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The phylesystem-api.opentreeoflife.org wiki document:

• the NexSON format
  • General information on NexSON tags.
  • the NexSON syntax
  • Annotations in NexSON page describes some proposed structures for embedding structured comments in the study NexSON blobs.
  • Example "data" response in NexSON 0.0.0 (also available in "raw" form at http://phylo.bio.ku.edu/ot/pp0.0.0.json . This form can be fetched from the API with http://devapi.opentreeoflife.org/v2/study/pg_10
• Developer notes on working with the phylesystem-api