From f7707451934bb29d980504374bcf553bb7975fb6 Mon Sep 17 00:00:00 2001 From: Laurent Gil Date: Fri, 15 Dec 2023 11:21:01 +0000 Subject: [PATCH 1/2] Add more sources for the harmonized scoring file validator --- pgscatalog_utils/validate/schemas.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pgscatalog_utils/validate/schemas.py b/pgscatalog_utils/validate/schemas.py index 7997b95..cb330d8 100644 --- a/pgscatalog_utils/validate/schemas.py +++ b/pgscatalog_utils/validate/schemas.py @@ -50,7 +50,7 @@ VALID_FILE_EXTENSIONS = [".txt", ".txt.gz"] # For the harmonized files -VALID_SOURCES = ['ENSEMBL','Author-reported'] +VALID_SOURCES = ['ENSEMBL','Author-reported','liftover','Unknown'] # VALID_CODES = ['5','4','3','1','0','-1','-4','-5'] BUILD_LIST = ['GRCh37','GRCh38'] From 2393e9ac193ff8472c7c014fe376c114e3ef8b79 Mon Sep 17 00:00:00 2001 From: Benjamin Wingfield Date: Thu, 14 Mar 2024 12:45:39 +0000 Subject: [PATCH 2/2] bump patch version --- pgscatalog_utils/__init__.py | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/pgscatalog_utils/__init__.py b/pgscatalog_utils/__init__.py index 7225152..43a1e95 100644 --- a/pgscatalog_utils/__init__.py +++ b/pgscatalog_utils/__init__.py @@ -1 +1 @@ -__version__ = "0.5.2" +__version__ = "0.5.3" diff --git a/pyproject.toml b/pyproject.toml index 65ec28d..d7a2ef2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "pgscatalog_utils" -version = "0.5.2" +version = "0.5.3" description = "Utilities for working with PGS Catalog API and scoring files" homepage = "https://github.com/PGScatalog/pgscatalog_utils" authors = ["Benjamin Wingfield ", "Samuel Lambert ", "Laurent Gil "]