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Faulty escaping of taxon-name strings into TNRS (eg, "Escherichia-Shigella") #101

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jimallman opened this issue Oct 8, 2015 · 1 comment
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Faulty escaping of taxon-name strings into TNRS (eg, "Escherichia-Shigella") #101

jimallman opened this issue Oct 8, 2015 · 1 comment
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@jimallman
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This was originally reported in opentree#488: Funniness in 'modified for mapping' taxon name entry. I'm closing that issue and creating this one, since @mtholder discovered problematic lucene escaping of submitted names in taxomachine. See the original issue above for some useful digging and analysis.

NOTE that the original symptom (a hyphenated taxon name is only found when "fuzzy matching" is enabled) is still happening on production.
@jimallman jimallman mentioned this issue Oct 8, 2015
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@jimallman jimallman added the bug label Oct 8, 2015
@jar398 jar398 mentioned this issue Dec 14, 2015
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@jimallman jimallman mentioned this issue Dec 17, 2015
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@snacktavish
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Just giving this a bump because I just ran into it! Names with dashes only map on fuzzy matching even when they are straight out of the taxonomy.tsv file, e.g. "Sordaria macrospora k-hell"

@jar398 jar398 mentioned this issue Feb 21, 2016
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@jimallman @snacktavish