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Shifted labels after auto segmentation caused by empty segments #809

Answered by diazandr3s
marianabb asked this question in Q&A

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Hi @marianabb,

Thanks for the detailed comment.
We've been discussing how to sort of standardizing the color for the different segments. Here @lassoan opened an issue in the NGFF repo to see the interest of the community.

For the MONAI Label module we use these colors to represent the different organs: https://github.com/Project-MONAI/MONAILabel/blob/main/plugins/slicer/MONAILabel/MONAILabelLib/labelcolors.py#L1

If an organ is not on the list, it takes a random color: https://github.com/Project-MONAI/MONAILabel/blob/main/plugins/slicer/MONAILabel/MONAILabel.py#L1621 @SachidanandAlle please keep me honest here

My suggestion for having the same color is to follow the same organ names as in …

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@marianabb

@lassoan

lassoan May 30, 2022
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@marianabb

@SachidanandAlle

@marianabb

Answer selected by SachidanandAlle
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