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Adding refs and rule for hmftools sage tests #238: Commit 21118eb pushed by skchronicles
September 25, 2024 21:19 52s main
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September 25, 2024 21:19 52s
Chore: Adding citation to documentation tests #237: Commit 16edd8a pushed by skchronicles
July 1, 2024 19:26 1m 2s main
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July 1, 2024 19:26 1m 2s
Chore: Adding Zenodo DOI, citation, and other badges. tests #236: Commit 36ca544 pushed by skchronicles
June 28, 2024 20:51 53s main
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June 28, 2024 20:51 53s
Adding step to check and enforce a maximum snakemake version tests #235: Commit c5f181c pushed by skchronicles
June 28, 2024 18:39 59s main
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June 28, 2024 18:39 59s
Bumping up minor version for new feature. tests #234: Commit 29d92ae pushed by skchronicles
June 27, 2024 20:37 53s main
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June 27, 2024 20:37 53s
Adding enumeration type uge for mode of execution. tests #233: Commit 38f7544 pushed by skchronicles
June 27, 2024 20:34 52s main
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June 27, 2024 20:34 52s
Adding new run sub-command cli options tests #232: Commit d89075a pushed by skchronicles
June 27, 2024 20:20 58s main
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June 27, 2024 20:20 58s
Updating rule all with new targets of GATK best-practices sub workflo… tests #231: Commit 42e5200 pushed by skchronicles
June 26, 2024 20:51 55s main
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June 26, 2024 20:51 55s
GenomicsDB directory should not exist tests #230: Commit 463aef1 pushed by skchronicles
June 21, 2024 13:57 53s main
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June 21, 2024 13:57 53s
Adding rule to merge chunked genotype refinement VCFs tests #229: Commit ce3085f pushed by skchronicles
June 20, 2024 21:11 52s main
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June 20, 2024 21:11 52s
Adding genotype refinement rule. tests #228: Commit 1173b0d pushed by skchronicles
June 20, 2024 19:34 54s main
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June 20, 2024 19:34 54s
Adding INDEL VQSR resources and rules. tests #227: Commit c21c80e pushed by skchronicles
June 20, 2024 16:15 56s main
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June 20, 2024 16:15 56s
Adding VQSR steps to filter SNPs tests #226: Commit 07310a4 pushed by skchronicles
June 18, 2024 20:12 55s main
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June 18, 2024 20:12 55s
Adding rule to create joint genotyped VCF for the cohort. tests #225: Commit f65fe3c pushed by skchronicles
June 18, 2024 18:24 54s main
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June 18, 2024 18:24 54s
Adding rule to perform joint genotyping on 1 or more samples. tests #224: Commit 487222a pushed by skchronicles
June 17, 2024 19:35 53s main
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June 17, 2024 19:35 53s
Adding rule to convert gvcf to tiledb for joint genotyping tests #223: Commit 68694f2 pushed by skchronicles
June 17, 2024 18:51 58s main
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June 17, 2024 18:51 58s
Adding rule to make GenomicsDBImport config tests #222: Commit 45fce43 pushed by skchronicles
June 14, 2024 19:32 54s main
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June 14, 2024 19:32 54s
Adding gather steps for merging calls across chromosomes tests #221: Commit b8ce9f7 pushed by skchronicles
June 13, 2024 20:22 57s main
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June 13, 2024 20:22 57s
Adding gatk haplotypecaller to call germline variants tests #220: Commit 85cc8c1 pushed by skchronicles
June 11, 2024 18:27 1m 0s main
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June 11, 2024 18:27 1m 0s
Adding gatk-germline cli option tests #219: Commit 71627d5 pushed by skchronicles
June 10, 2024 17:09 1m 1s main
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June 10, 2024 17:09 1m 1s
UGE/SGE total memory is the product of the cpu and mem allocations tests #218: Commit a1b00ea pushed by skchronicles
May 7, 2024 19:40 1m 0s main
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May 7, 2024 19:40 1m 0s
Bumping up gres for bwa mem 2 rule tests #216: Commit cffd003 pushed by skchronicles
April 5, 2024 16:13 1m 6s main
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April 5, 2024 16:13 1m 6s
Chore: Increasing local disk and bumping down DV make_examples thread… tests #215: Commit e03ded4 pushed by skchronicles
February 16, 2024 22:07 56s main
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February 16, 2024 22:07 56s
Feat: Adding second step of DV to call variants tests #213: Commit a74a153 pushed by skchronicles
February 15, 2024 21:44 1m 0s main
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February 15, 2024 21:44 1m 0s
Bumping down DV postprocess variants allocations tests #212: Commit 34445af pushed by skchronicles
February 14, 2024 21:21 56s main
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February 14, 2024 21:21 56s