requirements.txt

# Copyright (c) MONAI Consortium
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#     http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

monai[nibabel, skimage, pillow, tensorboard, gdown, ignite, torchvision, itk, tqdm, lmdb, psutil, openslide, fire, mlflow]>=1.4.0
uvicorn==0.29.0
pydantic==2.7.0
pydantic-settings==2.2.1
python-dotenv==1.0.1
fastapi==0.110.2
python-multipart==0.0.18
httpx==0.27.0
schedule==1.2.1
dicomweb-client[gcp]==0.59.1
timeloop==1.0.2
expiringdict==1.2.2
expiring_dict==1.1.0
cachetools==5.3.3
watchdog==4.0.0
pydicom==2.4.4
pydicom-seg==0.4.1
pynetdicom==2.0.2
pynrrd==1.0.0
numpymaxflow==0.0.7
girder-client==3.2.3
ninja==1.11.1.1
einops==0.7.0
pyyaml==6.0.1
filelock==3.11.0
passlib==1.7.4
pyjwt==2.8.0
bcrypt==4.1.2
shapely==2.0.4
requests==2.32.2
requests-toolbelt==1.0.0
urllib3==2.2.2
scikit-learn
scipy
google-auth==2.29.0
SAM-2 @ git+https://github.com/facebookresearch/sam2.git@c2ec8e14a185632b0a5d8b161928ceb50197eddc ; python_version >= '3.10'
#sam2>=0.4.1; python_version >= '3.10'

# scipy and scikit-learn latest packages are missing on python 3.8
# sudo apt-get install openslide-tools -y

# How to auto update versions?
# pip install pur
# pur -r requirements.txt