New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Create AFQ tract profiles on scalars estimated in qsirecon #186

Open

mattcieslak opened this issue Nov 25, 2024 · 0 comments

Labels

Contributor

mattcieslak commented Nov 25, 2024

We currently have a lot of workflows that produce scalar maps (MAPMRI, NODDI, DKI, etc), but no way to get those into PyAFQ.

We need to figure out how to get these scalars into PyAFQ.

I think we have two ways we can do this, each with pros and cons.

Figure out how to have scalar maps be input into a full pyAFQ workflow.
Create an AFQBundleMapper that takes as input the outputs from a prior PyAFQ run and some scalar maps, then produces the tract profiles on those scalar maps.

I'm currently leaning towards 2, because I don't want to have to regenerate the bundles each time I want to map some scalars to them.

The text was updated successfully, but these errors were encountered:

mattcieslak added the enhancement label

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment