diff --git a/meta.yaml b/meta.yaml index f92dfabba..0b6da68de 100644 --- a/meta.yaml +++ b/meta.yaml @@ -73,7 +73,7 @@ requirements: - zlib==1.2.11 - rec_to_binaries==0.4.2.dev0 - xmldiff==2.4 - - ndx-fl-novela==0.0.003 + - ndx-franklab-novela==0.0.004 about: diff --git a/rec_to_nwb/environment.yml b/rec_to_nwb/environment.yml index dd05a95d8..e3c980606 100644 --- a/rec_to_nwb/environment.yml +++ b/rec_to_nwb/environment.yml @@ -46,7 +46,7 @@ dependencies: - pyyaml - pytest - testfixtures - - ndx-fl-novela==0.0.003 + - ndx-franklab-novela==0.0.004 - pip: - xmldiff - rec-to-binaries==0.4.2.dev0 diff --git a/rec_to_nwb/processing/nwb/components/associated_files/associated_files_creator.py b/rec_to_nwb/processing/nwb/components/associated_files/associated_files_creator.py index 7b082267d..7582009b1 100644 --- a/rec_to_nwb/processing/nwb/components/associated_files/associated_files_creator.py +++ b/rec_to_nwb/processing/nwb/components/associated_files/associated_files_creator.py @@ -1,4 +1,4 @@ -from ndx_fl_novela.associated_files import AssociatedFiles +from ndx_franklab_novela.associated_files import AssociatedFiles class AssociatedFilesCreator: diff --git a/rec_to_nwb/processing/nwb/components/device/device_factory.py b/rec_to_nwb/processing/nwb/components/device/device_factory.py index b6cf7f909..9a4cbce08 100644 --- a/rec_to_nwb/processing/nwb/components/device/device_factory.py +++ b/rec_to_nwb/processing/nwb/components/device/device_factory.py @@ -1,5 +1,5 @@ -from ndx_fl_novela.header_device import HeaderDevice -from ndx_fl_novela.probe import Probe +from ndx_franklab_novela.header_device import HeaderDevice +from ndx_franklab_novela.probe import Probe from pynwb.device import Device from rec_to_nwb.processing.tools.validate_parameters import validate_parameters_not_none diff --git a/rec_to_nwb/processing/nwb/components/device/shanks/shank_creator.py b/rec_to_nwb/processing/nwb/components/device/shanks/shank_creator.py index 13f606624..f42ba51f9 100644 --- a/rec_to_nwb/processing/nwb/components/device/shanks/shank_creator.py +++ b/rec_to_nwb/processing/nwb/components/device/shanks/shank_creator.py @@ -1,4 +1,4 @@ -from ndx_fl_novela.probe import Shank +from ndx_franklab_novela.probe import Shank from rec_to_nwb.processing.tools.validate_parameters import validate_parameters_not_none diff --git a/rec_to_nwb/processing/nwb/components/device/shanks_electrodes/shanks_electrode_creator.py b/rec_to_nwb/processing/nwb/components/device/shanks_electrodes/shanks_electrode_creator.py index 460516190..c80513a6a 100644 --- a/rec_to_nwb/processing/nwb/components/device/shanks_electrodes/shanks_electrode_creator.py +++ b/rec_to_nwb/processing/nwb/components/device/shanks_electrodes/shanks_electrode_creator.py @@ -1,4 +1,4 @@ -from ndx_fl_novela.probe import ShanksElectrode +from ndx_franklab_novela.probe import ShanksElectrode from rec_to_nwb.processing.tools.validate_parameters import validate_parameters_not_none diff --git a/rec_to_nwb/processing/nwb/components/electrode_group/electrode_group_factory.py b/rec_to_nwb/processing/nwb/components/electrode_group/electrode_group_factory.py index 62ee20686..c563b0faf 100644 --- a/rec_to_nwb/processing/nwb/components/electrode_group/electrode_group_factory.py +++ b/rec_to_nwb/processing/nwb/components/electrode_group/electrode_group_factory.py @@ -1,4 +1,4 @@ -from ndx_fl_novela.nwb_electrode_group import NwbElectrodeGroup +from ndx_franklab_novela.nwb_electrode_group import NwbElectrodeGroup from pynwb.ecephys import ElectrodeGroup from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group import FlElectrodeGroup diff --git a/rec_to_nwb/processing/nwb/components/electrode_group/fl_electrode_group_manager.py b/rec_to_nwb/processing/nwb/components/electrode_group/fl_electrode_group_manager.py index 28650c57f..17e8c676c 100644 --- a/rec_to_nwb/processing/nwb/components/electrode_group/fl_electrode_group_manager.py +++ b/rec_to_nwb/processing/nwb/components/electrode_group/fl_electrode_group_manager.py @@ -1,4 +1,4 @@ -from ndx_fl_novela.probe import Probe +from ndx_franklab_novela.probe import Probe from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group_builder import FlElectrodeGroupBuilder from rec_to_nwb.processing.tools.beartype.beartype import beartype diff --git a/rec_to_nwb/processing/nwb/components/electrode_group/fl_nwb_electrode_group_manager.py b/rec_to_nwb/processing/nwb/components/electrode_group/fl_nwb_electrode_group_manager.py index 9c3df9d5b..6062a9cf7 100644 --- a/rec_to_nwb/processing/nwb/components/electrode_group/fl_nwb_electrode_group_manager.py +++ b/rec_to_nwb/processing/nwb/components/electrode_group/fl_nwb_electrode_group_manager.py @@ -1,4 +1,4 @@ -from ndx_fl_novela.probe import Probe +from ndx_franklab_novela.probe import Probe from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group import FlElectrodeGroup from rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group_builder import FlNwbElectrodeGroupBuilder diff --git a/rec_to_nwb/scripts/nwb_eseries_timestamps_visualization.py b/rec_to_nwb/scripts/nwb_eseries_timestamps_visualization.py index c4f93a67a..b360a2579 100644 --- a/rec_to_nwb/scripts/nwb_eseries_timestamps_visualization.py +++ b/rec_to_nwb/scripts/nwb_eseries_timestamps_visualization.py @@ -2,9 +2,9 @@ import matplotlib.pyplot as plt from pynwb import NWBHDF5IO -from ndx_fl_novela.apparatus import Apparatus, Edge, Node -from ndx_fl_novela.header_device import HeaderDevice -from ndx_fl_novela.ntrode import NTrode +from ndx_franklab_novela.apparatus import Apparatus, Edge, Node +from ndx_franklab_novela.header_device import HeaderDevice +from ndx_franklab_novela.ntrode import NTrode nwb_file = NWBHDF5IO('rec_to_nwb/rec_to_nwb/test/beans20190718.nwb', 'r') nwbfile_read = nwb_file.read() diff --git a/rec_to_nwb/test/processing/associated_files/test_associatedFilesCreator.py b/rec_to_nwb/test/processing/associated_files/test_associatedFilesCreator.py index 099ab5cdf..fb39148d3 100644 --- a/rec_to_nwb/test/processing/associated_files/test_associatedFilesCreator.py +++ b/rec_to_nwb/test/processing/associated_files/test_associatedFilesCreator.py @@ -1,7 +1,7 @@ import os import unittest -from ndx_fl_novela.associated_files import AssociatedFiles +from ndx_franklab_novela.associated_files import AssociatedFiles from rec_to_nwb.processing.nwb.components.associated_files.associated_files_creator import AssociatedFilesCreator from rec_to_nwb.processing.nwb.components.associated_files.fl_associated_file import FlAssociatedFile diff --git a/rec_to_nwb/test/processing/device/shank/test_flShankManager.py b/rec_to_nwb/test/processing/device/shank/test_flShankManager.py index 45a3ca1d2..84efddfac 100644 --- a/rec_to_nwb/test/processing/device/shank/test_flShankManager.py +++ b/rec_to_nwb/test/processing/device/shank/test_flShankManager.py @@ -1,7 +1,7 @@ from unittest import TestCase from unittest.mock import Mock -from ndx_fl_novela.probe import ShanksElectrode +from ndx_franklab_novela.probe import ShanksElectrode from testfixtures import should_raise from rec_to_nwb.processing.exceptions.none_param_exception import NoneParamException diff --git a/rec_to_nwb/test/processing/device/test_deviceFactory.py b/rec_to_nwb/test/processing/device/test_deviceFactory.py index 152e9740a..d93c25b76 100644 --- a/rec_to_nwb/test/processing/device/test_deviceFactory.py +++ b/rec_to_nwb/test/processing/device/test_deviceFactory.py @@ -1,8 +1,8 @@ from unittest import TestCase from unittest.mock import Mock -from ndx_fl_novela.header_device import HeaderDevice -from ndx_fl_novela.probe import Probe, Shank +from ndx_franklab_novela.header_device import HeaderDevice +from ndx_franklab_novela.probe import Probe, Shank from pynwb.device import Device from testfixtures import should_raise diff --git a/rec_to_nwb/test/processing/device/test_deviceInjector.py b/rec_to_nwb/test/processing/device/test_deviceInjector.py index de77c9c74..95cd70b31 100644 --- a/rec_to_nwb/test/processing/device/test_deviceInjector.py +++ b/rec_to_nwb/test/processing/device/test_deviceInjector.py @@ -3,8 +3,8 @@ from unittest.mock import Mock from dateutil.tz import tzlocal -from ndx_fl_novela.header_device import HeaderDevice -from ndx_fl_novela.probe import Probe +from ndx_franklab_novela.header_device import HeaderDevice +from ndx_franklab_novela.probe import Probe from pynwb import NWBFile from pynwb.device import Device from testfixtures import should_raise diff --git a/rec_to_nwb/test/processing/device/test_flProbeManager.py b/rec_to_nwb/test/processing/device/test_flProbeManager.py index b07630438..a4641a91a 100644 --- a/rec_to_nwb/test/processing/device/test_flProbeManager.py +++ b/rec_to_nwb/test/processing/device/test_flProbeManager.py @@ -2,7 +2,7 @@ from unittest import TestCase from unittest.mock import Mock -from ndx_fl_novela.probe import Shank +from ndx_franklab_novela.probe import Shank from testfixtures import should_raise from rec_to_nwb.processing.nwb.components.device.fl_probe import FlProbe diff --git a/rec_to_nwb/test/processing/electrode_group/test_electrodeGroupFactory.py b/rec_to_nwb/test/processing/electrode_group/test_electrodeGroupFactory.py index 163e7920a..55c048ec2 100644 --- a/rec_to_nwb/test/processing/electrode_group/test_electrodeGroupFactory.py +++ b/rec_to_nwb/test/processing/electrode_group/test_electrodeGroupFactory.py @@ -6,7 +6,7 @@ from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group import FlElectrodeGroup from rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group import FlNwbElectrodeGroup -from ndx_fl_novela.probe import Probe +from ndx_franklab_novela.probe import Probe from pynwb.device import Device from testfixtures import should_raise diff --git a/rec_to_nwb/test/processing/electrode_group/test_flElectrodeGroupManager.py b/rec_to_nwb/test/processing/electrode_group/test_flElectrodeGroupManager.py index 5d471d9ec..3f53c04b1 100644 --- a/rec_to_nwb/test/processing/electrode_group/test_flElectrodeGroupManager.py +++ b/rec_to_nwb/test/processing/electrode_group/test_flElectrodeGroupManager.py @@ -5,7 +5,7 @@ from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group_manager import FlElectrodeGroupManager from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group import FlElectrodeGroup -from ndx_fl_novela.probe import Probe +from ndx_franklab_novela.probe import Probe from testfixtures import should_raise path = os.path.dirname(os.path.abspath(__file__)) diff --git a/rec_to_nwb/test/processing/electrode_group/test_flNwbElectrodeGroupManager.py b/rec_to_nwb/test/processing/electrode_group/test_flNwbElectrodeGroupManager.py index 95d5b33d3..ca25819d6 100644 --- a/rec_to_nwb/test/processing/electrode_group/test_flNwbElectrodeGroupManager.py +++ b/rec_to_nwb/test/processing/electrode_group/test_flNwbElectrodeGroupManager.py @@ -5,7 +5,7 @@ from rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group import FlNwbElectrodeGroup from rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group_manager import FlNwbElectrodeGroupManager -from ndx_fl_novela.probe import Probe +from ndx_franklab_novela.probe import Probe from testfixtures import should_raise path = os.path.dirname(os.path.abspath(__file__))