diff --git a/hifisomatic.wdl b/hifisomatic.wdl
index eeaa125..ed4aa80 100644
--- a/hifisomatic.wdl
+++ b/hifisomatic.wdl
@@ -507,7 +507,7 @@ workflow hifisomatic {
           input:
             referenceName = patient + ".normal",
             tumorName = patient + ".tumor",
-            outputDir = "./purple",
+            outputDir = "purple",
             amberOutput = Amber.outputs,
             cobaltOutput = Cobalt.outputs,
             referenceFasta = ref_fasta,
@@ -522,7 +522,7 @@ workflow hifisomatic {
           input:
             referenceName = patient + ".normal",
             tumorName = patient + ".tumor",
-            outputDir = "./purple",
+            outputDir = "purple",
             amberOutput = Amber.outputs,
             cobaltOutput = Cobalt.outputs,
             somaticVcf = select_first([gather_ClairS.output_vcf]),
diff --git a/tasks/alignment.wdl b/tasks/alignment.wdl
index e5e05cb..fb5faf5 100644
--- a/tasks/alignment.wdl
+++ b/tasks/alignment.wdl
@@ -29,7 +29,7 @@ task Align {
     --sort -j ~{threads} \
     --unmapped \
     --preset HIFI \
-    --log-level INFO --log-file pbmm2.log
+    --log-level DEBUG --log-file pbmm2.log
   >>>
 
   output {
@@ -39,7 +39,7 @@ task Align {
   }
 
   runtime {
-    docker: "quay.io/biocontainers/pbmm2:1.12.0--h9ee0642_0"
+    docker: "quay.io/biocontainers/pbmm2:1.13.1--h9ee0642_0"
     cpu: threads
     memory: "~{threads * 4} GB"
     disk: file_size + " GB"
@@ -116,4 +116,4 @@ task IndexBam {
     maxRetries: 2
     preemptible: 1
   }
-}
\ No newline at end of file
+}
diff --git a/tasks/annotation.wdl b/tasks/annotation.wdl
index 3106808..8fca66c 100644
--- a/tasks/annotation.wdl
+++ b/tasks/annotation.wdl
@@ -151,4 +151,4 @@ task chord_hrd {
         maxRetries: 2
         preemptible: 1
     }
-}
\ No newline at end of file
+}
diff --git a/tasks/clonality.wdl b/tasks/clonality.wdl
index d2a4fb6..9181041 100644
--- a/tasks/clonality.wdl
+++ b/tasks/clonality.wdl
@@ -8,7 +8,7 @@ task Amber {
         String tumorName
         File tumorBam
         File tumorBamIndex
-        String outputDir = "./amber"
+        String outputDir = "amber"
         File ensembl_data_dir_tarball
         File referenceFasta
         File referenceFastaFai
@@ -76,7 +76,7 @@ task Cobalt {
         File referenceFasta
         File referenceFastaFai
         File referenceFastaDict
-        String outputDir = "./cobalt"
+        String outputDir = "cobalt"
         File ensembl_data_dir_tarball
         Int threads
     }
@@ -132,7 +132,7 @@ task Purple {
     input {
         String referenceName
         String tumorName
-        String outputDir = "./purple"
+        String outputDir = "purple"
         Array[File]+ amberOutput
         Array[File]+ cobaltOutput
         File? somaticVcf
diff --git a/tasks/deepsomatic.wdl b/tasks/deepsomatic.wdl
index dc22dd6..7b32442 100644
--- a/tasks/deepsomatic.wdl
+++ b/tasks/deepsomatic.wdl
@@ -315,4 +315,4 @@ task correct_vcf {
         maxRetries: 2
         preemptible: 1
     }
-}
\ No newline at end of file
+}
diff --git a/tasks/phasing.wdl b/tasks/phasing.wdl
index 4ce5ed4..fe8594c 100644
--- a/tasks/phasing.wdl
+++ b/tasks/phasing.wdl
@@ -45,7 +45,7 @@ task hiphase {
         docker: "quay.io/pacbio/hiphase@sha256:c46c8493be8b308c0433441cbafcc1b6ac999dfa6e85001d466ebd551c4a8cf0"
         cpu: threads
         memory: "~{threads * 6} GB"
-        disk: file_size
+        disk: file_size + " GB"
         maxRetries: 2
         preemptible: 1
     }
@@ -65,7 +65,7 @@ task hiphase_with_somatic {
         Int threads
     }
 
-    Float file_size = ceil(size(bam, "GB") + size(vcf, "GB") + size(ref_fasta, "GB") + 20)
+    Float file_size = ceil(size(bam, "GB") + size(vcf, "GB") + size(ref_fasta, "GB") + 100)
 
     command <<<
     set -euxo pipefail
@@ -101,7 +101,7 @@ task hiphase_with_somatic {
         docker: "quay.io/pacbio/hiphase@sha256:c46c8493be8b308c0433441cbafcc1b6ac999dfa6e85001d466ebd551c4a8cf0"
         cpu: threads
         memory: "~{threads * 6} GB"
-        disk: file_size
+        disk: file_size + " GB"
         maxRetries: 2
         preemptible: 1
     }
@@ -171,7 +171,7 @@ task longphase_with_somatic {
         docker: "quay.io/pacbio/longphase@sha256:2d57c35da90fc74f56574c439e1a44f74c7f787f3812de3c402cf9206c9d4be3"
         cpu: threads
         memory: "~{threads * 6} GB"
-        disk: file_size
+        disk: file_size + " GB"
         maxRetries: 2
         preemptible: 1
     }