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Add Entrez mapping #80

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CeciliaDeng opened this issue Oct 29, 2024 · 2 comments
Open

Add Entrez mapping #80

CeciliaDeng opened this issue Oct 29, 2024 · 2 comments
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awaiting-feedback Awaiting more information from the user discussion needed Further discussion is needed enhancement New feature or request

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@CeciliaDeng
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Description of feature

The entrez IDs are super useful in RNASeq/enrichment analyses and would save us a lot of work if its done in the annotation step. This feature could help link our pipelines (genepal, rnaseq, fairGenomes) into a nice system. Can we have this feature added please?
@CeciliaDeng CeciliaDeng added the enhancement New feature or request label Oct 29, 2024
@GallVp GallVp added the discussion needed Further discussion is needed label Oct 29, 2024
@GallVp
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GallVp commented Oct 29, 2024 •
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A couple of questions,

  • What is a Entrez ID? Can you please provide an example?
  • Is this feature not already covered by eggnog mapper? Can you please look at the results/*/*.emapper.annotations and results/*/*.emapper.seed_orthologs, etc. for reference?

@GallVp GallVp added the awaiting-feedback Awaiting more information from the user label Oct 29, 2024
@GallVp GallVp removed their assignment Nov 20, 2024
@CeciliaDeng
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See Entrze
Uniprot IDs are useful too

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awaiting-feedback Awaiting more information from the user discussion needed Further discussion is needed enhancement New feature or request
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@CeciliaDeng @GallVp