Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

MendelBase not working in Julia version 1.0.0 #3

Open
DanielEWeeks opened this issue Aug 14, 2018 · 0 comments
Open

MendelBase not working in Julia version 1.0.0 #3

DanielEWeeks opened this issue Aug 14, 2018 · 0 comments

Comments

@DanielEWeeks
Copy link

We had been using OpenMendel with Julia version 0.6.0, but now we want to use the 'Missings' module which requires Julia version 1.0.0 or higher, but when I try to install MendelBase using Julia version 1.0.0, it fails because the GLM module does not work, choking on this line:

using Base.LinAlg.LAPACK: potrf!, potrs!

Any ideas how to fix this?

Thanks,
-- Dan --

           _

_ _ ()_ | Documentation: https://docs.julialang.org
() | () () |
_ _ | | __ _ | Type "?" for help, "]?" for Pkg help.
| | | | | | |/ ` | |
| | |
| | | | (
| | | Version 1.0.0 (2018-08-08)
/ |_'|||_'_| | Official https://julialang.org/ release
|__/ |

julia> using MendelBase
[ Info: Precompiling MendelBase [ad4ee748-342c-5e0b-a1f2-4993d4221618]
ERROR: LoadError: UndefVarError: LinAlg not defined
Stacktrace:
[1] include at ./boot.jl:317 [inlined]
[2] include_relative(::Module, ::String) at ./loading.jl:1038
[3] include(::Module, ::String) at ./sysimg.jl:29
[4] top-level scope at none:2
[5] eval at ./boot.jl:319 [inlined]
[6] eval(::Expr) at ./client.jl:389
[7] top-level scope at ./none:3
in expression starting at /home/weeks/.julia/dev/GLM/src/GLM.jl:5
ERROR: LoadError: Failed to precompile GLM [38e38edf-8417-5370-95a0-9cbb8c7f171a] to /home/weeks/.julia/compiled/v1.0/GLM/6OREG.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834
[8] include at ./boot.jl:317 [inlined]
[9] include_relative(::Module, ::String) at ./loading.jl:1038
[10] include(::Module, ::String) at ./sysimg.jl:29
[11] top-level scope at none:2
[12] eval at ./boot.jl:319 [inlined]
[13] eval(::Expr) at ./client.jl:389
[14] top-level scope at ./none:3
in expression starting at /home/weeks/.julia/dev/MendelBase/src/MendelBase.jl:11
ERROR: Failed to precompile MendelBase [ad4ee748-342c-5e0b-a1f2-4993d4221618] to /home/weeks/.julia/compiled/v1.0/MendelBase/DpgEd.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834

julia>

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant