From 030f1bcb0da61594b77d538f4b97213461d2d622 Mon Sep 17 00:00:00 2001 From: proteinosome Date: Thu, 28 Jul 2022 17:57:49 +0800 Subject: [PATCH] Update main.nf Revert GTDB to r202 for naive bayes temporarily --- main.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/main.nf b/main.nf index f77139e..165dcb9 100644 --- a/main.nf +++ b/main.nf @@ -81,7 +81,7 @@ def helpMessage() { params.help = false if (params.help) exit 0, helpMessage() params.version = false -version = "0.3" +version = "0.2" if (params.version) exit 0, log.info("$version") params.download_db = false params.skip_primer_trim = false @@ -127,7 +127,7 @@ params.vsearch_db = "$projectDir/databases/GTDB_ssu_all_r207.qza" params.vsearch_tax = "$projectDir/databases/GTDB_ssu_all_r207.taxonomy.qza" params.silva_db = "$projectDir/databases/silva_nr99_v138.1_wSpecies_train_set.fa.gz" params.refseq_db = "$projectDir/databases/RefSeq_16S_6-11-20_RDPv16_fullTaxo.fa.gz" -params.gtdb_db = "$projectDir/databases/GTDB_bac120_arc53_ssu_r207_fullTaxo.fa.gz" +params.gtdb_db = "$projectDir/databases/GTDB_bac120_arc122_ssu_r202_fullTaxo.fa.gz" params.maxreject = 100 params.maxaccept = 100 params.rarefaction_depth = null @@ -935,7 +935,7 @@ process download_db { echo "Downloading SILVA sequences for VSEARCH..." wget -N --content-disposition 'https://zenodo.org/record/4587955/files/silva_nr99_v138.1_wSpecies_train_set.fa.gz?download=1' echo "Downloading GTDB sequences for VSEARCH..." - wget -N --content-disposition 'https://zenodo.org/record/6655692/files/GTDB_bac120_arc53_ssu_r207_fullTaxo.fa.gz?download=1' + wget -N --content-disposition 'https://zenodo.org/record/4735821/files/GTDB_bac120_arc122_ssu_r202_fullTaxo.fa.gz?download=1' echo "Downloading RefSeq + RDP sequences for VSEARCH..." wget -N --content-disposition 'https://zenodo.org/record/4735821/files/RefSeq_16S_6-11-20_RDPv16_fullTaxo.fa.gz?download=1'