pyproject.toml

[tool.poetry]
name = "pgscatalog_utils"
version = "0.5.3"
description = "Utilities for working with PGS Catalog API and scoring files"
homepage = "https://github.com/PGScatalog/pgscatalog_utils"
authors = ["Benjamin Wingfield <bwingfield@ebi.ac.uk>", "Samuel Lambert <sl925@medschl.cam.ac.uk>", "Laurent Gil <lg10@sanger.ac.uk>"]
license = "Apache-2.0"
readme = "README.md"

[tool.poetry.scripts]
combine_scorefiles = "pgscatalog_utils.scorefile.combine_scorefiles:combine_scorefiles"
download_scorefiles = "pgscatalog_utils.download.download_scorefile:download_scorefile"
match_variants = "pgscatalog_utils.match.match_variants:match_variants"
combine_matches = "pgscatalog_utils.match.combine_matches:combine_matches"
aggregate_scores = "pgscatalog_utils.aggregate.aggregate_scores:aggregate_scores"
validate_scorefiles = "pgscatalog_utils.validate.validate_scorefile:validate_scorefile"
relabel_ids = "pgscatalog_utils.relabel.relabel_ids:relabel_ids"
ancestry_analysis = "pgscatalog_utils.ancestry.ancestry_analysis:ancestry_analysis"

[tool.poetry.dependencies]
python = "^3.10"
numpy = "^1.23.3"
pandas = "^1.4.3"
pandas-schema = "^0.3.6"
pyliftover = "^0.4"
requests = "^2.28.1"
jq = "^1.2.2"
polars = "^0.15.0"
zstandard = "^0.18.0"
pgzip = "^0.3.2"
scikit-learn = "^1.2.1"
pre-commit = "^3.5.0"
pyarrow = "^14.0.1"

[tool.poetry.group.dev.dependencies]
jupyter = "^1.0.0"
memory-profiler = "^0.60.0"
pytest = "^7.2.2"
pytest-cov = "^4.0.0"
matplotlib = "^3.7.1"
seaborn = "^0.12.2"

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"

[tool.pytest.ini_options]
addopts = "--doctest-modules"