diff --git a/_quarto.yml b/_quarto.yml
index 57b55ea..ca092dd 100644
--- a/_quarto.yml
+++ b/_quarto.yml
@@ -6,16 +6,16 @@ book:
   title: "The `moiraine` R package user manual"
   author: "Olivia Angelin-Bonnet"
   search: true
-  site-url: https://solid-lamp-kq546rq.pages.github.io/
+  site-url: https://plant-food-research-open.github.io/moiraine-manual/
   sharing: [twitter]
   sidebar:
     tools:
       - icon: github
         menu:
           - text: Manual source code
-            url: https://github.com/PlantandFoodResearch/moiraine-manual
+            url: https://github.com/Plant-Food-Research-Open/moiraine-manual
           - text: Package source code
-            url: https://github.com/PlantandFoodResearch/moiraine
+            url: https://github.com/Plant-Food-Research-Open/moiraine
   chapters:
     - index.qmd
     - overview.qmd
diff --git a/docs/comparison.html b/docs/comparison.html
index 280fd93..e174c0f 100644
--- a/docs/comparison.html
+++ b/docs/comparison.html
@@ -137,12 +137,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">14</span>&nb
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/comparison_files/figure-html/plot-features-weight-average-1.png b/docs/comparison_files/figure-html/plot-features-weight-average-1.png
index f086cf5..37bc215 100644
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diff --git a/docs/comparison_files/figure-html/plot-features-weight-pair-1.png b/docs/comparison_files/figure-html/plot-features-weight-pair-1.png
index a920a16..46d8da2 100644
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diff --git a/docs/comparison_files/figure-html/plot-features-weight-raw-1.png b/docs/comparison_files/figure-html/plot-features-weight-raw-1.png
index f88329d..d942ce9 100644
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diff --git a/docs/comparison_files/figure-html/plot-features_weight-pair-mofa-1.png b/docs/comparison_files/figure-html/plot-features_weight-pair-mofa-1.png
index 8465fb7..469747b 100644
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diff --git a/docs/data_import.html b/docs/data_import.html
index b20b9f3..8881186 100644
--- a/docs/data_import.html
+++ b/docs/data_import.html
@@ -156,12 +156,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">3</span>&nbs
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/diablo.html b/docs/diablo.html
index 717e150..f2dd60f 100644
--- a/docs/diablo.html
+++ b/docs/diablo.html
@@ -137,12 +137,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">11</span>&nb
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/evaluation.html b/docs/evaluation.html
index 7419d73..9c38226 100644
--- a/docs/evaluation.html
+++ b/docs/evaluation.html
@@ -156,12 +156,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">13</span>&nb
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/example_dataset.html b/docs/example_dataset.html
index be74eb2..c682a0b 100644
--- a/docs/example_dataset.html
+++ b/docs/example_dataset.html
@@ -107,12 +107,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">2</span>&nbs
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
@@ -310,7 +310,7 @@ <h2 data-number="2.2" class="anchored" data-anchor-id="omics-analyses"><span cla
 </section>
 <section id="data-processing" class="level2" data-number="2.3">
 <h2 data-number="2.3" class="anchored" data-anchor-id="data-processing"><span class="header-section-number">2.3</span> Data processing</h2>
-<p>The full script for the data processing can be found in the <a href="https://github.com/PlantandFoodResearch/moiraine/blob/main/data-raw/example_dataset_li2022.R"><code>moiraine</code> GitHub repository</a>.</p>
+<p>The full script for the data processing can be found in the <a href="https://github.com/Plant-Food-Research-Open/moiraine/blob/main/data-raw/example_dataset_li2022.R"><code>moiraine</code> GitHub repository</a>.</p>
 <section id="genomics-dataset" class="level3" data-number="2.3.1">
 <h3 data-number="2.3.1" class="anchored" data-anchor-id="genomics-dataset"><span class="header-section-number">2.3.1</span> Genomics dataset</h3>
 <p>The matrix of SNP dosage and table of SNP information were downloaded from the <a href="https://doi.org/10.5683/SP3/ZETWNY">borealis database</a>. The list of significant QTLs and eQTLs was extracted from the <a href="https://figshare.com/articles/dataset/DataSheet1_Applying_multi-omics_data_to_study_the_genetic_background_of_bovine_respiratory_disease_infection_in_feedlot_crossbred_cattle_xlsx/21708890">supplementary file</a> made available on Figshare alongside the article and completed with information from Table 1 from <span class="citation" data-cites="li2022">Li et al. (<a href="references.html#ref-li2022" role="doc-biblioref">2022</a>)</span>. Note that some of the QTLs and eQTLs listed in the article and supplementary material were obtained from the RNAseq dataset, and so are not present in the version of the dataset used for the present tutorial. If a SNP was selected as both QTL and eQTL, only the results yielding the smallest FDR value were retained.</p>
diff --git a/docs/index.html b/docs/index.html
index f354ca3..49ea228 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -137,12 +137,12 @@ <h1 class="quarto-secondary-nav-title">The <code>moiraine</code> R package user
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/inspecting_multidataset.html b/docs/inspecting_multidataset.html
index 45d461e..67b8324 100644
--- a/docs/inspecting_multidataset.html
+++ b/docs/inspecting_multidataset.html
@@ -137,12 +137,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">4</span>&nbs
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/interpretation.html b/docs/interpretation.html
index 8607393..0797710 100644
--- a/docs/interpretation.html
+++ b/docs/interpretation.html
@@ -137,12 +137,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">12</span>&nb
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/interpretation_files/figure-html/diablo-features-weight-pair-1.png b/docs/interpretation_files/figure-html/diablo-features-weight-pair-1.png
index 1005b6d..93f028a 100644
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diff --git a/docs/interpretation_files/figure-html/mofa-features-weight-pair-1.png b/docs/interpretation_files/figure-html/mofa-features-weight-pair-1.png
index c57bb8f..76ae86d 100644
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diff --git a/docs/interpretation_files/figure-html/so2pls-features-weight-pair-1.png b/docs/interpretation_files/figure-html/so2pls-features-weight-pair-1.png
index 009db29..6445ae4 100644
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diff --git a/docs/interpretation_files/figure-html/spls-features-weight-pair-1.png b/docs/interpretation_files/figure-html/spls-features-weight-pair-1.png
index da08e51..f4cbada 100644
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diff --git a/docs/modifying_multidataset.html b/docs/modifying_multidataset.html
index b1ae8c9..98ebd8b 100644
--- a/docs/modifying_multidataset.html
+++ b/docs/modifying_multidataset.html
@@ -137,12 +137,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">5</span>&nbs
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
@@ -649,11 +649,11 @@ <h1 class="title"><span id="sec-modifying-multidataset" class="quarto-section-id
 <span><span class="co">#&gt; # A tibble: 6 × 2</span></span>
 <span><span class="co">#&gt;   id    new_group</span></span>
 <span><span class="co">#&gt;   &lt;chr&gt; &lt;chr&gt;    </span></span>
-<span><span class="co">#&gt; 1 R21   b        </span></span>
-<span><span class="co">#&gt; 2 Y3660 a        </span></span>
-<span><span class="co">#&gt; 3 Y3243 b        </span></span>
-<span><span class="co">#&gt; 4 R5764 a        </span></span>
-<span><span class="co">#&gt; 5 P4669 c        </span></span>
+<span><span class="co">#&gt; 1 R21   c        </span></span>
+<span><span class="co">#&gt; 2 Y3660 b        </span></span>
+<span><span class="co">#&gt; 3 Y3243 c        </span></span>
+<span><span class="co">#&gt; 4 R5764 b        </span></span>
+<span><span class="co">#&gt; 5 P4669 b        </span></span>
 <span><span class="co">#&gt; 6 R5452 c</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </div>
 <p>Note that the sample IDs must be stored in a column named <code>id</code>. We will use the <code><a href="https://rdrr.io/pkg/moiraine/man/add_samples_metadata.html">add_samples_metadata()</a></code> function to add this new data-frame to the samples metadata in our <code>MultiDataSet</code> object. There are several options for which samples metadata tables should be modified; this is controlled through the <code>datasets</code> argument of the function. By default, the information is added to the samples metadata table of all omics datasets (case when <code>datasets = NULL</code>):</p>
@@ -678,11 +678,11 @@ <h1 class="title"><span id="sec-modifying-multidataset" class="quarto-section-id
 <span><span class="co">#&gt; P4669 P4669      F3   male     BRD          35           B2    0.389393</span></span>
 <span><span class="co">#&gt; R5452 R5452      F2   male Control          49           B1    0.265998</span></span>
 <span><span class="co">#&gt;       geno_comp_2 geno_comp_3 geno_comp_cluster new_group</span></span>
-<span><span class="co">#&gt; R21      0.820691    0.171456                K3         b</span></span>
-<span><span class="co">#&gt; Y3660    0.093585    0.054195                K2         a</span></span>
-<span><span class="co">#&gt; Y3243    0.190262    0.765567                K1         b</span></span>
-<span><span class="co">#&gt; R5764    0.676299    0.110607                K3         a</span></span>
-<span><span class="co">#&gt; P4669    0.503471    0.107136                K3         c</span></span>
+<span><span class="co">#&gt; R21      0.820691    0.171456                K3         c</span></span>
+<span><span class="co">#&gt; Y3660    0.093585    0.054195                K2         b</span></span>
+<span><span class="co">#&gt; Y3243    0.190262    0.765567                K1         c</span></span>
+<span><span class="co">#&gt; R5764    0.676299    0.110607                K3         b</span></span>
+<span><span class="co">#&gt; P4669    0.503471    0.107136                K3         b</span></span>
 <span><span class="co">#&gt; R5452    0.733992    0.000010                K3         c</span></span>
 <span><span class="co">#&gt; </span></span>
 <span><span class="co">#&gt; $rnaseq</span></span>
@@ -694,12 +694,12 @@ <h1 class="title"><span id="sec-modifying-multidataset" class="quarto-section-id
 <span><span class="co">#&gt; R9504 R9504      F2   male    BRD          31           B1    0.000010</span></span>
 <span><span class="co">#&gt; R5994 R5994      F2   male    BRD          24           B1    0.129271</span></span>
 <span><span class="co">#&gt;       geno_comp_2 geno_comp_3 geno_comp_cluster new_group</span></span>
-<span><span class="co">#&gt; R9497    0.744505    0.101779                K3         b</span></span>
-<span><span class="co">#&gt; R5969    0.625823    0.263514                K3         c</span></span>
-<span><span class="co">#&gt; R5327    0.809396    0.049874                K3         b</span></span>
-<span><span class="co">#&gt; R5979    0.107794    0.605473                K1         c</span></span>
-<span><span class="co">#&gt; R9504    0.998913    0.001077                K3         a</span></span>
-<span><span class="co">#&gt; R5994    0.034351    0.836377                K1         a</span></span>
+<span><span class="co">#&gt; R9497    0.744505    0.101779                K3         c</span></span>
+<span><span class="co">#&gt; R5969    0.625823    0.263514                K3         a</span></span>
+<span><span class="co">#&gt; R5327    0.809396    0.049874                K3         c</span></span>
+<span><span class="co">#&gt; R5979    0.107794    0.605473                K1         a</span></span>
+<span><span class="co">#&gt; R9504    0.998913    0.001077                K3         b</span></span>
+<span><span class="co">#&gt; R5994    0.034351    0.836377                K1         c</span></span>
 <span><span class="co">#&gt; </span></span>
 <span><span class="co">#&gt; $metabolome</span></span>
 <span><span class="co">#&gt;          id feedlot gender  status day_on_feed rnaseq_batch geno_comp_1</span></span>
@@ -710,11 +710,11 @@ <h1 class="title"><span id="sec-modifying-multidataset" class="quarto-section-id
 <span><span class="co">#&gt; P4669 P4669      F3   male     BRD          35           B2    0.389393</span></span>
 <span><span class="co">#&gt; R5452 R5452      F2   male Control          49           B1    0.265998</span></span>
 <span><span class="co">#&gt;       geno_comp_2 geno_comp_3 geno_comp_cluster new_group</span></span>
-<span><span class="co">#&gt; R21      0.820691    0.171456                K3         b</span></span>
-<span><span class="co">#&gt; Y3660    0.093585    0.054195                K2         a</span></span>
-<span><span class="co">#&gt; Y3243    0.190262    0.765567                K1         b</span></span>
-<span><span class="co">#&gt; R5764    0.676299    0.110607                K3         a</span></span>
-<span><span class="co">#&gt; P4669    0.503471    0.107136                K3         c</span></span>
+<span><span class="co">#&gt; R21      0.820691    0.171456                K3         c</span></span>
+<span><span class="co">#&gt; Y3660    0.093585    0.054195                K2         b</span></span>
+<span><span class="co">#&gt; Y3243    0.190262    0.765567                K1         c</span></span>
+<span><span class="co">#&gt; R5764    0.676299    0.110607                K3         b</span></span>
+<span><span class="co">#&gt; P4669    0.503471    0.107136                K3         b</span></span>
 <span><span class="co">#&gt; R5452    0.733992    0.000010                K3         c</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </div>
 <p>However, it is also possible to specify for which dataset(s) the changes should be made, by passing their name to the <code>datasets</code> argument.</p>
@@ -757,12 +757,12 @@ <h1 class="title"><span id="sec-modifying-multidataset" class="quarto-section-id
 <span><span class="co">#&gt; R9504 R9504      F2   male    BRD          31           B1    0.000010</span></span>
 <span><span class="co">#&gt; R5994 R5994      F2   male    BRD          24           B1    0.129271</span></span>
 <span><span class="co">#&gt;       geno_comp_2 geno_comp_3 geno_comp_cluster new_group</span></span>
-<span><span class="co">#&gt; R9497    0.744505    0.101779                K3         b</span></span>
-<span><span class="co">#&gt; R5969    0.625823    0.263514                K3         c</span></span>
-<span><span class="co">#&gt; R5327    0.809396    0.049874                K3         b</span></span>
-<span><span class="co">#&gt; R5979    0.107794    0.605473                K1         c</span></span>
-<span><span class="co">#&gt; R9504    0.998913    0.001077                K3         a</span></span>
-<span><span class="co">#&gt; R5994    0.034351    0.836377                K1         a</span></span>
+<span><span class="co">#&gt; R9497    0.744505    0.101779                K3         c</span></span>
+<span><span class="co">#&gt; R5969    0.625823    0.263514                K3         a</span></span>
+<span><span class="co">#&gt; R5327    0.809396    0.049874                K3         c</span></span>
+<span><span class="co">#&gt; R5979    0.107794    0.605473                K1         a</span></span>
+<span><span class="co">#&gt; R9504    0.998913    0.001077                K3         b</span></span>
+<span><span class="co">#&gt; R5994    0.034351    0.836377                K1         c</span></span>
 <span><span class="co">#&gt; </span></span>
 <span><span class="co">#&gt; $metabolome</span></span>
 <span><span class="co">#&gt;          id feedlot gender  status day_on_feed rnaseq_batch geno_comp_1</span></span>
@@ -773,11 +773,11 @@ <h1 class="title"><span id="sec-modifying-multidataset" class="quarto-section-id
 <span><span class="co">#&gt; P4669 P4669      F3   male     BRD          35           B2    0.389393</span></span>
 <span><span class="co">#&gt; R5452 R5452      F2   male Control          49           B1    0.265998</span></span>
 <span><span class="co">#&gt;       geno_comp_2 geno_comp_3 geno_comp_cluster new_group</span></span>
-<span><span class="co">#&gt; R21      0.820691    0.171456                K3         b</span></span>
-<span><span class="co">#&gt; Y3660    0.093585    0.054195                K2         a</span></span>
-<span><span class="co">#&gt; Y3243    0.190262    0.765567                K1         b</span></span>
-<span><span class="co">#&gt; R5764    0.676299    0.110607                K3         a</span></span>
-<span><span class="co">#&gt; P4669    0.503471    0.107136                K3         c</span></span>
+<span><span class="co">#&gt; R21      0.820691    0.171456                K3         c</span></span>
+<span><span class="co">#&gt; Y3660    0.093585    0.054195                K2         b</span></span>
+<span><span class="co">#&gt; Y3243    0.190262    0.765567                K1         c</span></span>
+<span><span class="co">#&gt; R5764    0.676299    0.110607                K3         b</span></span>
+<span><span class="co">#&gt; P4669    0.503471    0.107136                K3         b</span></span>
 <span><span class="co">#&gt; R5452    0.733992    0.000010                K3         c</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </div>
 <p>In both cases, the function throws some warnings to alert about samples missing from this new table, or samples that are not present in the original samples metadata table. These warnings should be checked to avoid issues due to typos, etc.</p>
diff --git a/docs/mofa.html b/docs/mofa.html
index d7d4862..2698369 100644
--- a/docs/mofa.html
+++ b/docs/mofa.html
@@ -137,12 +137,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">10</span>&nb
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/overview.html b/docs/overview.html
index d7130a6..ffbf8cb 100644
--- a/docs/overview.html
+++ b/docs/overview.html
@@ -137,12 +137,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">1</span>&nbs
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/overview_files/figure-html/show-features-weight-comp-1.png b/docs/overview_files/figure-html/show-features-weight-comp-1.png
index 28af3ed..09b6064 100644
Binary files a/docs/overview_files/figure-html/show-features-weight-comp-1.png and b/docs/overview_files/figure-html/show-features-weight-comp-1.png differ
diff --git a/docs/prefiltering.html b/docs/prefiltering.html
index fa9593d..ae1fa0e 100644
--- a/docs/prefiltering.html
+++ b/docs/prefiltering.html
@@ -156,12 +156,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">7</span>&nbs
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/preprocessing.html b/docs/preprocessing.html
index ada60d5..0ada172 100644
--- a/docs/preprocessing.html
+++ b/docs/preprocessing.html
@@ -137,12 +137,12 @@ <h1 class="quarto-secondary-nav-title"><span class="chapter-number">6</span>&nbs
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
 <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/references.html b/docs/references.html
index 3185a2f..080487e 100644
--- a/docs/references.html
+++ b/docs/references.html
@@ -106,12 +106,12 @@ <h1 class="quarto-secondary-nav-title">References</h1>
     <a href="" title="" id="sidebar-tool-dropdown-0" class="sidebar-tool dropdown-toggle px-1" data-bs-toggle="dropdown" aria-expanded="false"><i class="bi bi-github"></i></a>
     <ul class="dropdown-menu" aria-labelledby="sidebar-tool-dropdown-0">
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine-manual">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine-manual">
           Manual source code
           </a>
         </li>
         <li>
-          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/PlantandFoodResearch/moiraine">
+          <a class="dropdown-item sidebar-tools-main-item" href="https://github.com/Plant-Food-Research-Open/moiraine">
           Package source code
           </a>
         </li>
diff --git a/docs/robots.txt b/docs/robots.txt
index 42f82d7..3fa8d23 100644
--- a/docs/robots.txt
+++ b/docs/robots.txt
@@ -1 +1 @@
-Sitemap: https://solid-lamp-kq546rq.pages.github.io/sitemap.xml
+Sitemap: https://plant-food-research-open.github.io/moiraine-manual/sitemap.xml
diff --git a/docs/search.json b/docs/search.json
index 64c820d..27d2b41 100644
--- a/docs/search.json
+++ b/docs/search.json
@@ -200,7 +200,7 @@
     "href": "modifying_multidataset.html#adding-information-to-samples-metadata",
     "title": "5  Modifying the MultiDataSet object",
     "section": "\n5.3 Adding information to samples metadata",
-    "text": "5.3 Adding information to samples metadata\nSimilarly, we can add a data-frame of information to the samples metadata. Here, we will create a table that contains “new” simulated information about the samples that we want to incorporate in our MultiDataSet object.\n\n## Getting the list of samples ID across the datasets\nsamples_list <- get_samples(mo_set) |>\n  unlist() |>\n  unname() |>\n  unique()\n\n## Simulating new information table, with new samples grouping\nnew_samples_df <- tibble(id = samples_list) |>\n  mutate(new_group = sample(letters[1:3], n(), replace = TRUE))\n\nhead(new_samples_df)\n#> # A tibble: 6 × 2\n#>   id    new_group\n#>   <chr> <chr>    \n#> 1 R21   b        \n#> 2 Y3660 a        \n#> 3 Y3243 b        \n#> 4 R5764 a        \n#> 5 P4669 c        \n#> 6 R5452 c\n\nNote that the sample IDs must be stored in a column named id. We will use the add_samples_metadata() function to add this new data-frame to the samples metadata in our MultiDataSet object. There are several options for which samples metadata tables should be modified; this is controlled through the datasets argument of the function. By default, the information is added to the samples metadata table of all omics datasets (case when datasets = NULL):\n\nmo_set_new_samples_info <- add_samples_metadata(mo_set, new_samples_df)\n#> Warning: snps dataset: 5 sample IDs not in 'mo_data', will be removed from\n#> samples metadata.\n#> Warning: rnaseq dataset: 1 sample IDs not in 'mo_data', will be removed from\n#> samples metadata.\n#> Warning: metabolome dataset: 5 sample IDs not in 'mo_data', will be removed\n#> from samples metadata.\n\nmo_set_new_samples_info |>\n  get_samples_metadata() |>\n  map(head)\n#> $snps\n#>          id feedlot gender  status day_on_feed rnaseq_batch geno_comp_1\n#> R21     R21      F1 female Control          31           B2    0.007853\n#> Y3660 Y3660      F1   male Control          19           B2    0.852220\n#> Y3243 Y3243      F1   male Control          16           B2    0.044171\n#> R5764 R5764      F2   male Control          46           B1    0.213094\n#> P4669 P4669      F3   male     BRD          35           B2    0.389393\n#> R5452 R5452      F2   male Control          49           B1    0.265998\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster new_group\n#> R21      0.820691    0.171456                K3         b\n#> Y3660    0.093585    0.054195                K2         a\n#> Y3243    0.190262    0.765567                K1         b\n#> R5764    0.676299    0.110607                K3         a\n#> P4669    0.503471    0.107136                K3         c\n#> R5452    0.733992    0.000010                K3         c\n#> \n#> $rnaseq\n#>          id feedlot gender status day_on_feed rnaseq_batch geno_comp_1\n#> R9497 R9497      F2   male    BRD          35           B1    0.153716\n#> R5969 R5969      F2   male    BRD          24           B1    0.110663\n#> R5327 R5327      F2   male    BRD          38           B1    0.140730\n#> R5979 R5979      F2   male    BRD          30           B1    0.286733\n#> R9504 R9504      F2   male    BRD          31           B1    0.000010\n#> R5994 R5994      F2   male    BRD          24           B1    0.129271\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster new_group\n#> R9497    0.744505    0.101779                K3         b\n#> R5969    0.625823    0.263514                K3         c\n#> R5327    0.809396    0.049874                K3         b\n#> R5979    0.107794    0.605473                K1         c\n#> R9504    0.998913    0.001077                K3         a\n#> R5994    0.034351    0.836377                K1         a\n#> \n#> $metabolome\n#>          id feedlot gender  status day_on_feed rnaseq_batch geno_comp_1\n#> R21     R21      F1 female Control          31           B2    0.007853\n#> Y3660 Y3660      F1   male Control          19           B2    0.852220\n#> Y3243 Y3243      F1   male Control          16           B2    0.044171\n#> R5764 R5764      F2   male Control          46           B1    0.213094\n#> P4669 P4669      F3   male     BRD          35           B2    0.389393\n#> R5452 R5452      F2   male Control          49           B1    0.265998\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster new_group\n#> R21      0.820691    0.171456                K3         b\n#> Y3660    0.093585    0.054195                K2         a\n#> Y3243    0.190262    0.765567                K1         b\n#> R5764    0.676299    0.110607                K3         a\n#> P4669    0.503471    0.107136                K3         c\n#> R5452    0.733992    0.000010                K3         c\n\nHowever, it is also possible to specify for which dataset(s) the changes should be made, by passing their name to the datasets argument.\n\nmo_set_new_samples_info <- add_samples_metadata(\n  mo_set, \n  new_samples_df, \n  datasets = c(\"rnaseq\", \"metabolome\")\n)\n#> Warning: rnaseq dataset: 1 sample IDs not in 'mo_data', will be removed from\n#> samples metadata.\n#> Warning: metabolome dataset: 5 sample IDs not in 'mo_data', will be removed\n#> from samples metadata.\n\nmo_set_new_samples_info |>\n  get_samples_metadata() |>\n  map(head)\n#> $snps\n#>          id feedlot gender  status day_on_feed rnaseq_batch geno_comp_1\n#> R21     R21      F1 female Control          31           B2    0.007853\n#> Y3660 Y3660      F1   male Control          19           B2    0.852220\n#> Y3243 Y3243      F1   male Control          16           B2    0.044171\n#> R5764 R5764      F2   male Control          46           B1    0.213094\n#> P4669 P4669      F3   male     BRD          35           B2    0.389393\n#> R5452 R5452      F2   male Control          49           B1    0.265998\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster\n#> R21      0.820691    0.171456                K3\n#> Y3660    0.093585    0.054195                K2\n#> Y3243    0.190262    0.765567                K1\n#> R5764    0.676299    0.110607                K3\n#> P4669    0.503471    0.107136                K3\n#> R5452    0.733992    0.000010                K3\n#> \n#> $rnaseq\n#>          id feedlot gender status day_on_feed rnaseq_batch geno_comp_1\n#> R9497 R9497      F2   male    BRD          35           B1    0.153716\n#> R5969 R5969      F2   male    BRD          24           B1    0.110663\n#> R5327 R5327      F2   male    BRD          38           B1    0.140730\n#> R5979 R5979      F2   male    BRD          30           B1    0.286733\n#> R9504 R9504      F2   male    BRD          31           B1    0.000010\n#> R5994 R5994      F2   male    BRD          24           B1    0.129271\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster new_group\n#> R9497    0.744505    0.101779                K3         b\n#> R5969    0.625823    0.263514                K3         c\n#> R5327    0.809396    0.049874                K3         b\n#> R5979    0.107794    0.605473                K1         c\n#> R9504    0.998913    0.001077                K3         a\n#> R5994    0.034351    0.836377                K1         a\n#> \n#> $metabolome\n#>          id feedlot gender  status day_on_feed rnaseq_batch geno_comp_1\n#> R21     R21      F1 female Control          31           B2    0.007853\n#> Y3660 Y3660      F1   male Control          19           B2    0.852220\n#> Y3243 Y3243      F1   male Control          16           B2    0.044171\n#> R5764 R5764      F2   male Control          46           B1    0.213094\n#> P4669 P4669      F3   male     BRD          35           B2    0.389393\n#> R5452 R5452      F2   male Control          49           B1    0.265998\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster new_group\n#> R21      0.820691    0.171456                K3         b\n#> Y3660    0.093585    0.054195                K2         a\n#> Y3243    0.190262    0.765567                K1         b\n#> R5764    0.676299    0.110607                K3         a\n#> P4669    0.503471    0.107136                K3         c\n#> R5452    0.733992    0.000010                K3         c\n\nIn both cases, the function throws some warnings to alert about samples missing from this new table, or samples that are not present in the original samples metadata table. These warnings should be checked to avoid issues due to typos, etc.\nAs with the add_features_metadata() function, it is possible to add information about only a subset of the samples; however the columns in the new data-frame must not already be present in the features metadata tables to which it will be added."
+    "text": "5.3 Adding information to samples metadata\nSimilarly, we can add a data-frame of information to the samples metadata. Here, we will create a table that contains “new” simulated information about the samples that we want to incorporate in our MultiDataSet object.\n\n## Getting the list of samples ID across the datasets\nsamples_list <- get_samples(mo_set) |>\n  unlist() |>\n  unname() |>\n  unique()\n\n## Simulating new information table, with new samples grouping\nnew_samples_df <- tibble(id = samples_list) |>\n  mutate(new_group = sample(letters[1:3], n(), replace = TRUE))\n\nhead(new_samples_df)\n#> # A tibble: 6 × 2\n#>   id    new_group\n#>   <chr> <chr>    \n#> 1 R21   c        \n#> 2 Y3660 b        \n#> 3 Y3243 c        \n#> 4 R5764 b        \n#> 5 P4669 b        \n#> 6 R5452 c\n\nNote that the sample IDs must be stored in a column named id. We will use the add_samples_metadata() function to add this new data-frame to the samples metadata in our MultiDataSet object. There are several options for which samples metadata tables should be modified; this is controlled through the datasets argument of the function. By default, the information is added to the samples metadata table of all omics datasets (case when datasets = NULL):\n\nmo_set_new_samples_info <- add_samples_metadata(mo_set, new_samples_df)\n#> Warning: snps dataset: 5 sample IDs not in 'mo_data', will be removed from\n#> samples metadata.\n#> Warning: rnaseq dataset: 1 sample IDs not in 'mo_data', will be removed from\n#> samples metadata.\n#> Warning: metabolome dataset: 5 sample IDs not in 'mo_data', will be removed\n#> from samples metadata.\n\nmo_set_new_samples_info |>\n  get_samples_metadata() |>\n  map(head)\n#> $snps\n#>          id feedlot gender  status day_on_feed rnaseq_batch geno_comp_1\n#> R21     R21      F1 female Control          31           B2    0.007853\n#> Y3660 Y3660      F1   male Control          19           B2    0.852220\n#> Y3243 Y3243      F1   male Control          16           B2    0.044171\n#> R5764 R5764      F2   male Control          46           B1    0.213094\n#> P4669 P4669      F3   male     BRD          35           B2    0.389393\n#> R5452 R5452      F2   male Control          49           B1    0.265998\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster new_group\n#> R21      0.820691    0.171456                K3         c\n#> Y3660    0.093585    0.054195                K2         b\n#> Y3243    0.190262    0.765567                K1         c\n#> R5764    0.676299    0.110607                K3         b\n#> P4669    0.503471    0.107136                K3         b\n#> R5452    0.733992    0.000010                K3         c\n#> \n#> $rnaseq\n#>          id feedlot gender status day_on_feed rnaseq_batch geno_comp_1\n#> R9497 R9497      F2   male    BRD          35           B1    0.153716\n#> R5969 R5969      F2   male    BRD          24           B1    0.110663\n#> R5327 R5327      F2   male    BRD          38           B1    0.140730\n#> R5979 R5979      F2   male    BRD          30           B1    0.286733\n#> R9504 R9504      F2   male    BRD          31           B1    0.000010\n#> R5994 R5994      F2   male    BRD          24           B1    0.129271\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster new_group\n#> R9497    0.744505    0.101779                K3         c\n#> R5969    0.625823    0.263514                K3         a\n#> R5327    0.809396    0.049874                K3         c\n#> R5979    0.107794    0.605473                K1         a\n#> R9504    0.998913    0.001077                K3         b\n#> R5994    0.034351    0.836377                K1         c\n#> \n#> $metabolome\n#>          id feedlot gender  status day_on_feed rnaseq_batch geno_comp_1\n#> R21     R21      F1 female Control          31           B2    0.007853\n#> Y3660 Y3660      F1   male Control          19           B2    0.852220\n#> Y3243 Y3243      F1   male Control          16           B2    0.044171\n#> R5764 R5764      F2   male Control          46           B1    0.213094\n#> P4669 P4669      F3   male     BRD          35           B2    0.389393\n#> R5452 R5452      F2   male Control          49           B1    0.265998\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster new_group\n#> R21      0.820691    0.171456                K3         c\n#> Y3660    0.093585    0.054195                K2         b\n#> Y3243    0.190262    0.765567                K1         c\n#> R5764    0.676299    0.110607                K3         b\n#> P4669    0.503471    0.107136                K3         b\n#> R5452    0.733992    0.000010                K3         c\n\nHowever, it is also possible to specify for which dataset(s) the changes should be made, by passing their name to the datasets argument.\n\nmo_set_new_samples_info <- add_samples_metadata(\n  mo_set, \n  new_samples_df, \n  datasets = c(\"rnaseq\", \"metabolome\")\n)\n#> Warning: rnaseq dataset: 1 sample IDs not in 'mo_data', will be removed from\n#> samples metadata.\n#> Warning: metabolome dataset: 5 sample IDs not in 'mo_data', will be removed\n#> from samples metadata.\n\nmo_set_new_samples_info |>\n  get_samples_metadata() |>\n  map(head)\n#> $snps\n#>          id feedlot gender  status day_on_feed rnaseq_batch geno_comp_1\n#> R21     R21      F1 female Control          31           B2    0.007853\n#> Y3660 Y3660      F1   male Control          19           B2    0.852220\n#> Y3243 Y3243      F1   male Control          16           B2    0.044171\n#> R5764 R5764      F2   male Control          46           B1    0.213094\n#> P4669 P4669      F3   male     BRD          35           B2    0.389393\n#> R5452 R5452      F2   male Control          49           B1    0.265998\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster\n#> R21      0.820691    0.171456                K3\n#> Y3660    0.093585    0.054195                K2\n#> Y3243    0.190262    0.765567                K1\n#> R5764    0.676299    0.110607                K3\n#> P4669    0.503471    0.107136                K3\n#> R5452    0.733992    0.000010                K3\n#> \n#> $rnaseq\n#>          id feedlot gender status day_on_feed rnaseq_batch geno_comp_1\n#> R9497 R9497      F2   male    BRD          35           B1    0.153716\n#> R5969 R5969      F2   male    BRD          24           B1    0.110663\n#> R5327 R5327      F2   male    BRD          38           B1    0.140730\n#> R5979 R5979      F2   male    BRD          30           B1    0.286733\n#> R9504 R9504      F2   male    BRD          31           B1    0.000010\n#> R5994 R5994      F2   male    BRD          24           B1    0.129271\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster new_group\n#> R9497    0.744505    0.101779                K3         c\n#> R5969    0.625823    0.263514                K3         a\n#> R5327    0.809396    0.049874                K3         c\n#> R5979    0.107794    0.605473                K1         a\n#> R9504    0.998913    0.001077                K3         b\n#> R5994    0.034351    0.836377                K1         c\n#> \n#> $metabolome\n#>          id feedlot gender  status day_on_feed rnaseq_batch geno_comp_1\n#> R21     R21      F1 female Control          31           B2    0.007853\n#> Y3660 Y3660      F1   male Control          19           B2    0.852220\n#> Y3243 Y3243      F1   male Control          16           B2    0.044171\n#> R5764 R5764      F2   male Control          46           B1    0.213094\n#> P4669 P4669      F3   male     BRD          35           B2    0.389393\n#> R5452 R5452      F2   male Control          49           B1    0.265998\n#>       geno_comp_2 geno_comp_3 geno_comp_cluster new_group\n#> R21      0.820691    0.171456                K3         c\n#> Y3660    0.093585    0.054195                K2         b\n#> Y3243    0.190262    0.765567                K1         c\n#> R5764    0.676299    0.110607                K3         b\n#> P4669    0.503471    0.107136                K3         b\n#> R5452    0.733992    0.000010                K3         c\n\nIn both cases, the function throws some warnings to alert about samples missing from this new table, or samples that are not present in the original samples metadata table. These warnings should be checked to avoid issues due to typos, etc.\nAs with the add_features_metadata() function, it is possible to add information about only a subset of the samples; however the columns in the new data-frame must not already be present in the features metadata tables to which it will be added."
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index 298f338..e46d188 100644
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diff --git a/example_dataset.qmd b/example_dataset.qmd
index c8e2477..dd164ed 100644
--- a/example_dataset.qmd
+++ b/example_dataset.qmd
@@ -28,7 +28,7 @@ A differential concentration analysis was performed on the metabolomics data usi
  
 ## Data processing
 
-The full script for the data processing can be found in the [`moiraine` GitHub repository](https://github.com/PlantandFoodResearch/moiraine/blob/main/data-raw/example_dataset_li2022.R).
+The full script for the data processing can be found in the [`moiraine` GitHub repository](https://github.com/Plant-Food-Research-Open/moiraine/blob/main/data-raw/example_dataset_li2022.R).
 
 ### Genomics dataset