From 5f0b2b60b30a186f92df25b22091dab23ce538ee Mon Sep 17 00:00:00 2001 From: Chris Saunders Date: Wed, 16 Oct 2024 09:21:26 -0700 Subject: [PATCH] Update to v0.12.6 --- CHANGELOG.md | 6 ++++++ Cargo.lock | 2 +- Cargo.toml | 2 +- LICENSE-THIRDPARTY.json | 2 +- src/cli/discover.rs | 2 +- 5 files changed, 10 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 5ddf7db..5699f75 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,11 @@ # Change Log +## v0.12.6 - 2024-10-15 + +### Fixed + +- Fix discover mode input path canonicalization (reversed flag logic) + ## v0.12.5 - 2024-10-14 ### Added diff --git a/Cargo.lock b/Cargo.lock index 76b6db1..01ebcd3 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -1618,7 +1618,7 @@ dependencies = [ [[package]] name = "sawfish" -version = "0.12.5" +version = "0.12.6" dependencies = [ "approx", "bio", diff --git a/Cargo.toml b/Cargo.toml index 8dbaa60..19493f7 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "sawfish" -version = "0.12.5" +version = "0.12.6" authors = ["Chris Saunders "] description = "Structural variant analysis for mapped PacBio HiFi reads" edition = "2021" diff --git a/LICENSE-THIRDPARTY.json b/LICENSE-THIRDPARTY.json index 062de99..d03d494 100644 --- a/LICENSE-THIRDPARTY.json +++ b/LICENSE-THIRDPARTY.json @@ -1576,7 +1576,7 @@ }, { "name": "sawfish", - "version": "0.12.5", + "version": "0.12.6", "authors": "Chris Saunders ", "repository": null, "license": null, diff --git a/src/cli/discover.rs b/src/cli/discover.rs index a5219cb..81aaa4e 100644 --- a/src/cli/discover.rs +++ b/src/cli/discover.rs @@ -224,7 +224,7 @@ pub fn validate_and_fix_discovery_settings( } let mut settings = settings; - if settings.disable_path_canonicalization { + if !settings.disable_path_canonicalization { settings.ref_filename = canonicalize_string_path(&settings.ref_filename); settings.bam_filename = canonicalize_string_path(&settings.bam_filename);