From c4f26ab7bbb3ff9b78bb79bc8bf7bb7455f0747c Mon Sep 17 00:00:00 2001
From: William Rowell <wrowell@pacificbiosciences.com>
Date: Wed, 18 Oct 2023 11:32:28 -0700
Subject: [PATCH] pass shard index to pbsv_call

---
 workflows/sample_analysis/sample_analysis.wdl | 1 +
 1 file changed, 1 insertion(+)

diff --git a/workflows/sample_analysis/sample_analysis.wdl b/workflows/sample_analysis/sample_analysis.wdl
index 41621cf4..1f4f1a8d 100644
--- a/workflows/sample_analysis/sample_analysis.wdl
+++ b/workflows/sample_analysis/sample_analysis.wdl
@@ -78,6 +78,7 @@ workflow sample_analysis {
 				reference = reference.fasta.data,
 				reference_index = reference.fasta.data_index,
 				reference_name = reference.name,
+				shard_index = shard_index,
 				regions = region_set,
 				runtime_attributes = default_runtime_attributes
 		}