fix docs and test

OpenMendel · Sep 8, 2023 · 26c14f1 · 26c14f1
1 parent 28ef8d7
commit 26c14f1
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Showing 3 changed files with 9 additions and 4 deletions.
diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
@@ -45,6 +45,11 @@ jobs:
       - run: |
           git config --global user.name Tester
           git config --global user.email [email protected]
+      - run: |
+          julia --project=docs -e '
+            using Pkg
+            Pkg.add(url="https://github.com/kose-y/SKFR.jl", rev="master")
+            Pkg.add(url="https://github.com/OpenMendel/OpenADMIXTURE.jl", rev="main")'
       - uses: julia-actions/julia-runtest@latest
       - uses: julia-actions/julia-processcoverage@v1
       - uses: codecov/codecov-action@v1

diff --git a/docs/make.jl b/docs/make.jl
@@ -17,6 +17,6 @@ makedocs(;
 )
 
 deploydocs(;
-    repo="github.com/HaploADMIXTURE/HaploADMIXTURE.jl",
+    repo="github.com/OpenMendel/HaploADMIXTURE.jl",
     devbranch = "main"
 )
diff --git a/test/runtests.jl b/test/runtests.jl
@@ -8,7 +8,7 @@ using Test
     @test d.ll_new ≈ -1.3344074094647754e7
     d, _, _ = HaploADMIXTURE.run_admixture(EUR, 379, 1000, 4; sparsity=1000, rng=rng, prefix="test", admix_rtol=1e-5)
     @test d.ll_new ≈ -440149.1599139798
-    rm("test_4_2000aims.bed", force=true)
-    rm("test_4_2000aims.bim", force=true)
-    rm("test_4_2000aims.fam", force=true)
+    Sys.iswindows() || rm("test_4_2000aims.bed", force=true)
+    Sys.iswindows() || rm("test_4_2000aims.bim", force=true)
+    Sys.iswindows() || rm("test_4_2000aims.fam", force=true)
 end