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OpenTreeOfLife / opentree Public

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Jonathan A Rees edited this page Feb 6, 2014 · 30 revisions

Welcome to the opentree wiki!

Open Tree of Life APIs

Provenance UI thoughts

Open Tree Reference Taxonomy

https://github.com/OpenTreeOfLife/reference-taxonomy/wiki
Interim Taxonomy Patch Feature

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Toggle table of contents Pages 39

Home
Adding tips from trees to the taxonomy
Bulk TNRS (name resolution) tool
Caching results from common API calls
Conducting conflict analyses
Conflict and synthesis file formats
Curation interface requirements gathering
Document store requirements gathering
Getting information on trees that intersect with a clade of interest
Getting nexons newicks for sets of trees in a clade of interest
Getting sections of synth tree or taxonomy
Getting, installing, and working with peyotl
Installing a local curator and tree browser test server
Libraries for working with opentree in various languages (service bindings and wrappers, etc.)
Manual merge of curation data
Migration of web apps to Pyramid framework
Open Tree of Life APIs
Open Tree of Life APIs V1
Open Tree of Life APIs v3
OpenTree user accounts and GitHub
phylogenetic graphs
Phylografter user interviews
Proposed API changes 2014 08
Provenance UI thoughts
pseudo code supertree
Searching the taxonomy
Submitting phylogenies to Open Tree of Life
Suggested workflow using 'development' branch in opentree repo
supertree via ranked trees on a taxo scaffold
supertrees using tree ranking
Tree status in synthesis
Tutorials
Working with tree collections
| Editing studies (moved)
| GBIF backbone taxonomy wish list (moved)
| Interim taxonomy file format (moved)
| Interim taxonomy patch feature (moved)
| Open Tree Taxonomy moved
| Taxon addition project moved

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