You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Is there a way to estimate abundance of a genome with proportion of reads matched by fastv?
For an example genome mapped by fastv, if we are seeing 381 k-mer keys matched with 824 kmer hits, coverage 74.8%, showing a median depth of 1 and mean depth of 2.16, how can we deduce the abundance of such an example genome detected in a sample.
Can you please share your thoughts?
Thanks,
Intikhab
The text was updated successfully, but these errors were encountered:
Dear FastV developers,
Is there a way to estimate abundance of a genome with proportion of reads matched by fastv?
For an example genome mapped by fastv, if we are seeing 381 k-mer keys matched with 824 kmer hits, coverage 74.8%, showing a median depth of 1 and mean depth of 2.16, how can we deduce the abundance of such an example genome detected in a sample.
Can you please share your thoughts?
Thanks,
Intikhab
The text was updated successfully, but these errors were encountered: