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RF01739_subseqs_pfam_scan.txt
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RF01739_subseqs_pfam_scan.txt
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# pfam_scan.pl, run at Wed Aug 2 14:57:08 2017
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry ([email protected]),
# Rob Finn ([email protected])
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see <http://www.gnu.org/licenses/>.
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /home/wrightp/gifA_gifB_RF01739_RF01704/RF01739_all_translated.fa
# searching against: ./Pfam-A.hmm, with cut off --cut_ga
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
# <seq id> <alignment start> <alignment end> <envelope start> <envelope end> <hmm acc> <hmm name> <type> <hmm start> <hmm end> <hmm length> <bit score> <E-value> <significance> <clan>
NC_019689.1_Pleurocapsa_sp._PCC_7327_complete_genome_1_2 12 68 12 68 PF14105.5 DUF4278 Family 1 56 56 67.9 7.1e-19 1 No_clan
NC_019780.1_Dactylococcopsis_salina_PCC_8305_complete_genome_2_1 11 67 11 67 PF14105.5 DUF4278 Family 1 56 56 74.5 6.1e-21 1 No_clan
NC_019680.1_Synechococcus_sp._PCC_6312_complete_genome_11_1 12 48 12 55 PF14105.5 DUF4278 Family 1 36 56 37.4 2.4e-09 1 No_clan
NC_016640.1_Arthrospira_platensis_NIES-39_complete_genome_***_SEQUENCING_IN_PROGRESS_***_12_1 14 70 14 70 PF14105.5 DUF4278 Family 1 56 56 69.9 1.7e-19 1 No_clan
NC_019738.1_Microcoleus_sp._PCC_7113_complete_genome_13_1 12 68 12 68 PF14105.5 DUF4278 Family 1 56 56 77.6 6.5e-22 1 No_clan
NC_007776.1_Synechococcus_sp._JA-2-3B'a(2-13)_complete_genome_16_1 27 82 27 83 PF14105.5 DUF4278 Family 1 55 56 52.0 6.4e-14 1 No_clan
NC_019703.1_Geitlerinema_sp._PCC_7407_complete_genome_22_3 13 71 13 71 PF14105.5 DUF4278 Family 1 56 56 70.2 1.3e-19 1 No_clan
NC_009925.1_Acaryochloris_marina_MBIC11017_complete_genome_24_1 13 69 13 69 PF14105.5 DUF4278 Family 1 56 56 74.1 8.4e-21 1 No_clan
NC_019678.1_Rivularia_sp._PCC_7116_complete_genome_27_1 14 70 14 70 PF14105.5 DUF4278 Family 1 56 56 65.9 2.9e-18 1 No_clan
NC_009925.1_Acaryochloris_marina_MBIC11017_complete_genome_30_3 11 66 10 66 PF14105.5 DUF4278 Family 2 56 56 49.6 3.8e-13 1 No_clan
NC_023033.1_Thermosynechococcus_sp._NK55_genome_31_3 15 69 14 76 PF14105.5 DUF4278 Family 2 56 56 51.5 9.3e-14 1 No_clan
NC_019693.1_Oscillatoria_acuminata_PCC_6304_complete_genome_38_1 155 194 155 198 PF05598.10 DUF772 Domain 1 40 73 26.0 6.5e-06 1 No_clan
NC_019683.1_Leptolyngbya_sp._PCC_7376_complete_genome_39_2 13 69 13 69 PF14105.5 DUF4278 Family 1 56 56 57.7 1.1e-15 1 No_clan
NC_019683.1_Leptolyngbya_sp._PCC_7376_complete_genome_41_2 13 69 13 69 PF14105.5 DUF4278 Family 1 56 56 52.5 4.5e-14 1 No_clan
NC_006576.1_Synechococcus_elongatus_PCC_6301_DNA_complete_genome_44_3 12 54 12 104 PF14105.5 DUF4278 Family 1 42 56 36.0 6.3e-09 1 No_clan
NZ_CP006471.1_Synechococcus_sp._UTEX_2973_complete_genome_46_3 12 54 12 104 PF14105.5 DUF4278 Family 1 42 56 36.0 6.3e-09 1 No_clan
NC_000911.1_Synechocystis_sp._PCC_6803_DNA_complete_genome_5_1 12 67 12 68 PF14105.5 DUF4278 Family 1 55 56 64.0 1.1e-17 1 No_clan
NZ_CP007542.1_Synechocystis_sp._PCC_6714_complete_genome_6_1 12 66 12 68 PF14105.5 DUF4278 Family 1 54 56 63.3 1.9e-17 1 No_clan
NC_019779.1_Halothece_sp._PCC_7418_complete_genome_7_1 13 69 13 69 PF14105.5 DUF4278 Family 1 56 56 73.3 1.5e-20 1 No_clan
NC_019745.1_Gloeocapsa_sp._PCC_7428_complete_genome_9_1 17 73 17 73 PF14105.5 DUF4278 Family 1 56 56 64.5 8.4e-18 1 No_clan
NC_019695.1_Chroococcidiopsis_thermalis_PCC_7203_complete_genome_10_3 21 77 21 77 PF14105.5 DUF4278 Family 1 56 56 67.3 1.1e-18 1 No_clan
NC_004113.1_Thermosynechococcus_elongatus_BP-1_chromosome_complete_genome_15_1 16 70 15 70 PF14105.5 DUF4278 Family 2 56 56 55.0 7.3e-15 1 No_clan
NC_010546.1_Cyanothece_sp._ATCC_51142_circular_chromosome_complete_sequence_17_2 14 66 14 66 PF14105.5 DUF4278 Family 1 56 56 52.0 6.7e-14 1 No_clan
NC_007775.1_Synechococcus_sp._JA-3-3Ab_complete_genome_19_3 32 88 32 88 PF14105.5 DUF4278 Family 1 56 56 57.1 1.7e-15 1 No_clan
NC_019703.1_Geitlerinema_sp._PCC_7407_complete_genome_20_1 15 71 15 71 PF14105.5 DUF4278 Family 1 56 56 66.2 2.4e-18 1 No_clan
NC_019680.1_Synechococcus_sp._PCC_6312_complete_genome_21_1 15 70 15 70 PF14105.5 DUF4278 Family 1 56 56 53.0 3.2e-14 1 No_clan
NC_004113.1_Thermosynechococcus_elongatus_BP-1_chromosome_complete_genome_23_3 18 72 17 72 PF14105.5 DUF4278 Family 2 56 56 57.0 1.8e-15 1 No_clan
NC_023033.1_Thermosynechococcus_sp._NK55_genome_26_3 18 72 17 72 PF14105.5 DUF4278 Family 2 56 56 60.1 2e-16 1 No_clan
NC_019693.1_Oscillatoria_acuminata_PCC_6304_complete_genome_29_1 14 69 14 69 PF14105.5 DUF4278 Family 1 55 56 69.4 2.3e-19 1 No_clan
NC_007776.1_Synechococcus_sp._JA-2-3B'a(2-13)_complete_genome_33_2 27 83 27 83 PF14105.5 DUF4278 Family 1 56 56 50.7 1.7e-13 1 No_clan
NC_011726.1_Cyanothece_sp._PCC_8801_complete_genome_35_2 179 199 179 200 PF11210.7 DUF2996 Family 1 21 121 24.7 2.3e-05 1 No_clan
NC_019701.1_Pseudanabaena_sp._PCC_7367_complete_genome_37_2 31 85 31 86 PF14105.5 DUF4278 Family 1 54 56 55.3 5.9e-15 1 No_clan
NC_019693.1_Oscillatoria_acuminata_PCC_6304_complete_genome_43_2 14 71 14 71 PF14105.5 DUF4278 Family 1 56 56 65.6 3.7e-18 1 No_clan
NC_007604.1_Synechococcus_elongatus_PCC_7942_complete_genome_45_1 13 55 13 105 PF14105.5 DUF4278 Family 1 42 56 36.0 6.3e-09 1 No_clan
NC_008312.1_Trichodesmium_erythraeum_IMS101_complete_genome_47_2 11 67 11 81 PF14105.5 DUF4278 Family 1 56 56 55.3 6e-15 1 No_clan