Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Misleading errors when the headers are missing in input CSVs #84

Open
GallVp opened this issue Oct 30, 2024 · 0 comments
Open

Misleading errors when the headers are missing in input CSVs #84

GallVp opened this issue Oct 30, 2024 · 0 comments
Assignees
Labels
bug Something isn't working

Comments

@GallVp
Copy link
Member

GallVp commented Oct 30, 2024

Description of the bug

For example, if the headers are missing for the CSV provided to --orthofinder_annotations, instead of producing an error message regarding missing headers, the following errors are produced regarding the entries.

  • -- Entry 1: Missing required value: tag
  • -- Entry 1: Missing required value: fasta
  • -- Entry 2: Missing required value: tag
  • -- Entry 2: Missing required value: fasta
  • -- Entry 3: Missing required value: tag

Command used and terminal output

No response

Relevant files

No response

System information

plant-food-research-open/genepal version 0.4.0

@GallVp GallVp added the bug Something isn't working label Oct 30, 2024
@GallVp GallVp removed their assignment Nov 21, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

2 participants