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RF01704_subseqs_pfam_scan.txt
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RF01704_subseqs_pfam_scan.txt
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# pfam_scan.pl, run at Wed Aug 2 14:59:14 2017
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry ([email protected]),
# Rob Finn ([email protected])
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see <http://www.gnu.org/licenses/>.
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /home/wrightp/gifA_gifB_RF01739_RF01704/RF01704_all_translated.fa
# searching against: ./Pfam-A.hmm, with cut off --cut_ga
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
# <seq id> <alignment start> <alignment end> <envelope start> <envelope end> <hmm acc> <hmm name> <type> <hmm start> <hmm end> <hmm length> <bit score> <E-value> <significance> <clan>
NC_005070.1_Synechococcus_sp._WH_8102_complete_genome_5_2 7 40 7 53 PF14105.5 DUF4278 Family 1 34 56 26.3 6.7e-06 1 No_clan
NC_007516.1_Synechococcus_sp._CC9605_complete_genome_7_3 96 126 90 127 PF07864.10 DUF1651 Family 43 73 74 33.2 4.6e-08 1 No_clan
NC_005070.1_Synechococcus_sp._WH_8102_complete_genome_8_1 149 200 148 200 PF07466.10 DUF1517 Family 2 61 288 25.0 8.4e-06 1 No_clan
NC_005070.1_Synechococcus_sp._WH_8102_complete_genome_10_1 9 64 8 64 PF14105.5 DUF4278 Family 2 56 56 45.3 8.2e-12 1 No_clan
NC_007516.1_Synechococcus_sp._CC9605_complete_genome_14_2 9 59 8 80 PF14105.5 DUF4278 Family 2 56 56 31.2 2e-07 1 No_clan
NC_005070.1_Synechococcus_sp._WH_8102_complete_genome_19_1 9 59 8 59 PF14105.5 DUF4278 Family 2 56 56 40.0 3.7e-10 1 No_clan
NC_007513.1_Synechococcus_sp._CC9902_complete_genome_21_2 6 42 6 51 PF14105.5 DUF4278 Family 1 38 56 25.9 9.3e-06 1 No_clan
NC_005070.1_Synechococcus_sp._WH_8102_complete_genome_23_2 9 59 8 59 PF14105.5 DUF4278 Family 2 56 56 35.5 9.5e-09 1 No_clan
NC_007513.1_Synechococcus_sp._CC9902_complete_genome_26_1 9 60 8 60 PF14105.5 DUF4278 Family 2 56 56 38.2 1.3e-09 1 No_clan
NC_007513.1_Synechococcus_sp._CC9902_complete_genome_36_2 9 60 8 60 PF14105.5 DUF4278 Family 2 56 56 33.9 2.8e-08 1 No_clan
NC_007516.1_Synechococcus_sp._CC9605_complete_genome_38_2 8 58 7 58 PF14105.5 DUF4278 Family 2 56 56 42.9 4.5e-11 1 No_clan
NC_007516.1_Synechococcus_sp._CC9605_complete_genome_38_3 127 199 127 199 PF07864.10 DUF1651 Family 1 74 74 75.1 3.9e-21 1 No_clan
NZ_CP011941.1_Synechococcus_sp._WH_8020_genome_41_2 6 39 6 44 PF14105.5 DUF4278 Family 1 33 56 28.0 2.1e-06 1 No_clan
NC_005042.1_Prochlorococcus_marinus_subsp._marinus_str._CCMP1375_complete_genome_1_3 6 40 6 47 PF14105.5 DUF4278 Family 1 36 56 33.3 4.6e-08 1 No_clan
NC_007516.1_Synechococcus_sp._CC9605_complete_genome_2_3 7 44 7 58 PF14105.5 DUF4278 Family 1 38 56 25.3 1.4e-05 1 No_clan
NC_009482.1_Synechococcus_sp._RCC307_genomic_DNA_sequence_3_3 7 39 7 51 PF14105.5 DUF4278 Family 1 34 56 30.2 4.1e-07 1 No_clan
NZ_CP006270.1_Synechococcus_sp._KORDI-49_complete_genome_4_3 10 59 8 59 PF14105.5 DUF4278 Family 3 56 56 33.9 2.9e-08 1 No_clan
NC_008819.1_Prochlorococcus_marinus_str._NATL1A_complete_genome_6_2 7 50 7 56 PF14105.5 DUF4278 Family 1 45 56 38.3 1.3e-09 1 No_clan
NC_008816.1_Prochlorococcus_marinus_str._AS9601_complete_genome_11_1 7 39 7 50 PF14105.5 DUF4278 Family 1 34 56 32.6 7.4e-08 1 No_clan
NZ_CP007753.1_Prochlorococcus_sp._MIT_0604_complete_genome_12_2 7 38 7 50 PF14105.5 DUF4278 Family 1 33 56 32.2 9.8e-08 1 No_clan
NZ_CP011941.1_Synechococcus_sp._WH_8020_genome_13_3 8 61 7 61 PF14105.5 DUF4278 Family 2 56 56 38.2 1.3e-09 1 No_clan
NC_007335.2_Prochlorococcus_marinus_str._NATL2A_complete_genome_15_1 10 62 9 62 PF14105.5 DUF4278 Family 2 56 56 33.6 3.6e-08 1 No_clan
NC_007335.2_Prochlorococcus_marinus_str._NATL2A_complete_genome_16_2 7 50 7 56 PF14105.5 DUF4278 Family 1 45 56 40.5 2.5e-10 1 No_clan
NC_008816.1_Prochlorococcus_marinus_str._AS9601_complete_genome_20_1 161 199 154 200 PF01135.18 PCMT Family 71 109 210 27.7 1.9e-06 1 CL0063
NC_008816.1_Prochlorococcus_marinus_str._AS9601_complete_genome_20_2 9 61 8 61 PF14105.5 DUF4278 Family 2 56 56 42.5 6e-11 1 No_clan
NZ_CP007753.1_Prochlorococcus_sp._MIT_0604_complete_genome_22_2 9 61 8 61 PF14105.5 DUF4278 Family 2 56 56 42.5 6e-11 1 No_clan
NZ_CP007753.1_Prochlorococcus_sp._MIT_0604_complete_genome_22_3 160 199 153 200 PF01135.18 PCMT Family 71 110 210 28.1 1.4e-06 1 CL0063
NC_008819.1_Prochlorococcus_marinus_str._NATL1A_complete_genome_24_1 10 62 9 62 PF14105.5 DUF4278 Family 2 56 56 33.6 3.6e-08 1 No_clan
NC_005072.1_Prochlorococcus_marinus_MED4_complete_genome_25_1 7 49 7 56 PF14105.5 DUF4278 Family 1 44 56 34.8 1.5e-08 1 No_clan
NC_005070.1_Synechococcus_sp._WH_8102_complete_genome_27_3 6 59 6 59 PF14105.5 DUF4278 Family 1 56 56 40.9 1.9e-10 1 No_clan
NZ_CP006270.1_Synechococcus_sp._KORDI-49_complete_genome_28_3 6 48 6 56 PF14105.5 DUF4278 Family 1 44 56 34.7 1.7e-08 1 No_clan
NC_007516.1_Synechococcus_sp._CC9605_complete_genome_30_2 9 59 8 59 PF14105.5 DUF4278 Family 2 56 56 34.0 2.7e-08 1 No_clan
NC_005072.1_Prochlorococcus_marinus_MED4_complete_genome_31_2 9 61 8 61 PF14105.5 DUF4278 Family 2 56 56 43.3 3.3e-11 1 No_clan
NC_005072.1_Prochlorococcus_marinus_MED4_complete_genome_31_3 160 199 153 200 PF01135.18 PCMT Family 71 110 210 28.2 1.4e-06 1 CL0063
NC_005042.1_Prochlorococcus_marinus_subsp._marinus_str._CCMP1375_complete_genome_32_2 9 59 8 59 PF14105.5 DUF4278 Family 2 56 56 35.4 9.6e-09 1 No_clan
NZ_CP006270.1_Synechococcus_sp._KORDI-49_complete_genome_48_3 54 89 36 100 PF14105.5 DUF4278 Family 2 37 56 25.7 1.1e-05 1 No_clan
NC_007513.1_Synechococcus_sp._CC9902_complete_genome_51_3 31 83 29 83 PF14105.5 DUF4278 Family 3 56 56 27.3 3.3e-06 1 No_clan
NC_007335.2_Prochlorococcus_marinus_str._NATL2A_complete_genome_55_3 9 59 7 59 PF14105.5 DUF4278 Family 3 56 56 35.8 7.7e-09 1 No_clan
NC_008819.1_Prochlorococcus_marinus_str._NATL1A_complete_genome_56_3 9 59 7 59 PF14105.5 DUF4278 Family 3 56 56 34.9 1.4e-08 1 No_clan
NC_007335.2_Prochlorococcus_marinus_str._NATL2A_complete_genome_65_3 108 151 91 151 PF11302.7 DUF3104 Family 28 71 71 49.7 2.1e-13 1 CL0010
NC_008819.1_Prochlorococcus_marinus_str._NATL1A_complete_genome_66_3 108 151 91 151 PF11302.7 DUF3104 Family 28 71 71 49.7 2.1e-13 1 CL0010