From a7ed78b786456b76e8cef77fca8c290ede6923f7 Mon Sep 17 00:00:00 2001
From: martin-springer <martinspringer.ms@gmail.com>
Date: Wed, 21 Aug 2024 09:02:39 -0400
Subject: [PATCH 1/2] replace deploy with trusted publisher

---
 .github/workflows/deploy.yaml          | 33 -----------------
 .github/workflows/publish-to-pypi.yaml | 50 ++++++++++++++++++++++++++
 2 files changed, 50 insertions(+), 33 deletions(-)
 delete mode 100644 .github/workflows/deploy.yaml
 create mode 100644 .github/workflows/publish-to-pypi.yaml

diff --git a/.github/workflows/deploy.yaml b/.github/workflows/deploy.yaml
deleted file mode 100644
index 05750cd46..000000000
--- a/.github/workflows/deploy.yaml
+++ /dev/null
@@ -1,33 +0,0 @@
-name: Deploy Python Package
-
-on:
-  release:
-    types: [published]
-
-jobs:
-  deploy:
-    name: Deploy to PyPI
-    runs-on: ubuntu-latest
-
-    steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python
-      uses: actions/setup-python@v2
-      with:
-        python-version: '3.8'
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        pip install setuptools wheel twine
-    - name: Build and publish
-      env:
-        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
-        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
-      run: |
-        python setup.py sdist bdist_wheel
-        twine upload dist/*
-    - uses: actions/upload-artifact@v2
-      with:
-        name: dist
-        path: |
-          dist/*
diff --git a/.github/workflows/publish-to-pypi.yaml b/.github/workflows/publish-to-pypi.yaml
new file mode 100644
index 000000000..57d938ed4
--- /dev/null
+++ b/.github/workflows/publish-to-pypi.yaml
@@ -0,0 +1,50 @@
+name: Publish Python distribution to PyPI and TestPyPI
+
+on: push
+
+jobs:
+  build:
+    name: Build distribution
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.x"
+    - name: Install pypa/build
+      run: >-
+        python3 -m
+        pip install
+        build
+        --user
+    - name: Build a binary wheel and a source tarball
+      run: python3 -m build
+    - name: Store the distribution packages
+      uses: actions/upload-artifact@v4
+      with:
+        name: python-package-distributions
+        path: dist/
+
+  publish-to-pypi:
+    name: >-
+      Publish Python distribution to PyPI
+    if: startsWith(github.ref, 'refs/tags/')  # only publish to PyPI on tag pushes
+    needs:
+    - build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/rdtools
+    permissions:
+      id-token: write  # IMPORTANT: mandatory for trusted publishing
+
+    steps:
+    - name: Download all the dists
+      uses: actions/download-artifact@v4
+      with:
+        name: python-package-distributions
+        path: dist/
+    - name: Publish distribution to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1
\ No newline at end of file

From bcf8eede09ca3ed0f9d1e4874d2be986e6df8cc9 Mon Sep 17 00:00:00 2001
From: martin-springer <martinspringer.ms@gmail.com>
Date: Wed, 21 Aug 2024 09:12:40 -0400
Subject: [PATCH 2/2] update changelog

---
 docs/sphinx/source/changelog/pending.rst | 1 +
 1 file changed, 1 insertion(+)

diff --git a/docs/sphinx/source/changelog/pending.rst b/docs/sphinx/source/changelog/pending.rst
index c1ef09d29..f6f4e25b0 100644
--- a/docs/sphinx/source/changelog/pending.rst
+++ b/docs/sphinx/source/changelog/pending.rst
@@ -23,6 +23,7 @@ Enhancements
 Bug fixes
 ---------
 * Fix typos in citation section of the readme file (:issue:`414`, :pull:`421`)
+* Fix deploy workflow to pypi (:issue:`416`, :pull:`427`)
 
 Requirements
 ------------