From 16edd8a7b2706795da99d54deaa3d47397b2abbb Mon Sep 17 00:00:00 2001
From: skchronicles <kuhnsa3@gmail.com>
Date: Mon, 1 Jul 2024 15:25:41 -0400
Subject: [PATCH] Chore: Adding citation to documentation

---
 docs/index.md | 38 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

diff --git a/docs/index.md b/docs/index.md
index a926b35..2d5c064 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -3,6 +3,15 @@
   <h1 style="font-size: 250%">genome-seek 🔬</h1>
 
   <b><i>Whole Genome and Exome Clinical Sequencing Pipeline</i></b><br> 
+  <a href="https://doi.org/10.5281/zenodo.12586652">
+    <img src="https://zenodo.org/badge/DOI/10.5281/zenodo.12586652.svg" alt="DOI">
+  </a>
+  <a href="https://github.com/OpenOmics/genome-seek/releases">
+    <img alt="GitHub release" src="https://img.shields.io/github/v/release/OpenOmics/genome-seek?color=blue&include_prereleases">
+  </a>
+  <a href="https://hub.docker.com/repository/docker/skchronicles/genome-seek">
+    <img alt="Docker Pulls" src="https://img.shields.io/docker/pulls/skchronicles/genome-seek">
+  </a><br>
   <a href="https://github.com/OpenOmics/genome-seek/actions/workflows/main.yaml">
     <img alt="tests" src="https://github.com/OpenOmics/genome-seek/workflows/tests/badge.svg">
   </a>
@@ -71,6 +80,35 @@ For more information about issues or troubleshooting a problem, please check out
 
 This site is a living document, created for and by members like you. genome-seek is maintained by the members of NCBR and is improved by continuous feedback! We encourage you to contribute new content and make improvements to existing content via pull requests to our [GitHub repository :octicons-heart-fill-24:{ .heart }](https://github.com/OpenOmics/genome-seek).
 
+## Citation
+
+If you use this software, please cite it as below:  
+
+=== "BibTex"
+
+    ```
+    @software{Kuhn_OpenOmics_genome-seek_2024,
+      author       = {Kuhn, Skyler and
+                      Lack, Justin and
+                      Talsania, Keyur},
+      title        = {OpenOmics/genome-seek: v0.9.0},
+      month        = jun,
+      year         = 2024,
+      publisher    = {Zenodo},
+      version      = {v0.9.0},
+      doi          = {10.5281/zenodo.12586652},
+      url          = {https://doi.org/10.5281/zenodo.12586652}
+    }
+    ```
+
+=== "APA"
+
+    ```
+    Kuhn, S., Lack, J., & Talsania, K. (2024). OpenOmics/genome-seek: v0.9.0 (v0.9.0). Zenodo. https://doi.org/10.5281/zenodo.12586652
+    ```
+
+For more citation style options, please visit the pipeline's [Zenodo page](https://doi.org/10.5281/zenodo.12586652).
+
 ## References
 
 <sup>**1.**  Kurtzer GM, Sochat V, Bauer MW (2017). Singularity: Scientific containers for mobility of compute. PLoS ONE 12(5): e0177459.</sup>