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Update behavior --peakcall parser and validation #29

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skchronicles opened this issue Jan 30, 2024 · 0 comments
Open

Update behavior --peakcall parser and validation #29

skchronicles opened this issue Jan 30, 2024 · 0 comments
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Make the following changes to how the --peakcall PEAKCALL file is parsed and validated:

  1. Update the names of the following columns:
    a. "ChIP" becomes "Sample"
    b. "Input" becomes "InputControl"
  2. InputControl becomes an optional column.
    a. Only "Sample" and "Group" should be required
  3. Documentation on the CLI and wiki should be updated to include the changes and made to encompass both ATAC and ChIP
@skchronicles skchronicles self-assigned this Jan 30, 2024
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