diff --git a/Contents b/Contents index 2a884ab..7c90450 100644 --- a/Contents +++ b/Contents @@ -5,32 +5,38 @@ app_service Application execution service. -assembly -An extensible framework for genome assembly. - - -awe_tools -admin tools for awe +genome_annotation -genome_annotation +p3_auth +authentication -handle_service -An application programming interface for managing files. This service -provides an AbstractHandle that can be used to reference data in different -stores. This deploys both the client and service. +p3_code +SEEDtk Fragment Shared with PATRIC -p3_auth -authentication +p3_core +Core library modules & scripts for PATRIC API integration p3_deployment Deployment tools for PATRIC. -p3_seed +seed_core +Core code exported from SEED CVS. + + +seed_gjo +Gary Olsen code exported from SEED CVS + + +seed_rast +RAST related code exported from SEED CVS + + +seed_svr typecomp diff --git a/Manifest b/Manifest index c7199c0..7c71638 100644 --- a/Manifest +++ b/Manifest @@ -1,11 +1,13 @@ Workspace df04f91ab52281da4dec491c847db0dfc2e14415 olsonanl/Workspace -app_service f5f6f368175ffb499476c8b11939c788ee0ea745 olsonanl/app_service -assembly 6bcecac2ba7de826d2a4625964b02c348e7ce4e9 olsonanl/assembly -awe_tools 1c68fbb660614bd78dc9b5f6be0c0ccd5420df2a olsonanl/awe_tools -genome_annotation 9288b249b199a45c531fc47060081be52b4d6151 olsonanl/genome_annotation -handle_service 76ec1dedf5c3ede31ea1435864c02eedaacd5f1c olsonanl/handle_service -p3_auth 7f5ef08031802625b4486de25e413e8009e8c30e olsonanl/p3_auth +app_service 7303cd28f8f2aadda79ef1722e705def240de289 olsonanl/app_service +genome_annotation d4509a6d6f9e9f13f908a28f2702c1e0e102c480 olsonanl/genome_annotation +p3_auth 0ff8139408bf764676aebc8075a289f5a2e4f92c olsonanl/p3_auth +p3_code 7594936fe218bf11902757e4d7e14fbab89d8c02 olsonanl/p3_code +p3_core 807536d6b1a56f6fe9ae743aed385b5fe31418fe PATRIC3/p3_core p3_deployment 1e48f035e99543198897bd52d7664990f2a27b5a olsonanl/p3_deployment -p3_seed 48a4a73f2659a0db75fb6a7169312ff974a415fe olsonanl/p3_seed -typecomp 87d655c4053d4d19086f0c27e70f5ec7868b99c3 olsonanl/typecomp -dev_container a1df36790aaf69551ad2f65399742ff262b8186a olsonanl/dev_container +seed_core db240db278c8b6eb26bd81cbc3800f43c5c7a901 theseed/seed_core +seed_gjo f368966662bd95668e1843d53f4e8413a82451a9 theseed/seed_gjo +seed_rast 66959f8611494fd75593911fb5d9579b8bfbce14 theseed/seed_rast +seed_svr c3006abd9c38e166f5a75deca65ae648fecbb0e0 theseed/seed_svr +typecomp cbd2afa26f06098169854ba31e5fcb0ae1e768c2 olsonanl/typecomp +dev_container 0f94b9d3a05eb6fbd3d8b9cd8d648481c388b595 olsonanl/dev_container diff --git a/distro.cfg b/distro.cfg index cc6c6df..afaa80d 100644 --- a/distro.cfg +++ b/distro.cfg @@ -4,7 +4,7 @@ target = [% target %] deploy-runtime = [% runtime %] -deploy-client = genome_annotation, p3_deployment, typecomp, Workspace, app_service, p3_seed, handle_service, awe_tools, p3_auth, assembly +deploy-client = genome_annotation, p3_deployment, typecomp, Workspace, app_service, p3_code, p3_core, seed_core, seed_gjo, seed_svr, seed_rast, p3_auth deploy-service = ;deploy-master = auth @@ -14,11 +14,6 @@ source-repo = olsonanl/dev_container [p3_deployment] source-repo = olsonanl/p3_deployment -[awe_tools] -source-repo = olsonanl/awe_tools -awe-url = [% awe_url %] -shock-url = [% shock_url %] - [app_service] source-repo = olsonanl/app_service ;source-repo = TheSEED/app_service @@ -43,28 +38,24 @@ nr-annotation-directory = /disks/kb/data/NR [p3_auth] source-repo = olsonanl/p3_auth -[p3_seed] -source-repo = olsonanl/p3_seed +[p3_code] +source-repo = olsonanl/p3_code + +[p3_core] +source-repo = PATRIC3/p3_core + +[seed_svr] +source-repo = theseed/seed_svr -[kmer_annotation_figfam] +[seed_core] +source-repo = theseed/seed_core -_service_name = KmerAnnotationByFigfam -kmer-data = /disks/kb/data/FIGfams -#kmer-ftp-site = ftp://ftp.theseed.org/misc/tmp -service-url = [% kmer_annotation_url %] +[seed_gjo] +source-repo = theseed/seed_gjo + +[seed_rast] +source-repo = theseed/seed_rast [typecomp] source-repo = olsonanl/typecomp -[assembly] -arast-url=http://tutorial.theseed.org/assembly -arast-auth-service = RAST -source-repo = olsonanl/assembly - -[handle_service] -source-repo = olsonanl/handle_service -self-url = [% handle_service_url %] -default-shock-server = [% shock_url %] -# the commit below is the latest on the p3_cli branch -source-commit-hash = 76ec1dedf5c3ede31ea1435864c02eedaacd5f1c -