From f14d30eee0267f61a897cd8865dd721a4d6f4460 Mon Sep 17 00:00:00 2001 From: Olivia Angelin-Bonnet Date: Mon, 5 Aug 2024 11:31:26 +1200 Subject: [PATCH] Fixed bug GWASpoly chromosome ordering with limits --- DESCRIPTION | 2 +- NEWS.md | 2 + R/create_hidecan_plot.R | 7 +- renv.lock | 1130 ++++++++++++++++++++++++++------------- 4 files changed, 757 insertions(+), 384 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index cbc28f3..087f28c 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -14,7 +14,7 @@ URL: https://plantandfoodresearch.github.io/hidecan/, https://github.com/Plantan BugReports: https://github.com/PlantandFoodResearch/hidecan/issues Encoding: UTF-8 Roxygen: list(markdown = TRUE) -RoxygenNote: 7.2.3 +RoxygenNote: 7.3.2 Depends: R (>= 2.10) Imports: diff --git a/NEWS.md b/NEWS.md index 8cc19e2..8d31df8 100644 --- a/NEWS.md +++ b/NEWS.md @@ -2,6 +2,8 @@ * Added the `manhattan_plot()` function to generate Manhattan plots from a table of GWAS results. +* Fixed bug where specifying chromosome limits for `hidecan_plot_from_gwaspoly()` would mess up the ordering of the chromosomes in the plot. + # hidecan 1.1.0 * Removed `get_gwaspoly_example_data()` function so that the package doesn't depend on GWASpoly (for CRAN submission) diff --git a/R/create_hidecan_plot.R b/R/create_hidecan_plot.R index 6be90ee..3fbcc7f 100644 --- a/R/create_hidecan_plot.R +++ b/R/create_hidecan_plot.R @@ -187,11 +187,11 @@ create_hidecan_plot <- function(x, ## Now filter both toplot and chrom_lenght to only the desired chromosomes toplot <- toplot |> dplyr::filter(chromosome %in% chroms) |> - dplyr::mutate(chromosome = factor(chromosome, levels = chroms)) + dplyr::mutate(chromosome = factor(chromosome, levels = chroms, ordered = FALSE)) chrom_length <- chrom_length |> dplyr::filter(chromosome %in% chroms) |> - dplyr::mutate(chromosome = factor(chromosome, levels = chroms)) + dplyr::mutate(chromosome = factor(chromosome, levels = chroms, ordered = FALSE)) toplot_chroms <- chrom_length |> dplyr::mutate(position_mb = length / 1e6) |> @@ -231,7 +231,8 @@ create_hidecan_plot <- function(x, ~ tibble::tibble(lower_limit_mb = .x[[1]], upper_limit_mb = .x[[2]]), .id = "chromosome" - ), + ) |> + dplyr::mutate(chromosome = factor(chromosome, levels = chroms)), by = "chromosome" ) |> tidyr::replace_na(list(lower_limit_mb = 0)) |> diff --git a/renv.lock b/renv.lock index 8de4260..3fad80f 100644 --- a/renv.lock +++ b/renv.lock @@ -1,6 +1,6 @@ { "R": { - "Version": "4.2.2", + "Version": "4.4.1", "Repositories": [ { "Name": "CRAN", @@ -11,26 +11,34 @@ "Packages": { "DBI": { "Package": "DBI", - "Version": "1.1.3", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "b2866e62bab9378c3cc9476a1954226b", + "Version": "1.2.3", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "DBI", + "RemoteRef": "DBI", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.2.3", + "Hash": "065ae649b05f1ff66bb0c793107508f5", "Requirements": [] }, "GWASpoly": { "Package": "GWASpoly", - "Version": "2.11", + "Version": "2.13", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", - "RemoteRepo": "GWASpoly", "RemoteUsername": "jendelman", - "RemoteRef": "HEAD", - "RemoteSha": "d296a13c6445169c0c7641757833c856f48c04bb", - "Hash": "f1d969f781c99b76dc4d9ccfc81d8fcb", + "RemoteRepo": "GWASpoly", + "RemoteRef": "master", + "RemoteSha": "c8c80a5ec5c08b4f9dc48840cab0aa02d046b1ad", + "Hash": "b5c8403cc1ef528bcadd5a51b90d6038", "Requirements": [ "Matrix", "ggplot2", + "randomForest", "rlang", "rrBLUP", "scam", @@ -39,18 +47,18 @@ }, "MASS": { "Package": "MASS", - "Version": "7.3-58.1", + "Version": "7.3-60.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "762e1804143a332333c054759f89a706", + "Hash": "2f342c46163b0b54d7b64d1f798e2c78", "Requirements": [] }, "Matrix": { "Package": "Matrix", - "Version": "1.5-3", + "Version": "1.7-0", "Source": "Repository", "Repository": "CRAN", - "Hash": "4006dffe49958d2dd591c17e61e60591", + "Hash": "1920b2f11133b12350024297d8a4ff4a", "Requirements": [ "lattice" ] @@ -66,43 +74,49 @@ "RColorBrewer": { "Package": "RColorBrewer", "Version": "1.1-3", - "Source": "Repository", - "Repository": "CRAN", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "RColorBrewer", + "RemoteRef": "RColorBrewer", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.1-3", "Hash": "45f0398006e83a5b10b72a90663d8d8c", "Requirements": [] }, "Rcpp": { "Package": "Rcpp", - "Version": "1.0.10", + "Version": "1.0.12", "Source": "Repository", "Repository": "CRAN", - "Hash": "e749cae40fa9ef469b6050959517453c", + "Hash": "5ea2700d21e038ace58269ecdbeb9ec0", "Requirements": [] }, "askpass": { "Package": "askpass", - "Version": "1.1", + "Version": "1.2.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "e8a22846fff485f0be3770c2da758713", + "Hash": "cad6cf7f1d5f6e906700b9d3e718c796", "Requirements": [ "sys" ] }, - "assertthat": { - "Package": "assertthat", - "Version": "0.2.1", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "50c838a310445e954bc13f26f26a6ecf", - "Requirements": [] - }, "backports": { "Package": "backports", - "Version": "1.4.1", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "c39fbec8a30d23e721980b8afb31984c", + "Version": "1.5.0", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "backports", + "RemoteRef": "backports", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.5.0", + "Hash": "e1e1b9d75c37401117b636b7ae50827a", "Requirements": [] }, "base64enc": { @@ -133,10 +147,17 @@ }, "blob": { "Package": "blob", - "Version": "1.2.3", - "Source": "Repository", + "Version": "1.2.4", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "10d231579bc9c06ab1c320618808d4ff", + "RemoteType": "standard", + "RemotePkgRef": "blob", + "RemoteRef": "blob", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.2.4", + "Hash": "40415719b5a479b87949f3aa0aee737c", "Requirements": [ "rlang", "vctrs" @@ -144,33 +165,39 @@ }, "brew": { "Package": "brew", - "Version": "1.0-8", + "Version": "1.0-10", "Source": "Repository", "Repository": "CRAN", - "Hash": "d69a786e85775b126bddbee185ae6084", + "Hash": "8f4a384e19dccd8c65356dc096847b76", "Requirements": [] }, "brio": { "Package": "brio", - "Version": "1.1.3", + "Version": "1.1.5", "Source": "Repository", "Repository": "CRAN", - "Hash": "976cf154dfb043c012d87cddd8bca363", + "Hash": "c1ee497a6d999947c2c224ae46799b1a", "Requirements": [] }, "broom": { "Package": "broom", - "Version": "1.0.1", - "Source": "Repository", + "Version": "1.0.6", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "c90ff735b7812b60f067a3f7a3b4de63", + "RemoteType": "standard", + "RemotePkgRef": "broom", + "RemoteRef": "broom", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.0.6", + "Hash": "a4652c36d1f8abfc3ddf4774f768c934", "Requirements": [ "backports", "dplyr", - "ellipsis", "generics", - "ggplot2", "glue", + "lifecycle", "purrr", "rlang", "stringr", @@ -180,26 +207,30 @@ }, "bslib": { "Package": "bslib", - "Version": "0.4.1", + "Version": "0.7.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "89a0cd0c45161e3bd1c1e74a2d65e516", + "Hash": "8644cc53f43828f19133548195d7e59e", "Requirements": [ + "base64enc", "cachem", + "fastmap", "htmltools", "jquerylib", "jsonlite", + "lifecycle", "memoise", + "mime", "rlang", "sass" ] }, "cachem": { "Package": "cachem", - "Version": "1.0.6", + "Version": "1.1.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "648c5b3d71e6a37e3043617489a0a0e9", + "Hash": "cd9a672193789068eb5a2aad65a0dedf", "Requirements": [ "fastmap", "rlang" @@ -207,10 +238,17 @@ }, "callr": { "Package": "callr", - "Version": "3.7.3", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "9b2191ede20fa29828139b9900922e51", + "Version": "3.7.6", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "callr", + "RemoteRef": "callr", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "3.7.6", + "Hash": "d7e13f49c19103ece9e58ad2d83a7354", "Requirements": [ "R6", "processx" @@ -219,8 +257,15 @@ "cellranger": { "Package": "cellranger", "Version": "1.1.0", - "Source": "Repository", - "Repository": "CRAN", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "cellranger", + "RemoteRef": "cellranger", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.1.0", "Hash": "f61dbaec772ccd2e17705c1e872e9e7c", "Requirements": [ "rematch", @@ -229,10 +274,10 @@ }, "cli": { "Package": "cli", - "Version": "3.4.1", + "Version": "3.6.3", "Source": "Repository", "Repository": "CRAN", - "Hash": "0d297d01734d2bcea40197bd4971a764", + "Hash": "b21916dd77a27642b447374a5d30ecf3", "Requirements": [] }, "clipr": { @@ -245,42 +290,68 @@ }, "colorspace": { "Package": "colorspace", - "Version": "2.0-3", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "bb4341986bc8b914f0f0acf2e4a3f2f7", + "Version": "2.1-1", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "colorspace", + "RemoteRef": "colorspace", + "RemoteRepos": "https://cran.rstudio.com", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "2.1-1", + "Hash": "d954cb1c57e8d8b756165d7ba18aa55a", "Requirements": [] }, "commonmark": { "Package": "commonmark", - "Version": "1.8.1", + "Version": "1.9.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "b6e3e947d1d7ebf3d2bdcea1bde63fe7", + "Hash": "5d8225445acb167abf7797de48b2ee3c", "Requirements": [] }, + "conflicted": { + "Package": "conflicted", + "Version": "1.2.0", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "conflicted", + "RemoteRef": "conflicted", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.2.0", + "Hash": "bb097fccb22d156624fd07cd2894ddb6", + "Requirements": [ + "cli", + "memoise", + "rlang" + ] + }, "cpp11": { "Package": "cpp11", - "Version": "0.4.3", + "Version": "0.4.7", "Source": "Repository", "Repository": "CRAN", - "Hash": "ed588261931ee3be2c700d22e94a29ab", + "Hash": "5a295d7d963cc5035284dcdbaf334f4e", "Requirements": [] }, "crayon": { "Package": "crayon", - "Version": "1.5.2", + "Version": "1.5.3", "Source": "Repository", "Repository": "CRAN", - "Hash": "e8a1e41acf02548751f45c718d55aa6a", + "Hash": "859d96e65ef198fd43e82b9628d593ef", "Requirements": [] }, "credentials": { "Package": "credentials", - "Version": "1.3.2", + "Version": "2.0.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "93762d0a34d78e6a025efdbfb5c6bb41", + "Hash": "c7844b32098dcbd1c59cbd8dddb4ecc6", "Requirements": [ "askpass", "curl", @@ -291,30 +362,43 @@ }, "curl": { "Package": "curl", - "Version": "4.3.3", + "Version": "5.2.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "0eb86baa62f06e8855258fa5a8048667", + "Hash": "411ca2c03b1ce5f548345d2fc2685f7a", "Requirements": [] }, "data.table": { "Package": "data.table", - "Version": "1.14.6", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "aecef50008ea7b57c76f1cb5c127fb02", + "Version": "1.15.4", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "data.table", + "RemoteRef": "data.table", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.15.4", + "Hash": "8ee9ac56ef633d0c7cab8b2ca87d683e", "Requirements": [] }, "dbplyr": { "Package": "dbplyr", - "Version": "2.2.1", - "Source": "Repository", + "Version": "2.5.0", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "f6c7eb9617e4d2a86bb7182fff99c805", + "RemoteType": "standard", + "RemotePkgRef": "dbplyr", + "RemoteRef": "dbplyr", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "2.5.0", + "Hash": "39b2e002522bfd258039ee4e889e0fd1", "Requirements": [ "DBI", "R6", - "assertthat", "blob", "cli", "dplyr", @@ -325,6 +409,7 @@ "purrr", "rlang", "tibble", + "tidyr", "tidyselect", "vctrs", "withr" @@ -332,14 +417,13 @@ }, "desc": { "Package": "desc", - "Version": "1.4.2", + "Version": "1.4.3", "Source": "Repository", "Repository": "CRAN", - "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21", + "Hash": "99b79fcbd6c4d1ce087f5c5c758b384f", "Requirements": [ "R6", - "cli", - "rprojroot" + "cli" ] }, "devtools": { @@ -384,18 +468,18 @@ }, "digest": { "Package": "digest", - "Version": "0.6.30", + "Version": "0.6.36", "Source": "Repository", "Repository": "CRAN", - "Hash": "bf1cd206a5d170d132ef75c7537b9bdb", + "Hash": "fd6824ad91ede64151e93af67df6376b", "Requirements": [] }, "downlit": { "Package": "downlit", - "Version": "0.4.2", + "Version": "0.4.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "79bf3f66590752ffbba20f8d2da94c7c", + "Hash": "45a6a596bf0108ee1ff16a040a2df897", "Requirements": [ "brio", "desc", @@ -411,12 +495,20 @@ }, "dplyr": { "Package": "dplyr", - "Version": "1.0.10", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "539412282059f7f0c07295723d23f987", + "Version": "1.1.4", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "dplyr", + "RemoteRef": "dplyr", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.1.4", + "Hash": "fedd9d00c2944ff00a0e2696ccf048ec", "Requirements": [ "R6", + "cli", "generics", "glue", "lifecycle", @@ -430,15 +522,21 @@ }, "dtplyr": { "Package": "dtplyr", - "Version": "1.2.2", - "Source": "Repository", + "Version": "1.3.1", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "c5f8828a0b459a703db190b001ad4818", + "RemoteType": "standard", + "RemotePkgRef": "dtplyr", + "RemoteRef": "dtplyr", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.3.1", + "Hash": "54ed3ea01b11e81a86544faaecfef8e2", "Requirements": [ - "crayon", + "cli", "data.table", "dplyr", - "ellipsis", "glue", "lifecycle", "rlang", @@ -459,42 +557,49 @@ }, "evaluate": { "Package": "evaluate", - "Version": "0.19", + "Version": "0.24.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "5aac3cd0a3ccb1a738941796b28c26fe", + "Hash": "a1066cbc05caee9a4bf6d90f194ff4da", "Requirements": [] }, "fansi": { "Package": "fansi", - "Version": "1.0.3", + "Version": "1.0.6", "Source": "Repository", "Repository": "CRAN", - "Hash": "83a8afdbe71839506baa9f90eebad7ec", + "Hash": "962174cf2aeb5b9eea581522286a911f", "Requirements": [] }, "farver": { "Package": "farver", - "Version": "2.1.1", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "8106d78941f34855c440ddb946b8f7a5", + "Version": "2.1.2", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "farver", + "RemoteRef": "farver", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "2.1.2", + "Hash": "680887028577f3fa2a81e410ed0d6e42", "Requirements": [] }, "fastmap": { "Package": "fastmap", - "Version": "1.1.1", + "Version": "1.2.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "f7736a18de97dea803bde0a2daaafb27", + "Hash": "aa5e1cd11c2d15497494c5292d7ffcc8", "Requirements": [] }, "fontawesome": { "Package": "fontawesome", - "Version": "0.4.0", + "Version": "0.5.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "c5a628c2570aa86a96cc6ef739d8bfda", + "Hash": "c2efdd5f0bcd1ea861c2d4e2a883a67d", "Requirements": [ "htmltools", "rlang" @@ -502,61 +607,81 @@ }, "forcats": { "Package": "forcats", - "Version": "0.5.2", - "Source": "Repository", + "Version": "1.0.0", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "9d95bc88206321cd1bc98480ecfd74bb", + "RemoteType": "standard", + "RemotePkgRef": "forcats", + "RemoteRef": "forcats", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.0.0", + "Hash": "1a0a9a3d5083d0d573c4214576f1e690", "Requirements": [ "cli", - "ellipsis", "glue", "lifecycle", "magrittr", "rlang", - "tibble", - "withr" + "tibble" ] }, "fs": { "Package": "fs", - "Version": "1.5.2", + "Version": "1.6.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "7c89603d81793f0d5486d91ab1fc6f1d", + "Hash": "15aeb8c27f5ea5161f9f6a641fafd93a", "Requirements": [] }, "gargle": { "Package": "gargle", - "Version": "1.2.1", - "Source": "Repository", + "Version": "1.5.2", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "cca71329ad88e21267f09255d3f008c2", + "RemoteType": "standard", + "RemotePkgRef": "gargle", + "RemoteRef": "gargle", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.5.2", + "Hash": "fc0b272e5847c58cd5da9b20eedbd026", "Requirements": [ "cli", "fs", "glue", "httr", "jsonlite", + "lifecycle", + "openssl", "rappdirs", "rlang", - "rstudioapi", "withr" ] }, "generics": { "Package": "generics", "Version": "0.1.3", - "Source": "Repository", - "Repository": "CRAN", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "generics", + "RemoteRef": "generics", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "0.1.3", "Hash": "15e9634c0fcd294799e9b2e929ed1b86", "Requirements": [] }, "gert": { "Package": "gert", - "Version": "1.9.2", + "Version": "2.0.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "9122b3958e749badb5c939f498038b57", + "Hash": "f70d3fe2d9e7654213a946963d1591eb", "Requirements": [ "askpass", "credentials", @@ -568,20 +693,27 @@ }, "ggnewscale": { "Package": "ggnewscale", - "Version": "0.4.8", + "Version": "0.5.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "871327b44b04bfb19dc28f60b96806c1", + "Hash": "0e4714a05e572eacd7c232fde675558e", "Requirements": [ "ggplot2" ] }, "ggplot2": { "Package": "ggplot2", - "Version": "3.4.0", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "fd2aab12f54400c6bca43687231e246b", + "Version": "3.5.1", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "ggplot2", + "RemoteRef": "ggplot2", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "3.5.1", + "Hash": "44c6a2f8202d5b7e878ea274b1092426", "Requirements": [ "MASS", "cli", @@ -599,29 +731,33 @@ }, "ggrepel": { "Package": "ggrepel", - "Version": "0.9.2", + "Version": "0.9.5", "Source": "Repository", "Repository": "CRAN", - "Hash": "610af35a68a1e8a40f05aad45871e719", + "Hash": "cc3361e234c4a5050e29697d675764aa", "Requirements": [ "Rcpp", "ggplot2", "rlang", - "scales" + "scales", + "withr" ] }, "gh": { "Package": "gh", - "Version": "1.3.1", + "Version": "1.4.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "b6a12054ee13dce0f6696c019c10e539", + "Hash": "fbbbc48eba7a6626a08bb365e44b563b", "Requirements": [ "cli", "gitcreds", - "httr", + "glue", + "httr2", "ini", - "jsonlite" + "jsonlite", + "lifecycle", + "rlang" ] }, "gitcreds": { @@ -634,18 +770,25 @@ }, "glue": { "Package": "glue", - "Version": "1.6.2", + "Version": "1.7.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "4f2596dfb05dac67b9dc558e5c6fba2e", + "Hash": "e0b3a53876554bd45879e596cdb10a52", "Requirements": [] }, "googledrive": { "Package": "googledrive", - "Version": "2.0.0", - "Source": "Repository", + "Version": "2.1.1", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "c3a25adbbfbb03f12e6f88c5fb1f3024", + "RemoteType": "standard", + "RemotePkgRef": "googledrive", + "RemoteRef": "googledrive", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "2.1.1", + "Hash": "e99641edef03e2a5e87f0a0b1fcc97f4", "Requirements": [ "cli", "gargle", @@ -665,10 +808,17 @@ }, "googlesheets4": { "Package": "googlesheets4", - "Version": "1.0.1", - "Source": "Repository", + "Version": "1.1.1", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "3b449d5292327880fc6cb61d0b2e9063", + "RemoteType": "standard", + "RemotePkgRef": "googlesheets4", + "RemoteRef": "googlesheets4", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.1.1", + "Hash": "d6db1667059d027da730decdc214b959", "Requirements": [ "cellranger", "cli", @@ -678,12 +828,14 @@ "googledrive", "httr", "ids", + "lifecycle", "magrittr", "purrr", "rematch2", "rlang", "tibble", - "vctrs" + "vctrs", + "withr" ] }, "gridExtra": { @@ -698,18 +850,37 @@ }, "gtable": { "Package": "gtable", - "Version": "0.3.1", - "Source": "Repository", + "Version": "0.3.5", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "36b4265fb818f6a342bed217549cd896", - "Requirements": [] + "RemoteType": "standard", + "RemotePkgRef": "gtable", + "RemoteRef": "gtable", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "0.3.5", + "Hash": "e18861963cbc65a27736e02b3cd3c4a0", + "Requirements": [ + "cli", + "glue", + "lifecycle", + "rlang" + ] }, "haven": { "Package": "haven", - "Version": "2.5.1", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "5b45a553fca2217a07b6f9c843304c44", + "Version": "2.5.4", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "haven", + "RemoteRef": "haven", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "2.5.4", + "Hash": "9171f898db9d9c4c1b2c745adc2c1ef1", "Requirements": [ "cli", "cpp11", @@ -725,22 +896,21 @@ }, "highr": { "Package": "highr", - "Version": "0.9", + "Version": "0.11", "Source": "Repository", "Repository": "CRAN", - "Hash": "8eb36c8125038e648e5d111c0d7b2ed4", + "Hash": "d65ba49117ca223614f71b60d85b8ab7", "Requirements": [ "xfun" ] }, "hms": { "Package": "hms", - "Version": "1.1.2", + "Version": "1.1.3", "Source": "Repository", "Repository": "CRAN", - "Hash": "41100392191e1244b887878b533eea91", + "Hash": "b59377caa7ed00fa41808342002138f9", "Requirements": [ - "ellipsis", "lifecycle", "pkgconfig", "rlang", @@ -749,36 +919,37 @@ }, "htmltools": { "Package": "htmltools", - "Version": "0.5.4", + "Version": "0.5.8.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "9d27e99cc90bd701c0a7a63e5923f9b7", + "Hash": "81d371a9cc60640e74e4ab6ac46dcedc", "Requirements": [ "base64enc", "digest", - "ellipsis", "fastmap", "rlang" ] }, "htmlwidgets": { "Package": "htmlwidgets", - "Version": "1.5.4", + "Version": "1.6.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "76147821cd3fcd8c4b04e1ef0498e7fb", + "Hash": "04291cc45198225444a397606810ac37", "Requirements": [ "htmltools", "jsonlite", + "knitr", + "rmarkdown", "yaml" ] }, "httpuv": { "Package": "httpuv", - "Version": "1.6.6", + "Version": "1.6.15", "Source": "Repository", "Repository": "CRAN", - "Hash": "fd090e236ae2dc0f0cdf33a9ec83afb6", + "Hash": "d55aa087c47a63ead0f6fc10f8fa1ee0", "Requirements": [ "R6", "Rcpp", @@ -788,10 +959,17 @@ }, "httr": { "Package": "httr", - "Version": "1.4.4", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "57557fac46471f0dbbf44705cc6a5c8c", + "Version": "1.4.7", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "httr", + "RemoteRef": "httr", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.4.7", + "Hash": "ac107251d9d9fd72f0ca8049988f1d7f", "Requirements": [ "R6", "curl", @@ -800,11 +978,38 @@ "openssl" ] }, - "ids": { - "Package": "ids", + "httr2": { + "Package": "httr2", "Version": "1.0.1", "Source": "Repository", "Repository": "CRAN", + "Hash": "03d741c92fda96d98c3a3f22494e3b4a", + "Requirements": [ + "R6", + "cli", + "curl", + "glue", + "lifecycle", + "magrittr", + "openssl", + "rappdirs", + "rlang", + "vctrs", + "withr" + ] + }, + "ids": { + "Package": "ids", + "Version": "1.0.1", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "ids", + "RemoteRef": "ids", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.0.1", "Hash": "99df65cfef20e525ed38c3d2577f7190", "Requirements": [ "openssl", @@ -821,10 +1026,17 @@ }, "isoband": { "Package": "isoband", - "Version": "0.2.6", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "cfdea9dea85c1a973991c8cbe299f4da", + "Version": "0.2.7", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "isoband", + "RemoteRef": "isoband", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "0.2.7", + "Hash": "0080607b4a1a7b28979aecef976d8bc2", "Requirements": [] }, "jquerylib": { @@ -839,40 +1051,46 @@ }, "jsonlite": { "Package": "jsonlite", - "Version": "1.8.5", + "Version": "1.8.8", "Source": "Repository", "Repository": "CRAN", - "Hash": "3ee4d9899e4db3e976fc82b98d24a31a", + "Hash": "e1b9c55281c5adc4dd113652d9e26768", "Requirements": [] }, "knitr": { "Package": "knitr", - "Version": "1.41", + "Version": "1.48", "Source": "Repository", "Repository": "CRAN", - "Hash": "6d4971f3610e75220534a1befe81bc92", + "Hash": "acf380f300c721da9fde7df115a5f86f", "Requirements": [ "evaluate", "highr", - "stringr", "xfun", "yaml" ] }, "labeling": { "Package": "labeling", - "Version": "0.4.2", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "3d5108641f47470611a32d0bdf357a72", + "Version": "0.4.3", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "labeling", + "RemoteRef": "labeling", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "0.4.3", + "Hash": "b64ec208ac5bc1852b285f665d6368b3", "Requirements": [] }, "later": { "Package": "later", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "40401c9cf2bc2259dfe83311c9384710", + "Hash": "a3e051d405326b8b0012377434c62b37", "Requirements": [ "Rcpp", "rlang" @@ -880,18 +1098,18 @@ }, "lattice": { "Package": "lattice", - "Version": "0.20-45", + "Version": "0.22-6", "Source": "Repository", "Repository": "CRAN", - "Hash": "b64cdbb2b340437c4ee047a1f4c4377b", + "Hash": "cc5ac1ba4c238c7ca9fa6a87ca11a7e2", "Requirements": [] }, "lifecycle": { "Package": "lifecycle", - "Version": "1.0.3", + "Version": "1.0.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "001cecbeac1cff9301bdc3775ee46a86", + "Hash": "b8552d117e1b808b09a832f589b79035", "Requirements": [ "cli", "glue", @@ -900,10 +1118,17 @@ }, "lubridate": { "Package": "lubridate", - "Version": "1.9.0", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "2af4550c2f0f7fbe7cbbf3dbf4ea3902", + "Version": "1.9.3", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "lubridate", + "RemoteRef": "lubridate", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.9.3", + "Hash": "680ad542fbcf801442c83a6ac5a2126c", "Requirements": [ "generics", "timechange" @@ -930,10 +1155,10 @@ }, "mgcv": { "Package": "mgcv", - "Version": "1.8-41", + "Version": "1.9-1", "Source": "Repository", "Repository": "CRAN", - "Hash": "6b3904f13346742caa3e82dd0303d4ad", + "Hash": "110ee9d83b496279960e162ac97764ce", "Requirements": [ "Matrix", "nlme" @@ -960,10 +1185,17 @@ }, "modelr": { "Package": "modelr", - "Version": "0.1.10", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "bc23cda9c6a8f91dc1c10e1994494711", + "Version": "0.1.11", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "modelr", + "RemoteRef": "modelr", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "0.1.11", + "Hash": "4f50122dc256b1b6996a4703fecea821", "Requirements": [ "broom", "magrittr", @@ -977,40 +1209,47 @@ }, "munsell": { "Package": "munsell", - "Version": "0.5.0", - "Source": "Repository", + "Version": "0.5.1", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "6dfe8bf774944bd5595785e3229d8771", + "RemoteType": "standard", + "RemotePkgRef": "munsell", + "RemoteRef": "munsell", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "0.5.1", + "Hash": "4fd8900853b746af55b81fda99da7695", "Requirements": [ "colorspace" ] }, "nlme": { "Package": "nlme", - "Version": "3.1-160", + "Version": "3.1-164", "Source": "Repository", "Repository": "CRAN", - "Hash": "02e3c6e7df163aafa8477225e6827bc5", + "Hash": "a623a2239e642806158bc4dc3f51565d", "Requirements": [ "lattice" ] }, "openssl": { "Package": "openssl", - "Version": "2.0.5", + "Version": "2.2.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "b04c27110bf367b4daa93f34f3d58e75", + "Hash": "2bcca3848e4734eb3b16103bc9aa4b8e", "Requirements": [ "askpass" ] }, "pillar": { "Package": "pillar", - "Version": "1.8.1", + "Version": "1.9.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "f2316df30902c81729ae9de95ad5a608", + "Hash": "15da5a8412f317beeee6175fbc76f4bb", "Requirements": [ "cli", "fansi", @@ -1023,20 +1262,16 @@ }, "pkgbuild": { "Package": "pkgbuild", - "Version": "1.4.0", + "Version": "1.4.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "d6c3008d79653a0f267703288230105e", + "Hash": "a29e8e134a460a01e0ca67a4763c595b", "Requirements": [ "R6", "callr", "cli", - "crayon", "desc", - "prettyunits", - "processx", - "rprojroot", - "withr" + "processx" ] }, "pkgconfig": { @@ -1049,10 +1284,10 @@ }, "pkgdown": { "Package": "pkgdown", - "Version": "2.0.6", + "Version": "2.1.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "f958d0b2a5dabc5ffd414f062b1ffbe7", + "Hash": "0d3d789055c873f48521ce7e23c23f48", "Requirements": [ "bslib", "callr", @@ -1060,11 +1295,11 @@ "desc", "digest", "downlit", + "fontawesome", "fs", - "httr", + "httr2", "jsonlite", - "magrittr", - "memoise", + "openssl", "purrr", "ragg", "rlang", @@ -1078,16 +1313,18 @@ }, "pkgload": { "Package": "pkgload", - "Version": "1.3.2", + "Version": "1.4.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "6b0c222c5071efe0f3baf3dae9aa40e2", + "Hash": "2ec30ffbeec83da57655b850cf2d3e0e", "Requirements": [ "cli", - "crayon", "desc", "fs", "glue", + "lifecycle", + "pkgbuild", + "processx", "rlang", "rprojroot", "withr" @@ -1103,18 +1340,25 @@ }, "prettyunits": { "Package": "prettyunits", - "Version": "1.1.1", + "Version": "1.2.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "95ef9167b75dde9d2ccc3c7528393e7e", + "Hash": "6b01fc98b1e86c4f705ce9dcfd2f57c7", "Requirements": [] }, "processx": { "Package": "processx", - "Version": "3.8.1", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "d75b4059d781336efba24021915902b4", + "Version": "3.8.4", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "processx", + "RemoteRef": "processx", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "3.8.4", + "Hash": "0c90a7d71988856bad2a2a45dd871bb9", "Requirements": [ "R6", "ps" @@ -1122,21 +1366,24 @@ }, "profvis": { "Package": "profvis", - "Version": "0.3.7", + "Version": "0.3.8", "Source": "Repository", "Repository": "CRAN", - "Hash": "e9d21e79848e02e524bea6f5bd53e7e4", + "Hash": "aa5a3864397ce6ae03458f98618395a1", "Requirements": [ "htmlwidgets", - "stringr" + "purrr", + "rlang", + "stringr", + "vctrs" ] }, "progress": { "Package": "progress", - "Version": "1.2.2", + "Version": "1.2.3", "Source": "Repository", "Repository": "CRAN", - "Hash": "14dc9f7a3c91ebb14ec5bb9208a07061", + "Hash": "f4625e061cb2865f111b47ff163a5ca6", "Requirements": [ "R6", "crayon", @@ -1146,13 +1393,14 @@ }, "promises": { "Package": "promises", - "Version": "1.2.0.1", + "Version": "1.3.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "4ab2c43adb4d4699cf3690acd378d75d", + "Hash": "434cd5388a3979e74be5c219bcd6e77d", "Requirements": [ "R6", "Rcpp", + "fastmap", "later", "magrittr", "rlang" @@ -1160,34 +1408,59 @@ }, "ps": { "Package": "ps", - "Version": "1.7.5", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "709d852d33178db54b17c722e5b1e594", + "Version": "1.7.7", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "ps", + "RemoteRef": "ps", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.7.7", + "Hash": "878b467580097e9c383acbb16adab57a", "Requirements": [] }, "purrr": { "Package": "purrr", - "Version": "0.3.5", + "Version": "1.0.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "54842a2443c76267152eface28d9e90a", + "Hash": "1cba04a4e9414bdefc9dcaa99649a8dc", "Requirements": [ + "cli", + "lifecycle", "magrittr", - "rlang" + "rlang", + "vctrs" ] }, "ragg": { "Package": "ragg", - "Version": "1.2.4", - "Source": "Repository", + "Version": "1.3.2", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "0db17bd5a1d4abfec76487b6f5dd957b", + "RemoteType": "standard", + "RemotePkgRef": "ragg", + "RemoteRef": "ragg", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.3.2", + "Hash": "e3087db406e079a8a2fd87f413918ed3", "Requirements": [ "systemfonts", "textshaping" ] }, + "randomForest": { + "Package": "randomForest", + "Version": "4.7-1.1", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "b52825075358b1ebd159e262bf40649d", + "Requirements": [] + }, "rappdirs": { "Package": "rappdirs", "Version": "0.3.3", @@ -1219,10 +1492,10 @@ }, "readr": { "Package": "readr", - "Version": "2.1.3", + "Version": "2.1.5", "Source": "Repository", "Repository": "CRAN", - "Hash": "2dfbfc673ccb3de3d8836b4b3bd23d14", + "Hash": "9de96463d2117f6ac49980577939dfb3", "Requirements": [ "R6", "cli", @@ -1239,10 +1512,17 @@ }, "readxl": { "Package": "readxl", - "Version": "1.4.1", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "5c1fbc365ac0a3fe7728ac79108b8e64", + "Version": "1.4.3", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "readxl", + "RemoteRef": "readxl", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.4.3", + "Hash": "8cf9c239b96df1bbb133b74aef77ad0a", "Requirements": [ "cellranger", "cpp11", @@ -1252,17 +1532,31 @@ }, "rematch": { "Package": "rematch", - "Version": "1.0.1", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "c66b930d20bb6d858cd18e1cebcfae5c", + "Version": "2.0.0", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "rematch", + "RemoteRef": "rematch", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "2.0.0", + "Hash": "cbff1b666c6fa6d21202f07e2318d4f1", "Requirements": [] }, "rematch2": { "Package": "rematch2", "Version": "2.1.2", - "Source": "Repository", - "Repository": "CRAN", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "rematch2", + "RemoteRef": "rematch2", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "2.1.2", "Hash": "76c9e04c712a05848ae7a23d2f170a40", "Requirements": [ "tibble" @@ -1270,10 +1564,10 @@ }, "remotes": { "Package": "remotes", - "Version": "2.4.2", + "Version": "2.5.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "227045be9aee47e6dda9bb38ac870d67", + "Hash": "3ee025083e66f18db6cf27b56e23e141", "Requirements": [] }, "renv": { @@ -1286,10 +1580,17 @@ }, "reprex": { "Package": "reprex", - "Version": "2.0.2", - "Source": "Repository", + "Version": "2.1.1", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "d66fe009d4c20b7ab1927eb405db9ee2", + "RemoteType": "standard", + "RemotePkgRef": "reprex", + "RemoteRef": "reprex", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "2.1.1", + "Hash": "97b1d5361a24d9fb588db7afe3e5bcbf", "Requirements": [ "callr", "cli", @@ -1306,26 +1607,26 @@ }, "rlang": { "Package": "rlang", - "Version": "1.1.1", + "Version": "1.1.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "a85c767b55f0bf9b7ad16c6d7baee5bb", + "Hash": "3eec01f8b1dee337674b2e34ab1f9bc1", "Requirements": [] }, "rmarkdown": { "Package": "rmarkdown", - "Version": "2.18", + "Version": "2.27", "Source": "Repository", "Repository": "CRAN", - "Hash": "8063c4e953cefb651e8cd58c82c82d2d", + "Hash": "27f9502e1cdbfa195f94e03b0f517484", "Requirements": [ "bslib", "evaluate", + "fontawesome", "htmltools", "jquerylib", "jsonlite", "knitr", - "stringr", "tinytex", "xfun", "yaml" @@ -1333,10 +1634,10 @@ }, "roxygen2": { "Package": "roxygen2", - "Version": "7.2.2", + "Version": "7.3.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "d0dbb227bab26a4b8af658d81bfb6b36", + "Hash": "6ee25f9054a70f44d615300ed531ba8d", "Requirements": [ "R6", "brew", @@ -1344,7 +1645,6 @@ "commonmark", "cpp11", "desc", - "digest", "knitr", "pkgload", "purrr", @@ -1357,26 +1657,26 @@ }, "rprojroot": { "Package": "rprojroot", - "Version": "2.0.3", + "Version": "2.0.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "1de7ab598047a87bba48434ba35d497d", + "Hash": "4c8415e0ec1e29f3f4f6fc108bef0144", "Requirements": [] }, "rrBLUP": { "Package": "rrBLUP", - "Version": "4.6.1", + "Version": "4.6.3", "Source": "Repository", "Repository": "CRAN", - "Hash": "a3e95926d31b1a79c09bd0e39c782ea2", + "Hash": "d320fbf46ac1cf295c7321aaad7425d8", "Requirements": [] }, "rstudioapi": { "Package": "rstudioapi", - "Version": "0.14", + "Version": "0.16.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "690bd2acc42a9166ce34845884459320", + "Hash": "96710351d642b70e8f02ddeb237c46a7", "Requirements": [] }, "rversions": { @@ -1392,10 +1692,17 @@ }, "rvest": { "Package": "rvest", - "Version": "1.0.3", - "Source": "Repository", + "Version": "1.0.4", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "a4a5ac819a467808c60e36e92ddf195e", + "RemoteType": "standard", + "RemotePkgRef": "rvest", + "RemoteRef": "rvest", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.0.4", + "Hash": "0bcf0c6f274e90ea314b812a6d19a519", "Requirements": [ "cli", "glue", @@ -1405,16 +1712,15 @@ "rlang", "selectr", "tibble", - "withr", "xml2" ] }, "sass": { "Package": "sass", - "Version": "0.4.4", + "Version": "0.4.9", "Source": "Repository", "Repository": "CRAN", - "Hash": "c76cbac7ca04ce82d8c38e29729987a3", + "Hash": "d53dbfddf695303ea4ad66f86e99b95d", "Requirements": [ "R6", "fs", @@ -1425,14 +1731,23 @@ }, "scales": { "Package": "scales", - "Version": "1.2.1", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "906cb23d2f1c5680b8ce439b44c6fa63", + "Version": "1.3.0", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "scales", + "RemoteRef": "scales", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.3.0", + "Hash": "c19df082ba346b0ffa6f833e92de34d1", "Requirements": [ "R6", "RColorBrewer", + "cli", "farver", + "glue", "labeling", "lifecycle", "munsell", @@ -1442,10 +1757,10 @@ }, "scam": { "Package": "scam", - "Version": "1.2-13", + "Version": "1.2-17", "Source": "Repository", "Repository": "CRAN", - "Hash": "d244e729ca9feaeeb131723bcee77552", + "Hash": "f42bd2a6b0dfa362b8f267a925bac4db", "Requirements": [ "Matrix", "mgcv" @@ -1454,8 +1769,15 @@ "selectr": { "Package": "selectr", "Version": "0.4-2", - "Source": "Repository", - "Repository": "CRAN", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "selectr", + "RemoteRef": "selectr", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "0.4-2", "Hash": "3838071b66e0c566d55cc26bd6e27bf4", "Requirements": [ "R6", @@ -1474,17 +1796,16 @@ }, "shiny": { "Package": "shiny", - "Version": "1.7.3", + "Version": "1.9.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "fe12df67fdb3b1142325cc54f100cc06", + "Hash": "6a293995a66e12c48d13aa1f957d09c7", "Requirements": [ "R6", "bslib", "cachem", "commonmark", "crayon", - "ellipsis", "fastmap", "fontawesome", "glue", @@ -1501,41 +1822,28 @@ "xtable" ] }, - "shinyFeedback": { - "Package": "shinyFeedback", - "Version": "0.4.0", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "88a6b7ff3d135195ad0011fec04336f2", - "Requirements": [ - "fontawesome", - "htmltools", - "jsonlite", - "shiny" - ] - }, "sourcetools": { "Package": "sourcetools", - "Version": "0.1.7", + "Version": "0.1.7-1", "Source": "Repository", "Repository": "CRAN", - "Hash": "947e4e02a79effa5d512473e10f41797", + "Hash": "5f5a7629f956619d519205ec475fe647", "Requirements": [] }, "stringi": { "Package": "stringi", - "Version": "1.7.8", + "Version": "1.8.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "a68b980681bcbc84c7a67003fa796bfb", + "Hash": "39e1144fd75428983dc3f63aa53dfa91", "Requirements": [] }, "stringr": { "Package": "stringr", - "Version": "1.5.0", + "Version": "1.5.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "671a4d384ae9d32fc47a14e98bfa3dc8", + "Hash": "960e2ae9e09656611e0b8214ad543207", "Requirements": [ "cli", "glue", @@ -1548,28 +1856,36 @@ }, "sys": { "Package": "sys", - "Version": "3.4.1", + "Version": "3.4.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "34c16f1ef796057bfa06d3f4ff818a5d", + "Hash": "3a1be13d68d47a8cd0bfd74739ca1555", "Requirements": [] }, "systemfonts": { "Package": "systemfonts", - "Version": "1.0.4", - "Source": "Repository", + "Version": "1.1.0", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "90b28393209827327de889f49935140a", + "RemoteType": "standard", + "RemotePkgRef": "systemfonts", + "RemoteRef": "systemfonts", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.1.0", + "Hash": "213b6b8ed5afbf934843e6c3b090d418", "Requirements": [ - "cpp11" + "cpp11", + "lifecycle" ] }, "testthat": { "Package": "testthat", - "Version": "3.1.5", + "Version": "3.2.1.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "6e3c4843f1ed0d3d90f35498671a001c", + "Hash": "3f6e7e5e2220856ff865e4834766bf2b", "Requirements": [ "R6", "brio", @@ -1577,7 +1893,6 @@ "cli", "desc", "digest", - "ellipsis", "evaluate", "jsonlite", "lifecycle", @@ -1593,21 +1908,29 @@ }, "textshaping": { "Package": "textshaping", - "Version": "0.3.6", - "Source": "Repository", + "Version": "0.4.0", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "1ab6223d3670fac7143202cb6a2d43d5", + "RemoteType": "standard", + "RemotePkgRef": "textshaping", + "RemoteRef": "textshaping", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "0.4.0", + "Hash": "5142f8bc78ed3d819d26461b641627ce", "Requirements": [ "cpp11", + "lifecycle", "systemfonts" ] }, "tibble": { "Package": "tibble", - "Version": "3.1.8", + "Version": "3.2.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "56b6934ef0f8c68225949a8672fe1a8f", + "Hash": "a84e2cc86d07289b3b6f5069df7a004c", "Requirements": [ "fansi", "lifecycle", @@ -1620,19 +1943,27 @@ }, "tidyr": { "Package": "tidyr", - "Version": "1.2.1", - "Source": "Repository", + "Version": "1.3.1", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "cdb403db0de33ccd1b6f53b83736efa8", + "RemoteType": "standard", + "RemotePkgRef": "tidyr", + "RemoteRef": "tidyr", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.3.1", + "Hash": "915fb7ce036c22a6a33b5a8adb712eb1", "Requirements": [ + "cli", "cpp11", "dplyr", - "ellipsis", "glue", "lifecycle", "magrittr", "purrr", "rlang", + "stringr", "tibble", "tidyselect", "vctrs" @@ -1640,10 +1971,10 @@ }, "tidyselect": { "Package": "tidyselect", - "Version": "1.2.0", + "Version": "1.2.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "79540e5fcd9e0435af547d885f184fd5", + "Hash": "829f27b9c4919c16b593794a6344d6c0", "Requirements": [ "cli", "glue", @@ -1655,14 +1986,21 @@ }, "tidyverse": { "Package": "tidyverse", - "Version": "1.3.2", - "Source": "Repository", + "Version": "2.0.0", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "972389aea7fa1a34739054a810d0c6f6", + "RemoteType": "standard", + "RemotePkgRef": "tidyverse", + "RemoteRef": "tidyverse", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "2.0.0", + "Hash": "c328568cd14ea89a83bd4ca7f54ae07e", "Requirements": [ "broom", "cli", - "crayon", + "conflicted", "dbplyr", "dplyr", "dtplyr", @@ -1679,6 +2017,7 @@ "modelr", "pillar", "purrr", + "ragg", "readr", "readxl", "reprex", @@ -1693,30 +2032,37 @@ }, "timechange": { "Package": "timechange", - "Version": "0.1.1", - "Source": "Repository", + "Version": "0.3.0", + "Source": "CRAN", "Repository": "CRAN", - "Hash": "4657195cc632097bb8d140d626b519fb", + "RemoteType": "standard", + "RemotePkgRef": "timechange", + "RemoteRef": "timechange", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "0.3.0", + "Hash": "c5f3c201b931cd6474d17d8700ccb1c8", "Requirements": [ "cpp11" ] }, "tinytex": { "Package": "tinytex", - "Version": "0.42", + "Version": "0.51", "Source": "Repository", "Repository": "CRAN", - "Hash": "7629c6c1540835d5248e6e7df265fa74", + "Hash": "d44e2fcd2e4e076f0aac540208559d1d", "Requirements": [ "xfun" ] }, "tzdb": { "Package": "tzdb", - "Version": "0.3.0", + "Version": "0.4.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "b2e1cbce7c903eaf23ec05c58e59fb5e", + "Hash": "f561504ec2897f4d46f0c7657e488ae1", "Requirements": [ "cpp11" ] @@ -1735,10 +2081,10 @@ }, "usethis": { "Package": "usethis", - "Version": "2.1.6", + "Version": "2.2.3", "Source": "Repository", "Repository": "CRAN", - "Hash": "a67a22c201832b12c036cc059f1d137d", + "Hash": "d524fd42c517035027f866064417d7e6", "Requirements": [ "cli", "clipr", @@ -1763,26 +2109,33 @@ }, "utf8": { "Package": "utf8", - "Version": "1.2.2", + "Version": "1.2.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "c9c462b759a5cc844ae25b5942654d13", + "Hash": "62b65c52671e6665f803ff02954446e9", "Requirements": [] }, "uuid": { "Package": "uuid", - "Version": "1.1-0", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "f1cb46c157d080b729159d407be83496", + "Version": "1.2-1", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "uuid", + "RemoteRef": "uuid", + "RemoteRepos": "https://cran.rstudio.com", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.2-1", + "Hash": "34e965e62a41fcafb1ca60e9b142085b", "Requirements": [] }, "vctrs": { "Package": "vctrs", - "Version": "0.5.1", + "Version": "0.6.5", "Source": "Repository", "Repository": "CRAN", - "Hash": "970324f6572b4fd81db507b5d4062cb0", + "Hash": "c03fa420630029418f7e6da3667aac4a", "Requirements": [ "cli", "glue", @@ -1792,10 +2145,10 @@ }, "viridis": { "Package": "viridis", - "Version": "0.6.2", + "Version": "0.6.5", "Source": "Repository", "Repository": "CRAN", - "Hash": "ee96aee95a7a563e5496f8991e9fde4b", + "Hash": "acd96d9fa70adeea4a5a1150609b9745", "Requirements": [ "ggplot2", "gridExtra", @@ -1804,18 +2157,25 @@ }, "viridisLite": { "Package": "viridisLite", - "Version": "0.4.1", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "62f4b5da3e08d8e5bcba6cac15603f70", + "Version": "0.4.2", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "viridisLite", + "RemoteRef": "viridisLite", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "0.4.2", + "Hash": "c826c7c4241b6fc89ff55aaea3fa7491", "Requirements": [] }, "vroom": { "Package": "vroom", - "Version": "1.6.0", + "Version": "1.6.5", "Source": "Repository", "Repository": "CRAN", - "Hash": "64f81fdead6e0d250fb041e175d123ab", + "Hash": "390f9315bc0025be03012054103d227c", "Requirements": [ "bit64", "cli", @@ -1835,10 +2195,10 @@ }, "waldo": { "Package": "waldo", - "Version": "0.4.0", + "Version": "0.5.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "035fba89d0c86e2113120f93301b98ad", + "Hash": "c7d3fd6d29ab077cbac8f0e2751449e6", "Requirements": [ "cli", "diffobj", @@ -1859,34 +2219,44 @@ }, "withr": { "Package": "withr", - "Version": "2.5.0", + "Version": "3.0.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "c0e49a9760983e81e55cdd9be92e7182", + "Hash": "d31b6c62c10dcf11ec530ca6b0dd5d35", "Requirements": [] }, "xfun": { "Package": "xfun", - "Version": "0.39", + "Version": "0.45", "Source": "Repository", "Repository": "CRAN", - "Hash": "8f56e9acb54fb525e66464d57ab58bcb", + "Hash": "ca59c87fe305b16a9141a5874c3a7889", "Requirements": [] }, "xml2": { "Package": "xml2", - "Version": "1.3.3", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "40682ed6a969ea5abfd351eb67833adc", - "Requirements": [] + "Version": "1.3.6", + "Source": "CRAN", + "Repository": "CRAN", + "RemoteType": "standard", + "RemotePkgRef": "xml2", + "RemoteRef": "xml2", + "RemoteRepos": "https://cloud.r-project.org", + "RemoteReposName": "CRAN", + "RemotePkgPlatform": "x86_64-w64-mingw32", + "RemoteSha": "1.3.6", + "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61", + "Requirements": [ + "cli", + "rlang" + ] }, "xopen": { "Package": "xopen", - "Version": "1.0.0", + "Version": "1.0.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "6c85f015dee9cc7710ddd20f86881f58", + "Hash": "423df1e86d5533fcb73c6b02b4923b49", "Requirements": [ "processx" ] @@ -1901,18 +2271,18 @@ }, "yaml": { "Package": "yaml", - "Version": "2.3.6", + "Version": "2.3.9", "Source": "Repository", "Repository": "CRAN", - "Hash": "9b570515751dcbae610f29885e025b41", + "Hash": "9cb28d11799d93c953f852083d55ee9e", "Requirements": [] }, "zip": { "Package": "zip", - "Version": "2.2.2", + "Version": "2.3.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "c42bfcec3fa6a0cce17ce1f8bc684f88", + "Hash": "fcc4bd8e6da2d2011eb64a5e5cc685ab", "Requirements": [] } }