From 5beb25825965ba96f67f5ec18d2e99d5fd77cfe8 Mon Sep 17 00:00:00 2001
From: skchronicles <kuhnsa3@gmail.com>
Date: Wed, 13 Sep 2023 11:08:27 -0400
Subject: [PATCH] Updating docs and bumping up version for first release

---
 VERSION           | 2 +-
 docs/usage/run.md | 3 ++-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/VERSION b/VERSION
index a67658d..3eefcb9 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-0.1.0-beta
+1.0.0
diff --git a/docs/usage/run.md b/docs/usage/run.md
index 99fea19..840c94d 100644
--- a/docs/usage/run.md
+++ b/docs/usage/run.md
@@ -14,6 +14,7 @@ $ chrom-seek run [--help] \
       [--tmp-dir TMP_DIR] [--silent] [--sif-cache SIF_CACHE] \ 
       [--singularity-cache SINGULARITY_CACHE] \
       [--dry-run] [--threads THREADS] \
+      [--contrasts CONTRASTS] \
       --assay {cfChIP,ChIP,ATAC} \
       --genome GENOME \
       --input INPUT [INPUT ...] \
@@ -232,4 +233,4 @@ module load singularity snakemake
                   --output /data/$USER/output \
                   --peakcall .tests/peakcall.tsv \
                   --mode slurm
-```
\ No newline at end of file
+```