Update GHA to debug test failures

OHDSI · Aug 17, 2023 · 1a0d073 · 1a0d073
1 parent 28c36f9
commit 1a0d073
Showing 1 changed file with 17 additions and 5 deletions.
diff --git a/.github/workflows/R_CMD_check_Hades.yaml b/.github/workflows/R_CMD_check_Hades.yaml
@@ -20,9 +20,12 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: windows-latest, r: 'release'}
-          - {os: macOS-latest, r: 'release'}
-          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          #- {os: windows-latest, r: '4.2.3', rtools: '42', rspm: "https://cloud.r-project.org"}
+          #- {os: macOS-latest, r: '4.2.3', rtools: '42', rspm: "https://cloud.r-project.org"}
+          - {os: ubuntu-20.04, r: '4.2.3', rtools: '42', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          #- {os: windows-latest, r: 'release', rtools: '', rspm: "https://cloud.r-project.org"}
+          #- {os: macOS-latest, r: 'release', rtools: '', rspm: "https://cloud.r-project.org"}
+          #- {os: ubuntu-20.04, r: 'release', rtools: '', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
 
     env:
       GITHUB_PAT: ${{ secrets.GH_TOKEN }}
@@ -53,11 +56,12 @@ jobs:
       CDM5_SPARK_CONNECTION_STRING: ${{ secrets.CDM5_SPARK_CONNECTION_STRING }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
+          rtools-version: ${{ matrix.config.rtools }}
 
       - uses: r-lib/actions/setup-tinytex@v2
 
@@ -66,7 +70,11 @@ jobs:
       - name: Install system requirements
         if: runner.os == 'Linux'
         run: |
-          sudo apt-get install -y libssh-dev
+          sudo apt-get install -y make
+          sudo apt-get install -y default-jdk
+          sudo apt-get install -y libcurl4-openssl-dev
+          sudo apt-get install -y libssl-dev
+          sudo apt-get install -y libglpk-dev
           while read -r cmd
           do
             eval sudo $cmd
@@ -77,6 +85,10 @@ jobs:
           extra-packages: any::rcmdcheck
           needs: check
 
+      - uses: r-lib/actions/setup-renv@v2
+        with:
+          cache-version: 1
+
       - uses: r-lib/actions/check-r-package@v2
         with:
           args: 'c("--no-manual", "--as-cran")'