From 2db7697431652b5cbee24b2aaaf420ccb74a36e1 Mon Sep 17 00:00:00 2001 From: Khi Pin Chua Date: Tue, 14 Feb 2023 08:09:40 +0000 Subject: [PATCH] bug fix with process conda environment (forgot to use) --- main.nf | 3 +++ 1 file changed, 3 insertions(+) diff --git a/main.nf b/main.nf index 8449760..28d4a2d 100644 --- a/main.nf +++ b/main.nf @@ -349,6 +349,7 @@ process collect_QC_skip_cutadapt { process prepare_qiime2_manifest { label 'cpu_def' publishDir "$params.outdir/results/", mode: params.publish_dir_mode + conda (params.enable_conda ? "$projectDir/env/pb-16s-pbtools.yml" : null) container "kpinpb/pb-16s-nf-tools:latest" input: @@ -380,6 +381,7 @@ process prepare_qiime2_manifest { process prepare_qiime2_manifest_skip_cutadapt { label 'cpu_def' publishDir "$params.outdir/results/", mode: params.publish_dir_mode + conda (params.enable_conda ? "$projectDir/env/pb-16s-pbtools.yml" : null) container "kpinpb/pb-16s-nf-tools:latest" input: @@ -436,6 +438,7 @@ process import_qiime2 { // Merge sample manifest file for final vis purpose later on process merge_sample_manifest { label 'cpu_def' + conda (params.enable_conda ? "$projectDir/env/pb-16s-pbtools.yml" : null) container "kpinpb/pb-16s-nf-tools:latest" input: