundle/rankMatching.m: Updated doc.
* @model_ct_bundle/collectPhysiolMatches.m: INitial version, works.
* @doc_generate/printTeXFile.m: Imrpoved to handle extension checks.
* @dataset_db_bundle/display.m: Generic display method.
* @cip_trace/getPulseSpike.m: No change.
* @cip_trace/getCIPResults.m:
Changed definition of pulse min time to count from beginning of pulse.
2006-01-27 sangrey <sangrey@laotse>
* @period/SpikeTimesinPeriod.m:
added a @spikes method that calulates spiketimes in an arbitrary period
2006-01-26 sangrey <sangrey@laotse>
* @spike_shape/calcInitVmMaxCurvPhasePlane.m, @spike_shape/getResults.m:
fixed bunch of bugs with spike_shape.props
2006-01-26 Cengiz Gunay <[email protected]>
* @spike_shape/calcInitVm.m: Fixed forgotten conflict remark.
* @spike_shape/calcInitVm.m:
Fixed bugs arising from removing props from spike_shape.
2006-01-26 sangrey <sangrey@laotse>
* @spike_shape/calcInitVm.m:
fixed bug in accessing removed props from spike_shape
* @cip_trace/periodRecSpontIniPeriod.m, @cip_trace/periodRecSpontRestPeriod.m:
added method periodRecSpontRestPeriod.m
* @cip_trace/periodRecSpontIniPeriod.m:
added a new method periodRecSpontIniPeriod.m
* @cip_trace/getBurstResults.m, @cip_trace/getResults.m:
aadded getBurstResults.m and put a call to that function in getRateResults.m
2006-01-24 Cengiz Gunay <[email protected]>
* @spike_shape/display.m, @spike_shape/spike_shape.m:
Removed props from subclass spike_shape. It should only exist in base class.
2006-01-23 sangrey <sangrey@laotse>
* @physiol_cip_traceset_fileset/physiol_cip_traceset_fileset.m:
allowed comments in cell file
2006-01-18 Cengiz Gunay <[email protected]>
* doc/prog-manual.lyx: New acronym and minor changes.
* @plot_abstract/subsref.m: Bugfix.
* @physiol_bundle/matchingRow.m:
Now returns a crit_bundle. No need to supply both crit_db and crit_bundle anymore.
* @model_ranked_to_physiol_bundle/comparisonReport.m, @model_ranked_to_physiol_bundle/model_ranked_to_physiol_bundle.m, @model_ranked_to_physiol_bundle/plotCompareRanks.m:
Initial version, works.
* @model_ct_bundle/rankMatching.m:
Initial version, works. Returns a model_ranked_to_physiol_bundle to do the comparison.
* @doc_generate/display.m, @doc_generate/doc_generate.m, @doc_generate/get.m, @doc_generate/getTeXString.m, @doc_generate/printTeXFile.m, @doc_generate/subsref.m, @doc_multi/doc_multi.m, @doc_multi/get.m, @doc_multi/getTeXString.m, @doc_plot/doc_plot.m, @doc_plot/get.m, @doc_plot/getTeXString.m:
Initial version of automated document generators. They work.
* @dataset_db_bundle/rankingReportTeX.m:
Obsolete. See model_ranked_to_physiol_bundle/comparisonReport.
2006-01-13 Cengiz Gunay <[email protected]>
* @trace/analyzeSpikesInPeriod.m: Fix for histogram cells.
* @tests_db/rankMatching.m: Optimized for memory usage.
* @ranked_db/plotRowErrors.m:
Improved efficiency and added sanity checks.
* @physiol_cip_traceset_fileset/cip_trace.m:
':' loads all traces, updated docs.
* @physiol_cip_traceset/cip_trace.m:
Showing name of neuron is now optional.
* @params_cip_trace_fileset/cip_trace.m: Updated docs.
* @model_ct_bundle/ctFromRows.m, @model_ct_bundle/get.m, @model_ct_bundle/model_ct_bundle.m, @model_ct_bundle/set.m, @physiol_bundle/ctFromRows.m, @physiol_bundle/get.m, @physiol_bundle/matchingControlNeuron.m, @physiol_bundle/matchingRow.m, @physiol_bundle/physiol_bundle.m, @dataset_db_bundle/dataset_db_bundle.m, @dataset_db_bundle/get.m, @dataset_db_bundle/matchingRow.m, @dataset_db_bundle/rankingReportTeX.m, @dataset_db_bundle/set.m, @dataset_db_bundle/subsref.m:
Added dataset_db_bundle and two subclasses. Works.
2006-01-10 Cengiz Gunay <[email protected]>
* @histogram_db/calcMode.m, @histogram_db/mode.m:
Renamed due to incompat with Matlab R14.3.
2005-12-19 Cengiz Gunay <[email protected]>
* @tests_3D_db/mergePages.m, @tests_db/joinRows.m:
Optimized for memory usage.
* @tests_3D_db/swapRowsPages.m: bugfix!
* @params_tests_db/mergeMultipleCIPsInOne.m: no change
2005-12-17 Cengiz Gunay <[email protected]>
* @tests_db/sortrows.m, @tests_db/invarValues.m:
Optimized for reduced memory and time.
* @tests_3D_db/swapRowsPages.m: Streamlined for reduced memory usage.
* @tests_3D_db/plotVarBox.m: Vectorized input to add many boxplots.
* @ranked_db/plotRowErrors.m: Initial version, works.
* @ranked_db/displayRows.m: Updated documentation.
* @plot_abstract/plot_abstract.m: Added documentation for new YTicks.
* @plot_abstract/plot.m: Now supports calling function handles.
* @plot_abstract/matrixPlots.m:
Now can specify axis limits for horizontal stack plots.
* @plot_abstract/decorate.m: Added optional YTick specification.
* @physiol_cip_traceset_fileset/cip_trace.m, @physiol_cip_traceset/cip_trace.m:
Added feature to create id fields by choosing some parameters. These go on the plot titles.
* @params_tests_db/mergeMultipleCIPsInOne.m:
Optimized to use less memory by removing redundant duplications by calling functions in wrong order.
2005-12-08 Cengiz Gunay <[email protected]>
* @tests_db/testsHists.m: Switched to using cell arrays.
* @tests_db/statsBounds.m: Minor fix and doc update.
* @tests_db/plotTestsHistsMatrix.m:
Special plot for multiple-test, multiple-DB histograms.
* @tests_db/histogram.m:
Use same bins when multiple DBs are scanned for histograms.
* @params_tests_db/testsHists.m:
Changed to handle array of DBs to make sure to create same-looking histograms.
* @params_tests_db/subsref.m:
Major change to allow indexing DB arrays with the '.' operator.
* @tests_db/get.m, @params_tests_db/get.m: Simplified.
* @params_tests_db/displayRankingsTeX.m:
More info on filenames, fixed wrong sentence in doc.
* @params_tests_db/display.m:
Civilized to display info about DB arrays.
2005-12-06 Cengiz Gunay <[email protected]>
* @trace/findFilteredSpikes.m, @trace/getSpike.m, @spike_shape/getResults.m:
Relaxed spike width and frequency requirements, since models can fire much faster with new morphologies.
* @spike_shape/calcWidthFall.m:
Fixed AHP calculation, and fall time calc. is more robust now.
* @spike_shape/calcInitVmSlopeThresholdSupsample.m:
Fixed bug to ignore artifactual ditches at spike peak.
2005-11-30 Cengiz Gunay <[email protected]>
* @params_tests_dataset/readDBItems.m:
Replaced buggy java printout with matlab-style printout.
* @params_cip_trace_fileset/cip_trace_profile.m:
No change, added commented-out print statements.
2005-11-29 Cengiz Gunay <[email protected]>
* @plot_abstract/get.m: minor fix.
* @script_factory/get.m, @script_factory/script_factory.m:
initial version.
2005-11-22 Cengiz Gunay <[email protected]>
* @tests_db/vertcat.m: Handle special case with one argument.
* @tests_db/rankMatching.m:
Special handling from params_tests_db objects.
* @tests_db/plotTestsHistsMatrix.m:
More controls and beautified display.
* @tests_db/plotScatter.m: Integrated regression analysis.
* @tests_db/mean.m, @tests_db/std.m: ignore inf values, as well.
* @tests_db/matchingRow.m:
work on original DB object, rather than creating a new one. (for preserving params_tests_db objs)
* @tests_db/histogram.m: remove Inf values as well.
* @tests_db/addRow.m: doc update.
* @stats_db/plot_bars.m: fixed col name problems.
* @spikes/spikeAmpSlope.m: no change.
* @spikes/plotISIs.m: new ISI-time plot.
* @spikes/plotData.m: Improved title.
* @spikes/plot.m: new default method.
* @ranked_db/joinOriginal.m: handle params specially in join operation.
* @ranked_db/displayRows.m: added STD column in criterion DB display