From 62c6adbabd9a0e29e9a2f9bb5a10749d46a90b4a Mon Sep 17 00:00:00 2001
From: Armin Toepfer <atoepfer@pacificbiosciences.com>
Date: Tue, 14 Mar 2023 12:32:47 +0100
Subject: [PATCH] Add `bam2fastx` usage

---
 README.md | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/README.md b/README.md
index e8eac35..88d1381 100644
--- a/README.md
+++ b/README.md
@@ -28,6 +28,15 @@ that those binaries are longer from `pbbam` directly.
 
 ## Usage
 
+### `bam2fastx`
+Both tools have an identical interface and take BAM and/or DataSet files as input. Examples:
+
+```
+bam2fasta -o projectName m54008_160330_053509.subreads.bam
+bam2fastq -o myEcoliRuns m54008_160330_053509.subreads.bam m54008_160331_235636.subreads.bam
+bam2fasta -o myHumanGenome m54012_160401_000001.subreadset.xml
+```
+
 ### `zmwfilter`
 zmwfilter provides a simple utility for filtering PacBio BAM data on ZMW ID(s), via either an "include-list" or "exclude-list".