e2e-slurm.yml

---
name: Slurm

on: [push]
jobs:
    e2e-slurm:
      name: Test e2e with SLURM
      runs-on: ubuntu-latest
      steps:
        - name: checkout our repo
          uses: actions/checkout@v4
        - name: Install apptainer
          uses: eWaterCycle/setup-apptainer@v2
          with:
            apptainer-version: 1.1.2
        - name: Install Conda
          uses: conda-incubator/setup-miniconda@v3
          with:
            activate-environment: babs
            auto-update-conda: true
            python-version: 3.9
        - name: Conda info
          shell: bash -el {0}
          run: conda info
        - name: Install Babs
          shell: bash -el {0}
          run: ./tests/e2e-slurm/install-babs.sh
        - name: Execute e2e with SLURM
          shell: bash -el {0}
          run: ./tests/e2e-slurm/main.sh