Server error monailabel bring your own data

[ca0884]

Hi guys, I am new to monai and I am trying to run the above model. When I try to start the server I get the following message

[2023-08-26 04:12:36,608] [30092] [MainThread] [INFO] (main:285) - USING:: version = False
[2023-08-26 04:12:36,608] [30092] [MainThread] [INFO] (main:285) - USING:: app = D:\apps\monaibundle
[2023-08-26 04:12:36,609] [30092] [MainThread] [INFO] (main:285) - USING:: studies = D:\opt\toolkit\Task07_Pancreas\imagesTr
[2023-08-26 04:12:36,610] [30092] [MainThread] [INFO] (main:285) - USING:: verbose = INFO
[2023-08-26 04:12:36,611] [30092] [MainThread] [INFO] (main:285) - USING:: conf = [['models', 'pancreas_ct_dints_segmentation']]
[2023-08-26 04:12:36,611] [30092] [MainThread] [INFO] (main:285) - USING:: host = 0.0.0.0
[2023-08-26 04:12:36,612] [30092] [MainThread] [INFO] (main:285) - USING:: port = 8000
[2023-08-26 04:12:36,613] [30092] [MainThread] [INFO] (main:285) - USING:: uvicorn_app = monailabel.app:app
[2023-08-26 04:12:36,614] [30092] [MainThread] [INFO] (main:285) - USING:: ssl_keyfile = None
[2023-08-26 04:12:36,614] [30092] [MainThread] [INFO] (main:285) - USING:: ssl_certfile = None
[2023-08-26 04:12:36,615] [30092] [MainThread] [INFO] (main:285) - USING:: ssl_keyfile_password = None
[2023-08-26 04:12:36,615] [30092] [MainThread] [INFO] (main:285) - USING:: ssl_ca_certs = None
[2023-08-26 04:12:36,616] [30092] [MainThread] [INFO] (main:285) - USING:: workers = None
[2023-08-26 04:12:36,617] [30092] [MainThread] [INFO] (main:285) - USING:: limit_concurrency = None
[2023-08-26 04:12:36,617] [30092] [MainThread] [INFO] (main:285) - USING:: access_log = False
[2023-08-26 04:12:36,618] [30092] [MainThread] [INFO] (main:285) - USING:: root_path = /
[2023-08-26 04:12:36,631] [30092] [MainThread] [INFO] (main:285) - USING:: log_level = info
[2023-08-26 04:12:36,631] [30092] [MainThread] [INFO] (main:285) - USING:: log_config = None
[2023-08-26 04:12:36,633] [30092] [MainThread] [INFO] (main:285) - USING:: dryrun = False
[2023-08-26 04:12:36,644] [30092] [MainThread] [INFO] (main:285) - USING:: action = start_server
[2023-08-26 04:12:36,644] [30092] [MainThread] [INFO] (main:296) -
Allow Origins: ['']
[2023-08-26 04:12:37,390] [30092] [MainThread] [INFO] (uvicorn.error:74) - Started server process [30092]
[2023-08-26 04:12:37,390] [30092] [MainThread] [INFO] (uvicorn.error:48) - Waiting for application startup.
[2023-08-26 04:12:37,390] [30092] [MainThread] [INFO] (monailabel.interfaces.utils.app:37) - Initializing App from: D:\apps\monaibundle; studies: D:\opt\toolkit\Task07_Pancreas\imagesTr; conf: {'models': 'pancreas_ct_dints_segmentation'}
[2023-08-26 04:12:37,441] [30092] [MainThread] [INFO] (monailabel.utils.others.class_utils:57) - Subclass for MONAILabelApp Found: <class 'main.MyApp'>
[2023-08-26 04:12:41,192] [30092] [MainThread] [INFO] (monailabel.utils.others.generic:315) - +++ Adding Bundle from Zoo: pancreas_ct_dints_segmentation => D:\apps\monaibundle\model\pancreas_ct_dints_segmentation
[2023-08-26 04:12:41,192] [30092] [MainThread] [INFO] (monailabel.utils.others.generic:375) - +++ Using Bundle Models: ['pancreas_ct_dints_segmentation']
[2023-08-26 04:12:41,193] [30092] [MainThread] [INFO] (monailabel.interfaces.app:135) - Init Datastore for: D:\opt\toolkit\Task07_Pancreas\imagesTr
[2023-08-26 04:12:41,194] [30092] [MainThread] [INFO] (monailabel.datastore.local:130) - Auto Reload: True; Extensions: ['.nii.gz', '.nii', '.nrrd', '.jpg', '.png', '.tif', '.svs', '*.xml']
[2023-08-26 04:12:41,198] [30092] [MainThread] [INFO] (monailabel.datastore.local:577) - Invalidate count: 0
[2023-08-26 04:12:41,199] [30092] [MainThread] [INFO] (monailabel.datastore.local:151) - Start observing external modifications on datastore (AUTO RELOAD)
2023-08-26 04:12:41.231674 - Length of input patch is recommended to be a multiple of 32.
[2023-08-26 04:12:41,244] [30092] [MainThread] [ERROR] (uvicorn.error:123) - Traceback (most recent call last):
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monai\utils\module.py", line 260, in instantiate
return component(**kwargs)
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monai\networks\nets\dints.py", line 655, in init
super().init(
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monai\networks\nets\dints.py", line 606, in init
arch_code_a = torch.from_numpy(arch_code[0]).to(self.device)
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\torch\cuda_init_.py", line 239, in _lazy_init
raise AssertionError("Torch not compiled with CUDA enabled")
AssertionError: Torch not compiled with CUDA enabled

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monai\bundle\config_item.py", line 292, in instantiate
return instantiate(modname, mode, **args)
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monai\utils\module.py", line 270, in instantiate
raise RuntimeError(
RuntimeError: Failed to instantiate component 'monai.networks.nets.TopologyInstance' with kwargs: {'channel_mul': 1, 'num_blocks': 12, 'num_depths': 4, 'use_downsample': True, 'arch_code': [array([[1., 1., 1., 1., 0., 1., 0., 0., 1., 0.],
[1., 1., 1., 1., 0., 1., 1., 0., 1., 1.],
[1., 1., 1., 1., 0., 0., 1., 1., 1., 0.],
[1., 0., 1., 0., 0., 1., 1., 1., 1., 1.],
[1., 1., 1., 0., 0., 1., 0., 1., 1., 1.],
[1., 1., 1., 1., 0., 0., 1., 0., 1., 1.],
[1., 1., 0., 1., 1., 1., 1., 1., 1., 1.],
[1., 0., 1., 1., 1., 1., 1., 1., 1., 1.],
[1., 1., 1., 1., 0., 0., 1., 1., 1., 1.],
[1., 1., 1., 1., 0., 1., 1., 1., 0., 1.],
[1., 1., 1., 1., 0., 1., 1., 1., 0., 1.],
[1., 1., 1., 1., 1., 0., 0., 1., 1., 1.]]), array([[0, 2, 0, 3, 0, 1, 2, 2, 1, 2],
[2, 3, 0, 2, 0, 1, 1, 0, 1, 0],
[0, 1, 3, 0, 0, 2, 1, 3, 3, 2],
[1, 2, 2, 0, 0, 0, 1, 4, 1, 3],
[3, 3, 3, 2, 0, 1, 0, 1, 0, 1],
[3, 3, 3, 4, 0, 1, 1, 1, 2, 1],
[1, 2, 0, 3, 4, 1, 2, 0, 4, 2],
[1, 0, 1, 0, 3, 3, 3, 0, 1, 1],
[3, 4, 2, 0, 0, 3, 0, 0, 4, 1],
[2, 4, 3, 3, 3, 0, 3, 3, 1, 1],
[3, 0, 1, 2, 2, 3, 3, 3, 4, 2],
[4, 0, 4, 4, 2, 4, 0, 4, 1, 3]], dtype=int64)], 'device': device(type='cuda')}
set 'mode=debug' to enter the debugging mode.

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\starlette\routing.py", line 677, in lifespan
async with self.lifespan_context(app) as maybe_state:
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\starlette\routing.py", line 566, in aenter
await self._router.startup()
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\starlette\routing.py", line 654, in startup
await handler()
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monailabel\app.py", line 108, in startup_event
instance = app_instance()
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monailabel\interfaces\utils\app.py", line 50, in app_instance
app = c(app_dir=app_dir, studies=studies, conf=conf)
File "D:\apps\monaibundle\main.py", line 47, in init
super().init(
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monailabel\interfaces\app.py", line 101, in init
self._infers = self.init_infers()
File "D:\apps\monaibundle\main.py", line 62, in init_infers
i = BundleInferTask(b, self.conf)
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monailabel\tasks\infer\bundle.py", line 118, in init
network = self.bundle_config.get_parsed_content(self.const.key_network_def(), instantiate=True)
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monai\bundle\config_parser.py", line 291, in get_parsed_content
return self.ref_resolver.get_resolved_content(id=id, **kwargs)
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monai\bundle\reference_resolver.py", line 190, in get_resolved_content
return self._resolve_one_item(id=id, **kwargs)
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monai\bundle\reference_resolver.py", line 160, in _resolve_one_item
self._resolve_one_item(id=d, waiting_list=waiting_list, **kwargs)
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monai\bundle\reference_resolver.py", line 168, in _resolve_one_item
self.resolved_content[id] = item.instantiate() if kwargs.get("instantiate", True) else item
File "D:\ProgramData\anaconda3\envs\monai3\lib\site-packages\monai\bundle\config_item.py", line 294, in instantiate
raise RuntimeError(f"Failed to instantiate {self}.") from e
RuntimeError: Failed to instantiate {'target': 'monai.networks.nets.TopologyInstance', 'channel_mul': 1, 'num_blocks': 12, 'num_depths': 4, 'use_downsample': True, 'arch_code': [array([[1., 1., 1., 1., 0., 1., 0., 0., 1., 0.],
[1., 1., 1., 1., 0., 1., 1., 0., 1., 1.],
[1., 1., 1., 1., 0., 0., 1., 1., 1., 0.],
[1., 0., 1., 0., 0., 1., 1., 1., 1., 1.],
[1., 1., 1., 0., 0., 1., 0., 1., 1., 1.],
[1., 1., 1., 1., 0., 0., 1., 0., 1., 1.],
[1., 1., 0., 1., 1., 1., 1., 1., 1., 1.],
[1., 0., 1., 1., 1., 1., 1., 1., 1., 1.],
[1., 1., 1., 1., 0., 0., 1., 1., 1., 1.],
[1., 1., 1., 1., 0., 1., 1., 1., 0., 1.],
[1., 1., 1., 1., 0., 1., 1., 1., 0., 1.],
[1., 1., 1., 1., 1., 0., 0., 1., 1., 1.]]), array([[0, 2, 0, 3, 0, 1, 2, 2, 1, 2],
[2, 3, 0, 2, 0, 1, 1, 0, 1, 0],
[0, 1, 3, 0, 0, 2, 1, 3, 3, 2],
[1, 2, 2, 0, 0, 0, 1, 4, 1, 3],
[3, 3, 3, 2, 0, 1, 0, 1, 0, 1],
[3, 3, 3, 4, 0, 1, 1, 1, 2, 1],
[1, 2, 0, 3, 4, 1, 2, 0, 4, 2],
[1, 0, 1, 0, 3, 3, 3, 0, 1, 1],
[3, 4, 2, 0, 0, 3, 0, 0, 4, 1],
[2, 4, 3, 3, 3, 0, 3, 3, 1, 1],
[3, 0, 1, 2, 2, 3, 3, 3, 4, 2],
[4, 0, 4, 4, 2, 4, 0, 4, 1, 3]], dtype=int64)], 'device': device(type='cuda')}.

[2023-08-26 04:12:41,245] [30092] [MainThread] [ERROR] (uvicorn.error:59) - Application startup failed. Exiting.

Could anyone help please

[diazandr3s]

Hi @ca0884,

From the logs, I see the Torch is not compiled with CUDA. Do you have a GPU on your computer?

raise AssertionError("Torch not compiled with CUDA enabled")
AssertionError: Torch not compiled with CUDA enabled

[ca0884]

Many thanks,

I installed cuda for windows and it worked