DESCRIPTION

Package: peakCombiner
Title: The R package to curate and merge enriched genomic regions into consensus peak sets
Version: 0.99.4
Description: peakCombiner, a fully R based, user-friendly, transparent, and customizable tool that allows even novice R users to create a high-quality consensus peak list. The modularity of its functions allows an easy way to optimize input and output data. A broad range of accepted input data formats can be used to create a consensus peak set that can be exported to a file or used as the starting point for most downstream peak analyses. 
Authors@R: c(person("Markus", "Muckenhuber",
                email = "markusmuckenhuber@gmx.at", 
                role = c("aut", "cre"), 
                comment = c(ORCID = "0000-0003-1897-2329")),
             person("Kathleen", "Sprouffske",
                email = "",
                role = c("aut"),
                comment = c(ORCID = "0000-0001-7081-2598")),
             person("Michael", "Stadler",
                email = "",
                role = c("aut"),
                comment = c(ORCID = "0000-0002-2269-4934")))
Depends: R (>= 4.2)
License: MIT + file LICENSE
LazyData: FALSE
biocViews:
    WorkflowStep,
    Preprocessing,
    ChipOnChip
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Suggests: 
    testthat (>= 3.0.0),
    rmarkdown,
    styler,
    cli,
    lintr,
    rtracklayer,
    knitr,
    devtools,
    qpdf,
    BiocStyle,
    ggplot2
DEPENDS:
        dplyr (>= 1.1.2),
        GenomicRanges
Imports: 
    stringr,
    tidyr,
    purrr (>= 1.0.1),
    readr (>= 2.1.2),
    tibble (>= 3.2.1),
    stats,
    IRanges,
    rlang,
    here
URL:
BugReports:
Config/testthat/edition: 3
VignetteBuilder: knitr